Wall clock time and date at job start Tue Mar 31 2020 15:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48495 * 109.47153 * 240.00127 * 3 2 1 5 5 H 1.48496 * 109.46954 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46981 * 120.00330 * 3 2 1 7 7 C 1.40227 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00705 * 197.87487 * 7 2 1 9 9 C 1.41110 * 119.99817 * 17.86145 * 7 2 1 10 10 C 1.40891 * 120.10584 * 204.63857 * 9 7 2 11 11 C 1.36313 * 119.89411 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.10651 * 0.02771 * 11 10 9 13 13 C 1.47639 * 119.89691 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99829 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00296 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00095 * 179.72442 * 15 13 12 17 17 H 1.08999 * 109.47340 * 35.27258 * 16 15 13 18 18 C 1.53001 * 109.46934 * 275.26918 * 16 15 13 19 19 C 1.52996 * 109.47083 * 65.00100 * 18 16 15 20 20 O 1.42902 * 109.47281 * 180.02562 * 19 18 16 21 21 C 1.50703 * 109.47155 * 155.27121 * 16 15 13 22 22 C 1.38238 * 119.99896 * 39.72341 * 21 16 15 23 23 C 1.38233 * 119.99772 * 179.78600 * 22 21 16 24 24 C 1.38234 * 120.00211 * 0.44551 * 23 22 21 25 25 C 1.38234 * 119.99737 * 359.81282 * 24 23 22 26 26 C 1.38234 * 119.99983 * 219.99792 * 21 16 15 27 27 C 1.40014 * 120.20905 * 0.22546 * 12 11 10 28 28 C 1.36318 * 120.10429 * 359.48789 * 27 12 11 29 29 H 0.96997 * 120.00447 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.05369 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.94759 * 179.97438 * 11 10 9 32 32 H 0.97003 * 119.99585 * 359.97438 * 15 13 12 33 33 H 1.08997 * 109.46812 * 185.00206 * 18 16 15 34 34 H 1.09000 * 109.47113 * 304.99958 * 18 16 15 35 35 H 1.09000 * 109.47225 * 300.00275 * 19 18 16 36 36 H 1.09000 * 109.47262 * 59.99949 * 19 18 16 37 37 H 0.96702 * 114.00194 * 180.02562 * 20 19 18 38 38 H 1.08008 * 120.00025 * 0.02562 * 22 21 16 39 39 H 1.08003 * 119.99682 * 180.27562 * 23 22 21 40 40 H 1.07999 * 120.00100 * 179.83292 * 24 23 22 41 41 H 1.08004 * 119.99936 * 180.02562 * 25 24 23 42 42 H 1.07997 * 120.00149 * 359.97438 * 26 21 16 43 43 H 1.08001 * 119.94847 * 179.72181 * 27 12 11 44 44 H 1.07999 * 120.05287 * 180.25102 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2754 2.7464 0.0006 6 1 3.0942 1.6963 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0485 -1.2371 0.2865 9 6 1.3531 -2.4068 -0.3759 10 6 1.8267 -3.6495 0.0893 11 6 1.1914 -4.7988 -0.2764 12 6 0.0703 -4.7457 -1.1135 13 6 -0.6138 -5.9934 -1.5072 14 8 -0.2032 -7.0648 -1.1049 15 7 -1.6929 -5.9449 -2.3133 16 6 -2.3681 -7.1834 -2.7088 17 1 -2.3363 -7.8942 -1.8830 18 6 -1.6611 -7.7834 -3.9257 19 6 -0.2422 -8.2026 -3.5360 20 8 0.4183 -8.7625 -4.6727 21 6 -3.8030 -6.8836 -3.0586 22 6 -4.1180 -5.7340 -3.7586 23 6 -5.4337 -5.4612 -4.0833 24 6 -6.4353 -6.3335 -3.7001 25 6 -6.1208 -7.4804 -2.9955 26 6 -4.8046 -7.7554 -2.6746 27 6 -0.4009 -3.5136 -1.5827 28 6 0.2243 -2.3585 -1.2176 29 1 -0.4851 0.8400 0.0004 30 1 2.6916 -3.6915 0.7347 31 1 1.5540 -5.7518 0.0794 32 1 -2.0202 -5.0901 -2.6345 33 1 -2.2147 -8.6552 -4.2743 34 1 -1.6146 -7.0404 -4.7219 35 1 0.3114 -7.3308 -3.1874 36 1 -0.2887 -8.9457 -2.7398 37 1 1.3246 -9.0513 -4.4984 38 1 -3.3358 -5.0508 -4.0551 39 1 -5.6794 -4.5653 -4.6340 40 1 -7.4635 -6.1190 -3.9515 41 1 -6.9033 -8.1621 -2.6965 42 1 -4.5589 -8.6516 -2.1243 43 1 -1.2633 -3.4779 -2.2318 44 1 -0.1423 -1.4083 -1.5768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341853708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:42 Heat of formation + Delta-G solvation = -53.775666 kcal Electronic energy + Delta-G solvation = -26546.125555 eV Core-core repulsion = 22813.270764 eV Total energy + Delta-G solvation = -3732.854791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.11986 -38.83146 -37.36649 -36.57259 -35.07994 -33.91361 -31.85473 -30.98563 -30.35852 -29.83672 -29.47478 -26.26475 -25.13737 -22.89228 -22.18066 -21.94867 -21.05667 -20.38677 -19.58764 -17.64362 -17.52665 -17.14151 -16.38499 -16.16593 -15.46264 -15.24685 -14.88950 -14.52648 -14.14638 -14.00856 -13.98597 -13.60233 -13.50109 -13.24570 -13.01956 -12.82012 -12.61341 -12.27746 -12.14635 -11.91750 -11.54003 -11.41572 -11.38332 -11.29133 -11.06944 -11.00785 -10.70904 -10.63316 -10.09667 -9.69224 -9.59372 -9.38011 -9.11121 -9.03751 -8.83051 -8.66685 -7.76150 -7.58437 -7.07064 -4.64071 1.19714 1.28066 2.18736 2.89885 2.92155 2.96090 3.00109 3.57014 3.70775 3.77412 3.83091 4.24665 4.51391 4.74219 4.76222 4.88856 4.99657 5.17783 5.32161 5.36519 5.39219 5.52947 5.55956 5.68420 5.84391 5.86448 5.92677 5.99049 6.01857 6.19115 6.24576 6.27731 6.33089 6.38543 6.47004 6.73269 6.78907 6.85929 6.88815 7.01958 7.09554 7.39409 7.60977 7.74742 7.77780 7.82092 8.03233 8.16750 8.36017 8.59300 8.71443 8.99552 9.84795 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012895 B = 0.003129 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.919927 B = 8946.829206 C =10434.092252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.240 4.240 11 C -0.020 4.020 12 C -0.287 4.287 13 C 0.574 3.426 14 O -0.573 6.573 15 N -0.736 5.736 16 C 0.191 3.809 17 H 0.095 0.905 18 C -0.121 4.121 19 C 0.079 3.921 20 O -0.585 6.585 21 C -0.084 4.084 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.119 4.119 26 C -0.108 4.108 27 C -0.062 4.062 28 C -0.178 4.178 29 H 0.287 0.713 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.397 0.603 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.377 0.623 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.087 0.913 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 -7.657 -7.061 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.040 4.040 12 C -0.291 4.291 13 C 0.370 3.630 14 O -0.456 6.456 15 N -0.389 5.389 16 C 0.085 3.915 17 H 0.113 0.887 18 C -0.160 4.160 19 C 0.002 3.998 20 O -0.391 6.391 21 C -0.085 4.085 22 C -0.129 4.129 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.137 4.137 26 C -0.127 4.127 27 C -0.081 4.081 28 C -0.197 4.197 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.234 0.766 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.224 0.776 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.105 0.895 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.452 -8.107 -7.030 14.300 hybrid contribution 0.525 1.170 0.203 1.298 sum -8.927 -6.937 -6.827 13.207 Atomic orbital electron populations 1.69729 1.07922 1.30221 1.31462 1.26102 0.94816 1.01904 0.91877 0.86256 0.80219 0.79413 0.80374 1.18445 1.20021 1.18644 1.19836 0.98433 0.91231 1.37456 0.89713 1.17781 0.90343 0.92161 0.87102 1.20715 1.04646 0.92666 1.07887 1.20342 0.92877 0.97115 0.93636 1.18865 1.04614 0.90981 1.14650 1.18554 0.78563 0.89709 0.76210 1.90625 1.66433 1.31465 1.57047 1.46099 1.31873 1.08434 1.52543 1.19592 0.86990 0.88077 0.96818 0.88714 1.21909 0.95155 1.01110 0.97823 1.22355 0.92923 0.97906 0.86652 1.86362 1.31338 1.83538 1.37836 1.19930 0.94659 0.95478 0.98427 1.21002 0.96787 0.96846 0.98260 1.21146 0.92779 0.99522 0.99953 1.21163 0.99248 0.94873 0.98796 1.21120 0.96217 0.97507 0.98843 1.21018 0.92473 0.99393 0.99786 1.20462 0.97285 0.92656 0.97735 1.20971 0.99924 0.96897 1.01913 0.90125 0.88401 0.88122 0.76593 0.90860 0.91136 0.92317 0.93144 0.77621 0.85940 0.85884 0.86152 0.86004 0.85818 0.89492 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.21 10.95 55.56 0.61 -17.60 16 2 C 0.07 1.71 5.14 -17.31 -0.09 1.63 16 3 Si 0.91 17.04 29.60 -169.99 -5.03 12.01 16 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 5 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.44 -10.84 9.04 -37.75 -0.34 -11.18 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.13 3.24 5.58 -106.80 -0.60 2.65 16 10 C -0.24 -5.69 9.73 -39.27 -0.38 -6.08 16 11 C -0.02 -0.47 9.52 -39.61 -0.38 -0.85 16 12 C -0.29 -6.35 5.89 -104.73 -0.62 -6.96 16 13 C 0.57 11.53 6.32 -12.42 -0.08 11.45 16 14 O -0.57 -12.39 13.44 5.29 0.07 -12.32 16 15 N -0.74 -11.98 4.93 -55.94 -0.28 -12.25 16 16 C 0.19 2.70 2.46 -69.08 -0.17 2.53 16 17 H 0.09 1.44 7.44 -51.93 -0.39 1.05 16 18 C -0.12 -1.69 5.24 -26.73 -0.14 -1.83 16 19 C 0.08 1.23 5.64 37.16 0.21 1.44 16 20 O -0.59 -8.54 13.66 -35.23 -0.48 -9.02 16 21 C -0.08 -1.05 4.96 -104.62 -0.52 -1.57 16 22 C -0.11 -1.30 9.06 -39.58 -0.36 -1.66 16 23 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 26 C -0.11 -1.20 9.67 -39.58 -0.38 -1.59 16 27 C -0.06 -1.35 9.47 -39.61 -0.38 -1.73 16 28 C -0.18 -4.28 8.64 -39.27 -0.34 -4.62 16 29 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 30 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 31 H 0.10 2.22 7.63 -52.49 -0.40 1.81 16 32 H 0.40 6.00 4.86 -40.82 -0.20 5.80 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.06 5.63 -51.93 -0.29 0.77 16 36 H 0.05 0.80 7.84 -51.93 -0.41 0.39 16 37 H 0.38 3.96 9.12 45.56 0.42 4.38 16 38 H 0.12 1.35 6.90 -52.48 -0.36 0.99 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 43 H 0.09 1.61 6.37 -52.49 -0.33 1.28 16 44 H 0.12 2.93 6.16 -52.49 -0.32 2.60 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -28.52 365.10 -10.15 -38.67 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -4.80 Total: 18.15 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -5.75 Total: -23.13 kcal Atomic # 7 Polarization: -30.19 SS G_CDS: 0.33 Total: -29.86 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.41 Total: -21.34 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.52 -10.15 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341853708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.108 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds