Wall clock time and date at job start Tue Mar 31 2020 13:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42097 * 110.54408 * 2 1 4 4 O 1.42101 * 110.54293 * 223.24755 * 2 1 3 5 5 N 1.65606 * 104.44914 * 111.62769 * 2 1 3 6 6 C 1.46920 * 120.63323 * 89.99399 * 5 2 1 7 7 C 1.53196 * 108.77435 * 126.37256 * 6 5 2 8 8 C 1.53037 * 109.31040 * 54.63686 * 7 6 5 9 9 N 1.46501 * 109.45789 * 178.61881 * 8 7 6 10 10 C 1.38827 * 119.99986 * 205.00010 * 9 8 7 11 11 C 1.39800 * 119.58401 * 0.02562 * 10 9 8 12 12 C 1.38595 * 119.49430 * 179.97438 * 11 10 9 13 13 C 1.38392 * 118.67743 * 359.97438 * 12 11 10 14 14 C 1.40552 * 119.15004 * 0.02562 * 13 12 11 15 15 C 1.41315 * 119.78241 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99880 * 0.02562 * 15 14 13 17 17 C 1.40025 * 119.99696 * 179.97438 * 15 14 13 18 18 N 1.30740 * 120.00186 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99645 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47151 * 60.00415 * 19 17 15 21 21 H 1.48503 * 109.46880 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47076 * 299.99872 * 19 17 15 23 23 N 1.31956 * 119.58879 * 179.72305 * 10 9 8 24 24 C 1.53040 * 109.54181 * 298.63376 * 8 7 6 25 25 C 1.46926 * 120.62726 * 269.98084 * 5 2 1 26 26 H 1.08997 * 109.47305 * 308.37786 * 1 2 3 27 27 H 1.09007 * 109.47006 * 68.37261 * 1 2 3 28 28 H 1.08994 * 109.47207 * 188.37437 * 1 2 3 29 29 H 1.08998 * 109.58534 * 6.58819 * 6 5 2 30 30 H 1.08995 * 109.70522 * 246.22961 * 6 5 2 31 31 H 1.08999 * 109.50112 * 174.59220 * 7 6 5 32 32 H 1.09004 * 109.49641 * 294.68461 * 7 6 5 33 33 H 1.09000 * 109.46257 * 58.65576 * 8 7 6 34 34 H 0.96994 * 120.00329 * 24.99530 * 9 8 7 35 35 H 1.08004 * 120.25395 * 359.94874 * 11 10 9 36 36 H 1.08001 * 120.66114 * 180.02562 * 12 11 10 37 37 H 1.08003 * 120.42289 * 179.97438 * 13 12 11 38 38 H 0.97005 * 119.99808 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.49938 * 301.42120 * 24 8 7 40 40 H 1.08991 * 109.50504 * 181.31767 * 24 8 7 41 41 H 1.08998 * 109.58617 * 353.41022 * 25 5 2 42 42 H 1.08995 * 109.59240 * 113.83799 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5911 1.4908 6 6 2.4139 -2.0334 1.6988 7 6 3.7922 -2.2669 2.3254 8 6 3.9182 -1.4268 3.5984 9 7 5.2226 -1.6728 4.2182 10 6 5.3927 -1.4706 5.5811 11 6 4.3131 -1.0328 6.3539 12 6 4.4848 -0.8321 7.7145 13 6 5.7293 -1.0739 8.2696 14 6 6.7754 -1.5129 7.4400 15 6 8.0514 -1.7644 7.9928 16 1 8.2200 -1.6195 9.0497 17 6 9.0967 -2.2024 7.1705 18 7 8.8921 -2.3792 5.8914 19 14 10.7836 -2.5341 7.9013 20 1 10.6748 -3.5923 8.9375 21 1 11.7077 -2.9836 6.8293 22 1 11.3094 -1.2897 8.5178 23 7 6.5697 -1.6999 6.1320 24 6 3.7927 0.0573 3.2467 25 6 2.4144 0.3171 2.6305 26 1 -0.3634 0.6380 0.8056 27 1 -0.3633 0.3788 -0.9554 28 1 -0.3633 -1.0166 0.1497 29 1 2.3553 -2.5512 0.7414 30 1 1.6400 -2.4116 2.3667 31 1 3.9051 -3.3223 2.5733 32 1 4.5679 -1.9740 1.6178 33 1 3.1272 -1.7030 4.2956 34 1 5.9675 -1.9769 3.6764 35 1 3.3527 -0.8518 5.8942 36 1 3.6636 -0.4945 8.3293 37 1 5.8946 -0.9263 9.3266 38 1 9.6164 -2.6823 5.3217 39 1 4.5683 0.3284 2.5304 40 1 3.9059 0.6562 4.1503 41 1 2.3562 1.3502 2.2879 42 1 1.6404 0.1329 3.3755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645687319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:38 Heat of formation + Delta-G solvation = -51.048768 kcal Electronic energy + Delta-G solvation = -25576.007840 eV Core-core repulsion = 21875.174903 eV Total energy + Delta-G solvation = -3700.832936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.45523 -39.30804 -38.20488 -36.98073 -36.33290 -35.07927 -32.63116 -32.12747 -31.80403 -30.26317 -29.76943 -27.27674 -24.95396 -24.38801 -23.30814 -22.27661 -21.36377 -19.76804 -19.25857 -18.72551 -17.91781 -17.24173 -17.04402 -16.70326 -16.49304 -16.05369 -15.59414 -15.35355 -15.21669 -15.07306 -14.81717 -14.27687 -14.16971 -13.90575 -13.89255 -13.64326 -13.43165 -13.41854 -13.14618 -12.91404 -12.86766 -12.73395 -12.60026 -12.51036 -12.13793 -12.05744 -12.04379 -11.83510 -11.70693 -11.42680 -11.20443 -10.58410 -9.96129 -9.80024 -9.40425 -8.24830 -8.20643 -6.45544 -0.67508 1.09898 1.39295 1.40777 1.52640 1.60015 1.67680 2.25112 2.65990 2.94654 3.02635 3.19174 3.65038 3.89792 3.97032 4.11695 4.13371 4.18462 4.27487 4.31706 4.44332 4.45290 4.58031 4.75115 4.83637 4.86190 4.88525 4.97237 4.98706 5.02972 5.04502 5.17430 5.21487 5.26889 5.35066 5.44622 5.66795 5.76066 6.01011 6.12942 6.24875 6.61505 6.86259 6.98296 7.26033 8.38328 8.53618 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.024839 B = 0.002763 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.977704 B =10132.086631 C =10738.996779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.608 3.392 3 O -1.000 7.000 4 O -0.996 6.996 5 N -1.002 6.002 6 C 0.126 3.874 7 C -0.136 4.136 8 C 0.166 3.834 9 N -0.732 5.732 10 C 0.396 3.604 11 C -0.360 4.360 12 C -0.030 4.030 13 C -0.348 4.348 14 C 0.260 3.740 15 C -0.475 4.475 16 H 0.085 0.915 17 C 0.026 3.974 18 N -0.753 5.753 19 Si 0.984 3.016 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.261 1.261 23 N -0.570 5.570 24 C -0.145 4.145 25 C 0.127 3.873 26 H 0.149 0.851 27 H 0.142 0.858 28 H 0.152 0.848 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.388 0.612 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.274 0.726 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.616 1.623 -11.074 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.707 3.293 3 O -0.990 6.990 4 O -0.987 6.987 5 N -0.840 5.840 6 C 0.001 3.999 7 C -0.176 4.176 8 C 0.061 3.939 9 N -0.365 5.365 10 C 0.155 3.845 11 C -0.385 4.385 12 C -0.054 4.054 13 C -0.371 4.371 14 C 0.132 3.868 15 C -0.507 4.507 16 H 0.103 0.897 17 C -0.196 4.196 18 N -0.375 5.375 19 Si 0.805 3.195 20 H -0.183 1.183 21 H -0.195 1.195 22 H -0.185 1.185 23 N -0.292 5.292 24 C -0.185 4.185 25 C 0.001 3.999 26 H 0.168 0.832 27 H 0.161 0.839 28 H 0.170 0.830 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.221 0.779 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.117 0.883 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.424 1.588 -12.470 21.485 hybrid contribution 0.343 0.049 0.974 1.034 sum -17.081 1.637 -11.496 20.654 Atomic orbital electron populations 1.30321 1.22399 1.13879 1.13224 1.04676 0.79783 0.72464 0.72365 1.93552 1.79813 1.39685 1.85976 1.93548 1.79773 1.62305 1.63047 1.57592 1.84954 1.14574 1.26844 1.21518 0.96239 0.79236 1.02950 1.22112 0.99023 1.00624 0.95806 1.20860 0.84926 0.94123 0.94029 1.44502 1.12748 1.75042 1.04196 1.19004 0.90318 0.89214 0.85927 1.20978 0.99254 1.23440 0.94839 1.21024 0.95773 0.93975 0.94607 1.21680 0.96034 1.19850 0.99512 1.18648 0.93405 0.87523 0.87190 1.19899 0.94227 1.40350 0.96201 0.89714 1.26942 1.04454 0.93287 0.94884 1.70249 1.33385 1.28134 1.05745 0.85245 0.75887 0.79629 0.78759 1.18321 1.19456 1.18502 1.68175 1.20490 1.27581 1.12990 1.22337 0.98200 0.97487 1.00525 1.21474 0.96423 0.93670 0.88300 0.83228 0.83934 0.82994 0.87814 0.87875 0.89705 0.92626 0.89621 0.77870 0.85628 0.85201 0.88258 0.91509 0.93657 0.91624 0.88583 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -3.18 10.99 113.37 1.25 -1.94 16 2 S 2.61 42.71 6.09 -56.49 -0.34 42.36 16 3 O -1.00 -24.76 16.59 -127.65 -2.12 -26.88 16 4 O -1.00 -23.52 16.59 -127.65 -2.12 -25.64 16 5 N -1.00 -16.29 3.22 -513.08 -1.65 -17.94 16 6 C 0.13 1.93 6.43 86.37 0.56 2.49 16 7 C -0.14 -3.09 5.55 30.67 0.17 -2.92 16 8 C 0.17 4.67 2.10 45.02 0.09 4.76 16 9 N -0.73 -28.83 5.24 -324.32 -1.70 -30.53 16 10 C 0.40 19.11 7.63 133.42 1.02 20.13 16 11 C -0.36 -15.49 8.83 22.73 0.20 -15.29 16 12 C -0.03 -1.31 10.15 22.39 0.23 -1.08 16 13 C -0.35 -17.81 9.83 22.87 0.22 -17.59 16 14 C 0.26 14.99 6.55 40.18 0.26 15.25 16 15 C -0.47 -26.87 9.14 23.46 0.21 -26.65 16 16 H 0.08 4.50 7.85 -2.91 -0.02 4.48 16 17 C 0.03 1.37 5.50 85.29 0.47 1.84 16 18 N -0.75 -41.78 11.46 21.84 0.25 -41.53 16 19 Si 0.98 39.62 29.56 68.60 2.03 41.65 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 21 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 N -0.57 -32.44 7.89 -186.59 -1.47 -33.92 16 24 C -0.14 -3.87 5.56 30.67 0.17 -3.70 16 25 C 0.13 2.25 6.43 86.36 0.56 2.81 16 26 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.14 0.38 8.14 -2.39 -0.02 0.37 16 28 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.10 1.46 6.86 -2.39 -0.02 1.44 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.09 2.28 6.43 -2.39 -0.02 2.26 16 34 H 0.39 16.11 8.72 -92.71 -0.81 15.30 16 35 H 0.13 4.44 6.06 -2.91 -0.02 4.42 16 36 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 37 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.27 13.88 8.29 -92.70 -0.77 13.11 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.97 7.66 -2.39 -0.02 1.95 16 41 H 0.10 1.68 6.86 -2.39 -0.02 1.67 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -79.74 352.62 -1.48 -81.22 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.23 Total: 33.11 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 5.41 Total: -21.89 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -4.57 Total: -123.93 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -4.23 Total: -52.52 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Atomic # 16 Polarization: 42.71 SS G_CDS: -0.34 Total: 42.36 kcal Total: -79.74 -1.48 -81.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645687319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.174 kcal (2) G-P(sol) polarization free energy of solvation -79.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds