Wall clock time and date at job start Tue Mar 31 2020 14:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86797 * 119.99919 * 2 1 4 4 H 1.48504 * 109.46931 * 270.00038 * 3 2 1 5 5 H 1.48500 * 109.47173 * 30.00026 * 3 2 1 6 6 H 1.48496 * 109.46942 * 149.99896 * 3 2 1 7 7 C 1.40026 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99524 * 179.97438 * 7 2 1 9 9 C 1.41311 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78036 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14550 * 180.02562 * 10 9 7 12 12 C 1.38633 * 118.68072 * 359.73974 * 11 10 9 13 13 C 1.39750 * 119.49322 * 0.50846 * 12 11 10 14 14 N 1.38831 * 119.58841 * 179.76259 * 13 12 11 15 15 C 1.46498 * 119.99574 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47059 * 179.72445 * 15 14 13 17 17 C 1.50697 * 109.47491 * 179.97438 * 16 15 14 18 18 C 1.34208 * 126.50241 * 265.02801 * 17 16 15 19 19 N 1.36899 * 109.92926 * 179.97438 * 18 17 16 20 20 H 0.96996 * 125.06541 * 179.97438 * 19 18 17 21 21 C 1.37685 * 109.86562 * 359.97438 * 19 18 17 22 22 C 1.39116 * 133.47820 * 180.02562 * 21 19 18 23 23 C 1.37950 * 119.76193 * 179.25341 * 22 21 19 24 24 F 1.35098 * 119.69709 * 180.20413 * 23 22 21 25 25 C 1.39032 * 120.60765 * 0.61909 * 23 22 21 26 26 C 1.36606 * 120.50279 * 359.60679 * 25 23 22 27 27 C 1.39625 * 119.79933 * 359.97438 * 26 25 23 28 28 N 1.31982 * 120.82816 * 359.48094 * 13 12 11 29 29 H 0.97005 * 119.99839 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.43032 * 359.97438 * 10 9 7 31 31 H 1.08001 * 120.65431 * 180.02562 * 11 10 9 32 32 H 1.08000 * 120.25157 * 180.26693 * 12 11 10 33 33 H 0.97001 * 119.99981 * 179.71827 * 14 13 12 34 34 H 1.09004 * 109.46963 * 299.72241 * 15 14 13 35 35 H 1.08994 * 109.47567 * 59.72393 * 15 14 13 36 36 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 37 37 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 38 38 H 1.08011 * 125.03278 * 0.02562 * 18 17 16 39 39 H 1.08002 * 120.12108 * 359.97438 * 22 21 19 40 40 H 1.07997 * 119.74897 * 179.58679 * 25 23 22 41 41 H 1.07997 * 120.09595 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3009 -2.4364 -0.0005 10 6 2.0084 -3.6513 -0.0016 11 6 1.3034 -4.8417 -0.0022 12 6 -0.0821 -4.7944 0.0039 13 6 -0.7282 -3.5552 -0.0004 14 7 -2.1156 -3.5055 0.0007 15 6 -2.8930 -4.7472 0.0069 16 6 -4.3862 -4.4140 0.0138 17 6 -5.1859 -5.6913 0.0195 18 6 -5.6942 -6.3198 -1.0518 19 7 -6.3594 -7.4497 -0.6580 20 1 -6.8104 -8.0673 -1.2546 21 6 -6.2928 -7.5785 0.7112 22 6 -6.7854 -8.5200 1.6092 23 6 -6.5328 -8.3776 2.9579 24 9 -7.0083 -9.2949 3.8283 25 6 -5.8009 -7.2942 3.4305 26 6 -5.3127 -6.3566 2.5651 27 6 -5.5496 -6.4867 1.1953 28 7 -0.0360 -2.4315 0.0001 29 1 -0.4850 0.8401 -0.0004 30 1 3.0885 -3.6554 -0.0029 31 1 1.8221 -5.7890 -0.0026 32 1 -0.6578 -5.7082 0.0080 33 1 -2.5703 -2.6486 0.0019 34 1 -2.6547 -5.3295 -0.8832 35 1 -2.6459 -5.3262 0.8967 36 1 -4.6245 -3.8318 0.9040 37 1 -4.6335 -3.8350 -0.8760 38 1 -5.5926 -5.9844 -2.0735 39 1 -7.3535 -9.3656 1.2506 40 1 -5.6170 -7.1928 4.4899 41 1 -4.7446 -5.5179 2.9394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255094998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:02 Heat of formation + Delta-G solvation = 46.510711 kcal Electronic energy + Delta-G solvation = -25284.038144 eV Core-core repulsion = 21464.364542 eV Total energy + Delta-G solvation = -3819.673602 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.04589 -41.50006 -38.22520 -36.92056 -35.69423 -33.58010 -32.71751 -30.74840 -30.21267 -29.47887 -28.72373 -27.02291 -25.28740 -23.37871 -23.01998 -22.08819 -21.39006 -20.24835 -19.54258 -18.33737 -17.34612 -17.30428 -16.44753 -16.09014 -15.79613 -15.45041 -14.97276 -14.71460 -14.60597 -14.48309 -14.17214 -14.08648 -13.74970 -13.38024 -13.07195 -12.91979 -12.66184 -12.24672 -12.05820 -11.93759 -11.59544 -11.48145 -11.30122 -11.17914 -10.95221 -10.88544 -10.58323 -10.38170 -9.87976 -9.76249 -9.43599 -8.82842 -8.44220 -7.86885 -7.85796 -7.46290 -6.45492 -6.28749 -4.43125 0.76238 1.25113 2.40542 2.78447 2.91254 3.13313 3.16750 3.28581 3.34152 3.53157 4.01344 4.15173 4.27168 4.44212 4.55653 4.81751 4.88458 4.94187 5.04371 5.25634 5.26892 5.41792 5.56438 5.66533 5.77217 5.83642 5.95215 6.08151 6.18362 6.20482 6.26604 6.32496 6.47479 6.55792 6.64408 6.86436 6.91386 6.94236 7.00170 7.24033 7.29513 7.64999 7.86563 7.97209 8.21613 8.42016 8.74495 8.84972 9.17355 10.29229 10.44854 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.020277 B = 0.002270 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.548218 B =12333.373537 C =12462.826312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.435 4.435 8 H 0.082 0.918 9 C 0.292 3.708 10 C -0.317 4.317 11 C -0.033 4.033 12 C -0.366 4.366 13 C 0.412 3.588 14 N -0.740 5.740 15 C 0.149 3.851 16 C -0.057 4.057 17 C -0.150 4.150 18 C 0.053 3.947 19 N -0.593 5.593 20 H 0.417 0.583 21 C 0.120 3.880 22 C -0.171 4.171 23 C 0.118 3.882 24 F -0.141 7.141 25 C -0.181 4.181 26 C -0.033 4.033 27 C -0.110 4.110 28 N -0.532 5.532 29 H 0.269 0.731 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.395 0.605 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.174 0.826 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.793 -11.730 0.181 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.153 4.153 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.100 0.900 9 C 0.165 3.835 10 C -0.340 4.340 11 C -0.057 4.057 12 C -0.392 4.392 13 C 0.172 3.828 14 N -0.377 5.377 15 C 0.023 3.977 16 C -0.095 4.095 17 C -0.157 4.157 18 C -0.072 4.072 19 N -0.196 5.196 20 H 0.254 0.746 21 C 0.012 3.988 22 C -0.193 4.193 23 C 0.097 3.903 24 F -0.120 7.120 25 C -0.200 4.200 26 C -0.052 4.052 27 C -0.115 4.115 28 N -0.254 5.254 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.229 0.771 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.191 0.809 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -16.489 -11.094 0.099 19.874 hybrid contribution 0.329 -0.436 -0.189 0.578 sum -16.160 -11.531 -0.090 19.852 Atomic orbital electron populations 1.70159 1.07104 1.27228 1.29337 1.26043 0.94859 1.00852 0.93592 0.86390 0.80523 0.81127 0.79086 1.19553 1.20276 1.18634 1.19566 0.94119 0.89397 1.43659 0.89959 1.18198 0.86948 0.91821 0.86514 1.21533 0.98378 0.93498 1.20621 1.20596 0.93484 0.96333 0.95291 1.20612 0.94572 0.95553 1.28455 1.18511 0.84333 0.90209 0.89753 1.44152 1.02750 1.06823 1.84022 1.20996 0.88600 0.87462 1.00639 1.20106 0.93115 0.92996 1.03303 1.20122 1.05652 0.99227 0.90691 1.21712 0.98144 0.87865 0.99466 1.41695 1.49007 1.23765 1.05083 0.74622 1.17765 1.00383 0.96933 0.83756 1.19721 1.07482 1.01279 0.90816 1.17166 0.98200 0.88668 0.86244 1.91486 1.86555 1.65091 1.68820 1.20623 1.02932 0.95360 1.01126 1.20215 0.96365 0.97925 0.90667 1.19151 1.02562 0.96241 0.93538 1.68214 1.07657 1.24368 1.25140 0.92008 0.88776 0.89035 0.89239 0.77065 0.93255 0.93120 0.90485 0.90507 0.80874 0.85171 0.84686 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.06 11.46 55.55 0.64 -18.42 16 2 C 0.07 1.84 5.50 -17.34 -0.10 1.74 16 3 Si 0.90 18.80 29.56 -169.99 -5.02 13.77 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.44 -11.89 9.14 -37.74 -0.34 -12.24 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.29 8.24 6.55 -85.00 -0.56 7.68 16 10 C -0.32 -8.16 9.83 -38.65 -0.38 -8.54 16 11 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 12 C -0.37 -8.59 9.34 -38.87 -0.36 -8.95 16 13 C 0.41 10.11 7.65 -155.31 -1.19 8.93 16 14 N -0.74 -14.61 5.72 -60.40 -0.35 -14.95 16 15 C 0.15 2.28 4.87 -4.04 -0.02 2.26 16 16 C -0.06 -0.67 5.86 -27.89 -0.16 -0.83 16 17 C -0.15 -1.66 5.57 -102.70 -0.57 -2.23 16 18 C 0.05 0.47 11.73 -16.71 -0.20 0.27 16 19 N -0.59 -4.79 6.07 -10.64 -0.06 -4.85 16 20 H 0.42 2.01 8.96 -40.82 -0.37 1.65 16 21 C 0.12 1.25 7.27 -84.00 -0.61 0.64 16 22 C -0.17 -1.71 10.05 -39.36 -0.40 -2.10 16 23 C 0.12 1.28 7.28 -39.39 -0.29 0.99 16 24 F -0.14 -1.58 17.25 2.25 0.04 -1.54 16 25 C -0.18 -1.91 9.95 -39.88 -0.40 -2.30 16 26 C -0.03 -0.37 10.05 -39.65 -0.40 -0.77 16 27 C -0.11 -1.29 6.35 -105.12 -0.67 -1.96 16 28 N -0.53 -14.80 7.89 -10.33 -0.08 -14.88 16 29 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 30 H 0.09 2.25 8.06 -52.48 -0.42 1.83 16 31 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.09 1.89 6.68 -52.49 -0.35 1.54 16 33 H 0.39 7.65 8.59 -40.82 -0.35 7.30 16 34 H 0.05 0.77 7.93 -51.93 -0.41 0.36 16 35 H 0.05 0.82 7.91 -51.93 -0.41 0.41 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -31.89 357.25 -11.31 -43.21 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.82 Total: 10.85 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -7.03 Total: -18.57 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.14 Total: -53.11 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.89 -11.31 -43.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255094998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.716 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds