Wall clock time and date at job start Tue Mar 31 2020 14:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86797 * 119.99919 * 2 1 4 4 H 1.48504 * 109.46931 * 270.00038 * 3 2 1 5 5 H 1.48500 * 109.47173 * 30.00026 * 3 2 1 6 6 H 1.48496 * 109.46942 * 149.99896 * 3 2 1 7 7 C 1.40026 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99524 * 179.97438 * 7 2 1 9 9 C 1.41311 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78036 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14550 * 180.02562 * 10 9 7 12 12 C 1.38633 * 118.68072 * 359.73974 * 11 10 9 13 13 C 1.39750 * 119.49322 * 0.50846 * 12 11 10 14 14 N 1.38831 * 119.58841 * 179.76259 * 13 12 11 15 15 C 1.46498 * 119.99574 * 0.02562 * 14 13 12 16 16 C 1.52996 * 109.47059 * 179.72445 * 15 14 13 17 17 C 1.50697 * 109.47491 * 179.97438 * 16 15 14 18 18 C 1.34208 * 126.50241 * 265.02801 * 17 16 15 19 19 N 1.36899 * 109.92926 * 179.97438 * 18 17 16 20 20 H 0.96996 * 125.06541 * 179.97438 * 19 18 17 21 21 C 1.37685 * 109.86562 * 359.97438 * 19 18 17 22 22 C 1.39116 * 133.47820 * 180.02562 * 21 19 18 23 23 C 1.37950 * 119.76193 * 179.25341 * 22 21 19 24 24 F 1.35098 * 119.69709 * 180.20413 * 23 22 21 25 25 C 1.39032 * 120.60765 * 0.61909 * 23 22 21 26 26 C 1.36606 * 120.50279 * 359.60679 * 25 23 22 27 27 C 1.39625 * 119.79933 * 359.97438 * 26 25 23 28 28 N 1.31982 * 120.82816 * 359.48094 * 13 12 11 29 29 H 0.97005 * 119.99839 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.43032 * 359.97438 * 10 9 7 31 31 H 1.08001 * 120.65431 * 180.02562 * 11 10 9 32 32 H 1.08000 * 120.25157 * 180.26693 * 12 11 10 33 33 H 0.97001 * 119.99981 * 179.71827 * 14 13 12 34 34 H 1.09004 * 109.46963 * 299.72241 * 15 14 13 35 35 H 1.08994 * 109.47567 * 59.72393 * 15 14 13 36 36 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 37 37 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 38 38 H 1.08011 * 125.03278 * 0.02562 * 18 17 16 39 39 H 1.08002 * 120.12108 * 359.97438 * 22 21 19 40 40 H 1.07997 * 119.74897 * 179.58679 * 25 23 22 41 41 H 1.07997 * 120.09595 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4401 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3009 -2.4364 -0.0005 10 6 2.0084 -3.6513 -0.0016 11 6 1.3034 -4.8417 -0.0022 12 6 -0.0821 -4.7944 0.0039 13 6 -0.7282 -3.5552 -0.0004 14 7 -2.1156 -3.5055 0.0007 15 6 -2.8930 -4.7472 0.0069 16 6 -4.3862 -4.4140 0.0138 17 6 -5.1859 -5.6913 0.0195 18 6 -5.6942 -6.3198 -1.0518 19 7 -6.3594 -7.4497 -0.6580 20 1 -6.8104 -8.0673 -1.2546 21 6 -6.2928 -7.5785 0.7112 22 6 -6.7854 -8.5200 1.6092 23 6 -6.5328 -8.3776 2.9579 24 9 -7.0083 -9.2949 3.8283 25 6 -5.8009 -7.2942 3.4305 26 6 -5.3127 -6.3566 2.5651 27 6 -5.5496 -6.4867 1.1953 28 7 -0.0360 -2.4315 0.0001 29 1 -0.4850 0.8401 -0.0004 30 1 3.0885 -3.6554 -0.0029 31 1 1.8221 -5.7890 -0.0026 32 1 -0.6578 -5.7082 0.0080 33 1 -2.5703 -2.6486 0.0019 34 1 -2.6547 -5.3295 -0.8832 35 1 -2.6459 -5.3262 0.8967 36 1 -4.6245 -3.8318 0.9040 37 1 -4.6335 -3.8350 -0.8760 38 1 -5.5926 -5.9844 -2.0735 39 1 -7.3535 -9.3656 1.2506 40 1 -5.6170 -7.1928 4.4899 41 1 -4.7446 -5.5179 2.9394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255094998.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:01 Heat of formation + Delta-G solvation = 29.546614 kcal Electronic energy + Delta-G solvation = -25284.773762 eV Core-core repulsion = 21464.364542 eV Total energy + Delta-G solvation = -3820.409220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.87738 -42.25186 -40.07960 -37.72595 -37.12432 -35.30765 -33.98636 -32.29135 -31.65615 -30.57388 -29.90535 -28.20571 -27.19089 -24.36239 -24.10668 -23.23304 -22.87294 -22.03839 -20.38638 -19.23948 -19.11065 -18.13512 -17.85327 -17.19458 -16.67686 -16.57960 -16.41130 -16.23619 -15.99148 -15.75717 -15.33524 -14.98366 -14.85023 -14.63502 -14.59764 -14.15502 -13.93743 -13.75068 -13.38827 -13.03545 -12.86688 -12.81128 -12.68757 -12.52031 -12.34714 -12.17051 -12.13857 -11.86734 -11.70332 -11.22907 -10.61789 -10.57574 -9.80155 -9.41772 -9.22664 -8.63374 -8.24762 -8.19904 -6.44945 -0.02469 0.44130 1.09146 1.37215 1.43758 1.56743 1.61251 1.63239 2.11012 2.27622 2.67657 2.80558 2.95624 3.39442 3.68135 3.81924 4.04574 4.08448 4.10866 4.27861 4.30568 4.38944 4.41688 4.55773 4.64318 4.74551 4.80186 4.85572 4.99348 5.01669 5.03072 5.09646 5.14265 5.22132 5.26501 5.41573 5.45180 5.66811 5.74385 5.75386 5.99587 6.08313 6.10462 6.26414 6.59983 6.66525 6.87770 7.00436 7.27410 8.37897 8.54456 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.020277 B = 0.002270 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.548218 B =12333.373537 C =12462.826312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.026 3.974 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.471 4.471 8 H 0.085 0.915 9 C 0.258 3.742 10 C -0.345 4.345 11 C -0.031 4.031 12 C -0.368 4.368 13 C 0.396 3.604 14 N -0.733 5.733 15 C 0.152 3.848 16 C -0.041 4.041 17 C -0.183 4.183 18 C 0.077 3.923 19 N -0.579 5.579 20 H 0.434 0.566 21 C 0.108 3.892 22 C -0.164 4.164 23 C 0.099 3.901 24 F -0.146 7.146 25 C -0.183 4.183 26 C -0.051 4.051 27 C -0.128 4.128 28 N -0.565 5.565 29 H 0.276 0.724 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.114 0.886 33 H 0.395 0.605 34 H 0.052 0.948 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.206 0.794 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.753 -12.319 -0.892 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.503 4.503 8 H 0.103 0.897 9 C 0.131 3.869 10 C -0.368 4.368 11 C -0.055 4.055 12 C -0.394 4.394 13 C 0.155 3.845 14 N -0.369 5.369 15 C 0.027 3.973 16 C -0.079 4.079 17 C -0.190 4.190 18 C -0.050 4.050 19 N -0.182 5.182 20 H 0.274 0.726 21 C -0.001 4.001 22 C -0.185 4.185 23 C 0.078 3.922 24 F -0.124 7.124 25 C -0.203 4.203 26 C -0.070 4.070 27 C -0.133 4.133 28 N -0.288 5.288 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.145 0.855 32 H 0.132 0.868 33 H 0.229 0.771 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.223 0.777 39 H 0.170 0.830 40 H 0.163 0.837 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.500 -11.743 -0.981 21.098 hybrid contribution 0.520 -0.399 0.118 0.666 sum -16.980 -12.143 -0.864 20.893 Atomic orbital electron populations 1.70246 1.08691 1.28672 1.29621 1.26948 0.95782 1.04281 0.92595 0.85168 0.78975 0.75915 0.79334 1.18809 1.19256 1.18189 1.19920 0.94563 0.90504 1.45338 0.89659 1.18685 0.87767 0.93154 0.87283 1.21688 0.98949 0.93800 1.22375 1.20994 0.93767 0.97127 0.93627 1.20925 0.94924 0.96103 1.27407 1.18965 0.86140 0.90132 0.89270 1.44339 1.01324 1.08471 1.82731 1.21169 0.90421 0.85544 1.00147 1.19896 0.90482 0.93778 1.03741 1.20058 1.07806 0.99746 0.91399 1.22194 0.95683 0.86858 1.00246 1.41722 1.48310 1.23736 1.04473 0.72553 1.17863 1.00624 0.96797 0.84841 1.19936 1.06693 1.01546 0.90364 1.17324 0.99091 0.88975 0.86779 1.91471 1.86700 1.65222 1.69034 1.20782 1.02580 0.95189 1.01731 1.20307 0.97216 0.98391 0.91041 1.19435 1.02958 0.97007 0.93923 1.68200 1.07916 1.26058 1.26606 0.91306 0.88040 0.85544 0.86837 0.77097 0.92983 0.94030 0.90938 0.89220 0.77696 0.82992 0.83659 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.69 11.46 21.84 0.25 -40.44 16 2 C 0.03 1.34 5.50 85.29 0.47 1.81 16 3 Si 0.99 38.83 29.56 68.60 2.03 40.86 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 7 C -0.47 -26.49 9.14 23.46 0.21 -26.28 16 8 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.26 14.99 6.55 40.19 0.26 15.26 16 10 C -0.35 -18.04 9.83 22.87 0.22 -17.81 16 11 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 12 C -0.37 -17.01 9.34 22.73 0.21 -16.80 16 13 C 0.40 19.60 7.65 133.40 1.02 20.62 16 14 N -0.73 -28.90 5.72 -345.01 -1.97 -30.87 16 15 C 0.15 4.51 4.87 86.38 0.42 4.93 16 16 C -0.04 -0.91 5.86 29.85 0.17 -0.73 16 17 C -0.18 -3.72 5.57 -18.62 -0.10 -3.82 16 18 C 0.08 1.11 11.73 82.98 0.97 2.08 16 19 N -0.58 -7.59 6.07 -187.58 -1.14 -8.72 16 20 H 0.43 2.65 8.96 -92.71 -0.83 1.82 16 21 C 0.11 2.05 7.27 39.03 0.28 2.33 16 22 C -0.16 -3.00 10.05 22.41 0.23 -2.77 16 23 C 0.10 2.08 7.28 22.39 0.16 2.24 16 24 F -0.15 -3.17 17.25 44.97 0.78 -2.39 16 25 C -0.18 -3.85 9.95 22.08 0.22 -3.63 16 26 C -0.05 -1.14 10.05 22.22 0.22 -0.92 16 27 C -0.13 -2.88 6.35 -20.19 -0.13 -3.00 16 28 N -0.56 -32.23 7.89 -186.60 -1.47 -33.70 16 29 H 0.28 13.48 8.29 -92.70 -0.77 12.71 16 30 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 31 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 32 H 0.11 4.61 6.68 -2.91 -0.02 4.59 16 33 H 0.39 15.44 8.59 -92.71 -0.80 14.65 16 34 H 0.05 1.54 7.93 -2.38 -0.02 1.52 16 35 H 0.04 1.32 7.91 -2.39 -0.02 1.30 16 36 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 40 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -70.60 357.25 3.02 -67.58 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -0.54 Total: 35.39 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 5.08 Total: -27.71 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -4.33 Total: -113.73 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.39 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -70.60 3.02 -67.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255094998.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.127 kcal (2) G-P(sol) polarization free energy of solvation -70.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds