Wall clock time and date at job start Tue Mar 31 2020 15:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48495 * 109.47153 * 240.00127 * 3 2 1 5 5 H 1.48496 * 109.46954 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46981 * 120.00330 * 3 2 1 7 7 C 1.40227 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00705 * 197.87487 * 7 2 1 9 9 C 1.41110 * 119.99817 * 17.86145 * 7 2 1 10 10 C 1.40891 * 120.10584 * 204.63857 * 9 7 2 11 11 C 1.36313 * 119.89411 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.10651 * 0.02771 * 11 10 9 13 13 C 1.47639 * 119.89691 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99829 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00296 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00095 * 179.72442 * 15 13 12 17 17 H 1.08999 * 109.47340 * 35.27258 * 16 15 13 18 18 C 1.53001 * 109.46934 * 275.26918 * 16 15 13 19 19 C 1.52996 * 109.47083 * 65.00100 * 18 16 15 20 20 O 1.42902 * 109.47281 * 180.02562 * 19 18 16 21 21 C 1.50703 * 109.47155 * 155.27121 * 16 15 13 22 22 C 1.38238 * 119.99896 * 39.72341 * 21 16 15 23 23 C 1.38233 * 119.99772 * 179.78600 * 22 21 16 24 24 C 1.38234 * 120.00211 * 0.44551 * 23 22 21 25 25 C 1.38234 * 119.99737 * 359.81282 * 24 23 22 26 26 C 1.38234 * 119.99983 * 219.99792 * 21 16 15 27 27 C 1.40014 * 120.20905 * 0.22546 * 12 11 10 28 28 C 1.36318 * 120.10429 * 359.48789 * 27 12 11 29 29 H 0.96997 * 120.00447 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.05369 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.94759 * 179.97438 * 11 10 9 32 32 H 0.97003 * 119.99585 * 359.97438 * 15 13 12 33 33 H 1.08997 * 109.46812 * 185.00206 * 18 16 15 34 34 H 1.09000 * 109.47113 * 304.99958 * 18 16 15 35 35 H 1.09000 * 109.47225 * 300.00275 * 19 18 16 36 36 H 1.09000 * 109.47262 * 59.99949 * 19 18 16 37 37 H 0.96702 * 114.00194 * 180.02562 * 20 19 18 38 38 H 1.08008 * 120.00025 * 0.02562 * 22 21 16 39 39 H 1.08003 * 119.99682 * 180.27562 * 23 22 21 40 40 H 1.07999 * 120.00100 * 179.83292 * 24 23 22 41 41 H 1.08004 * 119.99936 * 180.02562 * 25 24 23 42 42 H 1.07997 * 120.00149 * 359.97438 * 26 21 16 43 43 H 1.08001 * 119.94847 * 179.72181 * 27 12 11 44 44 H 1.07999 * 120.05287 * 180.25102 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0941 1.6964 -1.2125 5 1 1.2754 2.7464 0.0006 6 1 3.0942 1.6963 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0485 -1.2371 0.2865 9 6 1.3531 -2.4068 -0.3759 10 6 1.8267 -3.6495 0.0893 11 6 1.1914 -4.7988 -0.2764 12 6 0.0703 -4.7457 -1.1135 13 6 -0.6138 -5.9934 -1.5072 14 8 -0.2032 -7.0648 -1.1049 15 7 -1.6929 -5.9449 -2.3133 16 6 -2.3681 -7.1834 -2.7088 17 1 -2.3363 -7.8942 -1.8830 18 6 -1.6611 -7.7834 -3.9257 19 6 -0.2422 -8.2026 -3.5360 20 8 0.4183 -8.7625 -4.6727 21 6 -3.8030 -6.8836 -3.0586 22 6 -4.1180 -5.7340 -3.7586 23 6 -5.4337 -5.4612 -4.0833 24 6 -6.4353 -6.3335 -3.7001 25 6 -6.1208 -7.4804 -2.9955 26 6 -4.8046 -7.7554 -2.6746 27 6 -0.4009 -3.5136 -1.5827 28 6 0.2243 -2.3585 -1.2176 29 1 -0.4851 0.8400 0.0004 30 1 2.6916 -3.6915 0.7347 31 1 1.5540 -5.7518 0.0794 32 1 -2.0202 -5.0901 -2.6345 33 1 -2.2147 -8.6552 -4.2743 34 1 -1.6146 -7.0404 -4.7219 35 1 0.3114 -7.3308 -3.1874 36 1 -0.2887 -8.9457 -2.7398 37 1 1.3246 -9.0513 -4.4984 38 1 -3.3358 -5.0508 -4.0551 39 1 -5.6794 -4.5653 -4.6340 40 1 -7.4635 -6.1190 -3.9515 41 1 -6.9033 -8.1621 -2.6965 42 1 -4.5589 -8.6516 -2.1243 43 1 -1.2633 -3.4779 -2.2318 44 1 -0.1423 -1.4083 -1.5768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341853708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:41 Heat of formation + Delta-G solvation = -70.012131 kcal Electronic energy + Delta-G solvation = -26546.829621 eV Core-core repulsion = 22813.270764 eV Total energy + Delta-G solvation = -3733.558857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.37773 -40.04172 -38.97806 -37.86220 -36.34090 -35.67304 -33.23599 -31.85065 -31.54524 -31.27818 -31.25149 -27.88520 -26.41242 -23.98380 -23.53887 -22.98916 -22.82126 -21.65499 -21.06727 -19.36994 -18.84525 -18.38498 -17.64153 -17.38770 -17.03382 -16.29114 -16.06671 -15.74696 -15.68765 -15.45109 -15.20387 -14.98866 -14.84756 -14.44515 -14.27179 -14.12269 -13.92185 -13.68138 -13.61557 -13.24598 -13.22411 -12.85443 -12.67424 -12.55121 -12.38955 -12.30975 -11.91919 -11.80382 -11.72514 -11.37013 -11.12344 -10.92918 -10.68860 -10.13213 -9.83291 -9.69376 -9.57888 -9.41162 -8.79760 -6.48767 0.36002 0.44802 0.48705 1.14870 1.38559 1.44114 1.51773 2.11926 2.17672 2.33215 2.77505 2.85244 3.19408 3.67315 3.72992 3.88699 4.06987 4.12632 4.15781 4.26217 4.29568 4.29779 4.41054 4.44932 4.49419 4.62337 4.71604 4.74055 4.91615 4.95708 5.02538 5.03879 5.08406 5.14339 5.15842 5.29498 5.45245 5.54775 5.57993 5.61532 5.70177 5.82354 5.94013 5.99021 6.08531 6.22465 6.53495 6.66681 6.76801 6.77161 6.88534 7.42264 8.15204 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012895 B = 0.003129 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.919927 B = 8946.829206 C =10434.092252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.085 0.915 9 C 0.102 3.898 10 C -0.254 4.254 11 C -0.030 4.030 12 C -0.294 4.294 13 C 0.576 3.424 14 O -0.591 6.591 15 N -0.722 5.722 16 C 0.196 3.804 17 H 0.084 0.916 18 C -0.114 4.114 19 C 0.085 3.915 20 O -0.592 6.592 21 C -0.101 4.101 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.118 4.118 27 C -0.055 4.055 28 C -0.198 4.198 29 H 0.297 0.703 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.404 0.596 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.394 0.606 38 H 0.123 0.877 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.133 0.867 43 H 0.118 0.882 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.741 -7.410 -8.069 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.502 4.502 8 H 0.103 0.897 9 C 0.099 3.901 10 C -0.274 4.274 11 C -0.049 4.049 12 C -0.298 4.298 13 C 0.370 3.630 14 O -0.474 6.474 15 N -0.374 5.374 16 C 0.091 3.909 17 H 0.102 0.898 18 C -0.153 4.153 19 C 0.008 3.992 20 O -0.400 6.400 21 C -0.102 4.102 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.138 4.138 26 C -0.137 4.137 27 C -0.074 4.074 28 C -0.217 4.217 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.242 0.758 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.243 0.757 38 H 0.141 0.859 39 H 0.159 0.841 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.151 0.849 43 H 0.136 0.864 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.271 -7.880 -8.055 15.937 hybrid contribution 0.995 0.963 0.478 1.464 sum -10.276 -6.917 -7.577 14.521 Atomic orbital electron populations 1.69752 1.09223 1.31687 1.31430 1.26913 0.95535 1.04794 0.90811 0.85169 0.78874 0.75027 0.80281 1.18252 1.18766 1.18300 1.20102 0.98796 0.92287 1.39026 0.89663 1.18122 0.91202 0.92894 0.87861 1.20861 1.05239 0.92803 1.08470 1.20495 0.93356 0.97057 0.93989 1.19185 1.04408 0.92202 1.14028 1.18270 0.79343 0.88611 0.76767 1.90613 1.67158 1.31737 1.57941 1.45976 1.30561 1.09829 1.51057 1.19620 0.88194 0.86594 0.96445 0.89831 1.21859 0.94279 1.01589 0.97578 1.22199 0.93565 0.96627 0.86848 1.86329 1.32773 1.83391 1.37468 1.19807 0.93579 0.96674 1.00096 1.21123 0.97719 0.96786 0.98706 1.21430 0.92326 1.00409 0.99880 1.21547 1.00427 0.94303 0.97717 1.21453 0.96196 0.97986 0.98196 1.21226 0.92924 0.99605 0.99919 1.20708 0.97667 0.91750 0.97320 1.20997 1.00557 0.97355 1.02780 0.89173 0.87832 0.87669 0.75814 0.89398 0.91201 0.95039 0.93751 0.75713 0.85914 0.84060 0.83556 0.83536 0.84933 0.86378 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.95 10.95 21.87 0.24 -37.71 16 2 C 0.04 1.79 5.14 85.35 0.44 2.22 16 3 Si 0.99 34.59 29.60 68.60 2.03 36.62 16 4 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 6 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 7 C -0.47 -23.89 9.04 23.46 0.21 -23.67 16 8 H 0.09 4.10 7.91 -2.91 -0.02 4.08 16 9 C 0.10 5.29 5.58 -21.28 -0.12 5.17 16 10 C -0.25 -12.49 9.73 22.47 0.22 -12.27 16 11 C -0.03 -1.40 9.52 22.25 0.21 -1.19 16 12 C -0.29 -13.14 5.89 -19.93 -0.12 -13.26 16 13 C 0.58 23.18 6.32 86.73 0.55 23.73 16 14 O -0.59 -25.76 13.44 -4.00 -0.05 -25.82 16 15 N -0.72 -23.10 4.93 -449.15 -2.21 -25.32 16 16 C 0.20 5.40 2.46 44.25 0.11 5.51 16 17 H 0.08 2.51 7.44 -2.39 -0.02 2.49 16 18 C -0.11 -3.10 5.24 30.59 0.16 -2.94 16 19 C 0.09 2.63 5.64 71.98 0.41 3.04 16 20 O -0.59 -16.76 13.66 -148.98 -2.04 -18.80 16 21 C -0.10 -2.37 4.96 -19.86 -0.10 -2.47 16 22 C -0.13 -2.73 9.06 22.27 0.20 -2.52 16 23 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 24 C -0.12 -1.97 10.05 22.27 0.22 -1.74 16 25 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 26 C -0.12 -2.41 9.67 22.27 0.22 -2.19 16 27 C -0.06 -2.42 9.47 22.25 0.21 -2.21 16 28 C -0.20 -9.72 8.64 22.47 0.19 -9.53 16 29 H 0.30 12.59 8.29 -92.71 -0.77 11.82 16 30 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.11 4.75 7.63 -2.91 -0.02 4.73 16 32 H 0.40 11.80 4.86 -92.71 -0.45 11.35 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.03 1.14 5.63 -2.39 -0.01 1.13 16 36 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 37 H 0.39 7.97 9.12 -74.06 -0.68 7.29 16 38 H 0.12 2.56 6.90 -2.91 -0.02 2.54 16 39 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 40 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 42 H 0.13 2.35 8.04 -2.91 -0.02 2.33 16 43 H 0.12 4.27 6.37 -2.91 -0.02 4.25 16 44 H 0.11 5.62 6.16 -2.91 -0.02 5.60 16 Total: -1.00 -61.91 365.10 1.35 -60.56 By element: Atomic # 1 Polarization: 48.68 SS G_CDS: -0.08 Total: 48.59 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 3.46 Total: -38.13 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -1.98 Total: -63.03 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -2.09 Total: -44.61 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Total: -61.91 1.35 -60.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341853708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.450 kcal (2) G-P(sol) polarization free energy of solvation -61.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds