Wall clock time and date at job start Tue Mar 31 2020 13:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42097 * 110.54408 * 2 1 4 4 O 1.42101 * 110.54293 * 223.24755 * 2 1 3 5 5 N 1.65606 * 104.44914 * 111.62769 * 2 1 3 6 6 C 1.46920 * 120.63323 * 89.99399 * 5 2 1 7 7 C 1.53196 * 108.77435 * 126.37256 * 6 5 2 8 8 C 1.53037 * 109.31040 * 54.63686 * 7 6 5 9 9 N 1.46501 * 109.45789 * 178.61881 * 8 7 6 10 10 C 1.38827 * 119.99986 * 205.00010 * 9 8 7 11 11 C 1.39800 * 119.58401 * 0.02562 * 10 9 8 12 12 C 1.38595 * 119.49430 * 179.97438 * 11 10 9 13 13 C 1.38392 * 118.67743 * 359.97438 * 12 11 10 14 14 C 1.40552 * 119.15004 * 0.02562 * 13 12 11 15 15 C 1.41315 * 119.78241 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99880 * 0.02562 * 15 14 13 17 17 C 1.40025 * 119.99696 * 179.97438 * 15 14 13 18 18 N 1.30740 * 120.00186 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99645 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47151 * 60.00415 * 19 17 15 21 21 H 1.48503 * 109.46880 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47076 * 299.99872 * 19 17 15 23 23 N 1.31956 * 119.58879 * 179.72305 * 10 9 8 24 24 C 1.53040 * 109.54181 * 298.63376 * 8 7 6 25 25 C 1.46926 * 120.62726 * 269.98084 * 5 2 1 26 26 H 1.08997 * 109.47305 * 308.37786 * 1 2 3 27 27 H 1.09007 * 109.47006 * 68.37261 * 1 2 3 28 28 H 1.08994 * 109.47207 * 188.37437 * 1 2 3 29 29 H 1.08998 * 109.58534 * 6.58819 * 6 5 2 30 30 H 1.08995 * 109.70522 * 246.22961 * 6 5 2 31 31 H 1.08999 * 109.50112 * 174.59220 * 7 6 5 32 32 H 1.09004 * 109.49641 * 294.68461 * 7 6 5 33 33 H 1.09000 * 109.46257 * 58.65576 * 8 7 6 34 34 H 0.96994 * 120.00329 * 24.99530 * 9 8 7 35 35 H 1.08004 * 120.25395 * 359.94874 * 11 10 9 36 36 H 1.08001 * 120.66114 * 180.02562 * 12 11 10 37 37 H 1.08003 * 120.42289 * 179.97438 * 13 12 11 38 38 H 0.97005 * 119.99808 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.49938 * 301.42120 * 24 8 7 40 40 H 1.08991 * 109.50504 * 181.31767 * 24 8 7 41 41 H 1.08998 * 109.58617 * 353.41022 * 25 5 2 42 42 H 1.08995 * 109.59240 * 113.83799 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5911 1.4908 6 6 2.4139 -2.0334 1.6988 7 6 3.7922 -2.2669 2.3254 8 6 3.9182 -1.4268 3.5984 9 7 5.2226 -1.6728 4.2182 10 6 5.3927 -1.4706 5.5811 11 6 4.3131 -1.0328 6.3539 12 6 4.4848 -0.8321 7.7145 13 6 5.7293 -1.0739 8.2696 14 6 6.7754 -1.5129 7.4400 15 6 8.0514 -1.7644 7.9928 16 1 8.2200 -1.6195 9.0497 17 6 9.0967 -2.2024 7.1705 18 7 8.8921 -2.3792 5.8914 19 14 10.7836 -2.5341 7.9013 20 1 10.6748 -3.5923 8.9375 21 1 11.7077 -2.9836 6.8293 22 1 11.3094 -1.2897 8.5178 23 7 6.5697 -1.6999 6.1320 24 6 3.7927 0.0573 3.2467 25 6 2.4144 0.3171 2.6305 26 1 -0.3634 0.6380 0.8056 27 1 -0.3633 0.3788 -0.9554 28 1 -0.3633 -1.0166 0.1497 29 1 2.3553 -2.5512 0.7414 30 1 1.6400 -2.4116 2.3667 31 1 3.9051 -3.3223 2.5733 32 1 4.5679 -1.9740 1.6178 33 1 3.1272 -1.7030 4.2956 34 1 5.9675 -1.9769 3.6764 35 1 3.3527 -0.8518 5.8942 36 1 3.6636 -0.4945 8.3293 37 1 5.8946 -0.9263 9.3266 38 1 9.6164 -2.6823 5.3217 39 1 4.5683 0.3284 2.5304 40 1 3.9059 0.6562 4.1503 41 1 2.3562 1.3502 2.2879 42 1 1.6404 0.1329 3.3755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645687319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:39 Heat of formation + Delta-G solvation = -26.086772 kcal Electronic energy + Delta-G solvation = -25574.925406 eV Core-core repulsion = 21875.174903 eV Total energy + Delta-G solvation = -3699.750503 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.09891 -37.83918 -37.38847 -36.15496 -34.91224 -33.29694 -31.20661 -31.08809 -30.12545 -29.76407 -28.16881 -25.39542 -23.87824 -23.42315 -21.53189 -20.77260 -20.07344 -18.94719 -18.00578 -17.31210 -16.58756 -16.33304 -16.12330 -15.16482 -14.84752 -14.79302 -14.46292 -14.26474 -14.06430 -13.73868 -13.53403 -13.50192 -13.31399 -12.84054 -12.62752 -12.38328 -12.31736 -12.26027 -11.99845 -11.88738 -11.44842 -11.31950 -11.23892 -11.18951 -10.99066 -10.77655 -10.65044 -10.40390 -10.32380 -9.91626 -9.46170 -9.21220 -8.86703 -7.90105 -7.48729 -6.49650 -6.30803 -4.45827 -0.02020 2.36855 2.90592 3.11762 3.14235 3.25426 3.31960 3.63224 3.84831 3.99747 4.10317 4.33414 4.57647 4.58662 4.83296 4.94050 5.04885 5.10757 5.27049 5.30029 5.35022 5.53550 5.62399 5.65033 5.82721 5.95093 6.07679 6.16078 6.17248 6.22568 6.40393 6.52690 6.65382 6.87076 6.91380 6.97267 7.27104 7.61517 7.82999 7.93974 8.18244 8.39242 8.70873 8.82262 9.14230 10.26822 10.42404 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.024839 B = 0.002763 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.977704 B =10132.086631 C =10738.996779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.610 3.390 3 O -0.954 6.954 4 O -0.956 6.956 5 N -0.999 5.999 6 C 0.124 3.876 7 C -0.138 4.138 8 C 0.169 3.831 9 N -0.734 5.734 10 C 0.413 3.587 11 C -0.368 4.368 12 C -0.032 4.032 13 C -0.318 4.318 14 C 0.293 3.707 15 C -0.435 4.435 16 H 0.082 0.918 17 C 0.071 3.929 18 N -0.715 5.715 19 Si 0.905 3.095 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.266 1.266 23 N -0.532 5.532 24 C -0.147 4.147 25 C 0.121 3.879 26 H 0.127 0.873 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.395 0.605 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.270 0.730 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.625 1.777 -10.804 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.703 3.297 3 O -0.944 6.944 4 O -0.946 6.946 5 N -0.838 5.838 6 C -0.002 4.002 7 C -0.178 4.178 8 C 0.062 3.938 9 N -0.369 5.369 10 C 0.173 3.827 11 C -0.394 4.394 12 C -0.057 4.057 13 C -0.341 4.341 14 C 0.166 3.834 15 C -0.467 4.467 16 H 0.100 0.900 17 C -0.154 4.154 18 N -0.337 5.337 19 Si 0.729 3.271 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.190 1.190 23 N -0.254 5.254 24 C -0.187 4.187 25 C -0.005 4.005 26 H 0.146 0.854 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.230 0.770 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.434 1.735 -12.170 18.960 hybrid contribution -0.388 -0.039 0.990 1.065 sum -14.822 1.696 -11.179 18.643 Atomic orbital electron populations 1.30608 1.29143 1.11480 1.11192 1.04879 0.77567 0.74090 0.73175 1.93610 1.77366 1.37840 1.85629 1.93601 1.77431 1.61659 1.61940 1.57712 1.84074 1.14653 1.27332 1.21423 0.97565 0.79226 1.01990 1.22123 0.97199 1.01042 0.97429 1.20552 0.87236 0.93001 0.93031 1.44221 1.11051 1.75990 1.05650 1.18532 0.90527 0.89452 0.84172 1.20604 0.98412 1.25441 0.94962 1.20588 0.95680 0.95438 0.93947 1.21525 0.95176 1.18212 0.99214 1.18182 0.92194 0.86686 0.86335 1.19547 0.93133 1.38375 0.95624 0.89995 1.26043 1.00561 0.94124 0.94656 1.70138 1.31947 1.27205 1.04380 0.86442 0.81400 0.79686 0.79533 1.19039 1.20369 1.19037 1.68218 1.18392 1.26115 1.12653 1.22409 0.96121 0.98614 1.01603 1.21505 0.98227 0.93192 0.87548 0.85414 0.85707 0.85460 0.88723 0.91138 0.90040 0.90907 0.90516 0.77042 0.89109 0.89076 0.88831 0.91889 0.91311 0.89872 0.88896 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.29 10.99 101.05 1.11 -2.18 16 2 S 2.61 23.78 6.09 -107.50 -0.66 23.12 16 3 O -0.95 -12.08 16.59 -57.54 -0.95 -13.04 16 4 O -0.96 -11.71 16.59 -57.54 -0.95 -12.66 16 5 N -1.00 -9.32 3.22 -113.52 -0.37 -9.68 16 6 C 0.12 1.12 6.43 -3.71 -0.02 1.09 16 7 C -0.14 -1.63 5.55 -26.61 -0.15 -1.78 16 8 C 0.17 2.45 2.10 -67.89 -0.14 2.31 16 9 N -0.73 -14.18 5.24 -53.86 -0.28 -14.46 16 10 C 0.41 9.81 7.63 -155.32 -1.18 8.63 16 11 C -0.37 -8.16 8.83 -38.87 -0.34 -8.50 16 12 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 13 C -0.32 -8.01 9.83 -38.65 -0.38 -8.39 16 14 C 0.29 8.14 6.55 -85.00 -0.56 7.58 16 15 C -0.43 -11.81 9.14 -37.74 -0.34 -12.15 16 16 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 17 C 0.07 1.83 5.50 -17.35 -0.10 1.74 16 18 N -0.72 -19.06 11.46 55.55 0.64 -18.42 16 19 Si 0.91 18.84 29.56 -169.99 -5.02 13.81 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 23 N -0.53 -14.59 7.89 -10.33 -0.08 -14.67 16 24 C -0.15 -1.99 5.56 -26.61 -0.15 -2.14 16 25 C 0.12 1.21 6.43 -3.71 -0.02 1.19 16 26 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.12 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.78 6.86 -51.93 -0.36 0.42 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.12 6.43 -51.93 -0.33 0.79 16 34 H 0.39 7.81 8.72 -40.82 -0.36 7.45 16 35 H 0.09 1.74 6.06 -52.48 -0.32 1.43 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 38 H 0.27 6.58 8.29 -40.82 -0.34 6.24 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.26 7.66 -51.93 -0.40 0.86 16 41 H 0.09 0.89 6.86 -51.93 -0.36 0.54 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -34.39 352.62 -10.94 -45.33 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.89 Total: 9.09 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -2.68 Total: -13.73 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.09 Total: -57.24 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -1.91 Total: -25.70 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.81 kcal Atomic # 16 Polarization: 23.78 SS G_CDS: -0.66 Total: 23.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.39 -10.94 -45.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645687319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.245 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds