Wall clock time and date at job start Tue Mar 31 2020 14:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35681 * 116.99550 * 2 1 4 4 C 1.38883 * 119.67169 * 180.02562 * 3 2 1 5 5 C 1.38421 * 119.14356 * 179.97438 * 4 3 2 6 6 C 1.38771 * 118.49575 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.35806 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.46782 * 104.98343 * 7 6 5 9 9 C 1.46954 * 110.99736 * 293.79483 * 8 7 6 10 10 C 1.53048 * 109.36325 * 176.81223 * 9 8 7 11 11 N 1.46957 * 109.36200 * 58.40186 * 10 9 8 12 12 C 1.46905 * 111.00112 * 176.80849 * 11 10 9 13 13 C 1.50693 * 109.47272 * 293.80653 * 12 11 10 14 14 H 1.08000 * 120.00225 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99917 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00044 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00005 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47165 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47119 * 120.00422 * 17 15 13 20 20 H 1.48503 * 109.47254 * 239.99896 * 17 15 13 21 21 C 1.46949 * 110.88582 * 300.68061 * 11 10 9 22 22 C 1.46955 * 110.99709 * 170.00095 * 8 7 6 23 23 C 1.38216 * 119.27702 * 0.02562 * 6 5 4 24 24 Cl 1.73608 * 119.59584 * 180.27294 * 23 6 5 25 25 N 1.32054 * 120.80475 * 359.97438 * 23 6 5 26 26 H 1.08999 * 109.46683 * 300.00061 * 1 2 3 27 27 H 1.08998 * 109.47648 * 59.99756 * 1 2 3 28 28 H 1.09002 * 109.46891 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.43243 * 359.95639 * 4 3 2 30 30 H 1.07996 * 120.75467 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.47085 * 224.98074 * 7 6 5 32 32 H 1.09004 * 109.46885 * 344.98327 * 7 6 5 33 33 H 1.08994 * 109.49165 * 296.78314 * 9 8 7 34 34 H 1.09000 * 109.49008 * 56.84918 * 9 8 7 35 35 H 1.08997 * 109.49219 * 298.44034 * 10 9 8 36 36 H 1.08999 * 109.49369 * 178.37146 * 10 9 8 37 37 H 1.08999 * 109.46564 * 53.80566 * 12 11 10 38 38 H 1.09002 * 109.46971 * 173.79997 * 12 11 10 39 39 H 0.96999 * 119.99811 * 180.02562 * 16 15 13 40 40 H 1.09008 * 109.48710 * 299.35491 * 21 11 10 41 41 H 1.09000 * 109.49417 * 179.28653 * 21 11 10 42 42 H 1.08999 * 109.48706 * 303.15634 * 22 8 7 43 43 H 1.09002 * 109.49217 * 63.21869 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4322 1.2738 -0.0005 5 6 4.0492 2.5129 -0.0011 6 6 3.2525 3.6492 -0.0016 7 6 3.8800 5.0194 -0.0028 8 7 3.7578 5.6127 -1.3411 9 6 4.5557 4.8655 -2.3232 10 6 4.3393 5.4651 -3.7146 11 7 4.7226 6.8838 -3.6987 12 6 4.6005 7.4771 -5.0371 13 6 5.6108 6.8463 -5.9603 14 1 6.2773 6.0815 -5.5898 15 6 5.6844 7.2457 -7.2779 16 7 4.8724 8.1767 -7.7291 17 14 6.9372 6.4643 -8.4221 18 1 7.7255 5.4513 -7.6754 19 1 6.2332 5.8089 -9.5535 20 1 7.8493 7.5120 -8.9471 21 6 3.9248 7.6310 -2.7166 22 6 4.1412 7.0313 -1.3252 23 6 1.8773 3.5105 -0.0010 24 17 0.8727 4.9263 -0.0089 25 7 1.3183 2.3141 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 4.0221 0.3692 -0.0002 30 1 5.1261 2.5937 -0.0019 31 1 3.3706 5.6529 0.7234 32 1 4.9338 4.9366 0.2632 33 1 5.6112 4.9305 -2.0593 34 1 4.2447 3.8208 -2.3252 35 1 3.2884 5.3755 -3.9898 36 1 4.9524 4.9309 -4.4403 37 1 3.5963 7.3007 -5.4224 38 1 4.7833 8.5500 -4.9769 39 1 4.9239 8.4574 -8.6562 40 1 2.8691 7.5659 -2.9805 41 1 4.2358 8.6757 -2.7147 42 1 3.5280 7.5655 -0.5995 43 1 5.1920 7.1210 -1.0500 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237798061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:12 Heat of formation + Delta-G solvation = 9.759805 kcal Electronic energy + Delta-G solvation = -25371.776855 eV Core-core repulsion = 21671.537070 eV Total energy + Delta-G solvation = -3700.239785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.00211 -38.99663 -38.09574 -36.56028 -35.30761 -33.03814 -32.39979 -31.27455 -30.38143 -28.44799 -27.43302 -25.85487 -24.12021 -23.70260 -23.01886 -21.91870 -21.25191 -19.17362 -18.74984 -17.62572 -16.40095 -16.31297 -15.97391 -15.62700 -15.31298 -14.88736 -14.63688 -14.34661 -14.14535 -14.01746 -13.94745 -13.65775 -13.39439 -13.16248 -12.39826 -12.18453 -12.13212 -11.98266 -11.93645 -11.65113 -11.24812 -11.09469 -11.04827 -10.84280 -10.72952 -10.60669 -10.39583 -10.28194 -10.05139 -10.03583 -9.71498 -9.15402 -8.61700 -8.43041 -8.12968 -7.20643 -6.01654 -4.02931 0.72042 0.90273 1.70729 2.78914 3.31182 3.31748 3.38565 3.43029 4.09201 4.20068 4.43186 4.50158 4.62282 4.80568 4.96324 4.97578 5.03295 5.05413 5.19928 5.31861 5.34279 5.38000 5.46984 5.56484 5.60118 5.76417 5.84601 5.89797 5.91991 5.98493 6.07711 6.21689 6.46200 6.61434 6.70992 6.83840 7.18804 7.19624 7.36901 7.37386 7.40018 7.81541 8.10858 8.22633 8.57083 9.04927 9.61287 11.09296 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.015787 B = 0.003027 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.166799 B = 9246.610139 C =10010.087730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.305 6.305 3 C 0.335 3.665 4 C -0.188 4.188 5 C -0.025 4.025 6 C -0.146 4.146 7 C 0.101 3.899 8 N -0.530 5.530 9 C 0.059 3.941 10 C 0.069 3.931 11 N -0.538 5.538 12 C 0.194 3.806 13 C -0.506 4.506 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.057 3.943 22 C 0.064 3.936 23 C 0.236 3.764 24 Cl -0.012 7.012 25 N -0.539 5.539 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.066 0.934 35 H 0.028 0.972 36 H 0.085 0.915 37 H -0.009 1.009 38 H 0.029 0.971 39 H 0.260 0.740 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 -12.549 20.166 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.212 6.212 3 C 0.156 3.844 4 C -0.208 4.208 5 C -0.050 4.050 6 C -0.150 4.150 7 C -0.027 4.027 8 N -0.255 5.255 9 C -0.069 4.069 10 C -0.060 4.060 11 N -0.264 5.264 12 C 0.069 3.931 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.072 4.072 22 C -0.064 4.064 23 C 0.073 3.927 24 Cl 0.017 6.983 25 N -0.265 5.265 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.103 0.897 37 H 0.009 0.991 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.744 -12.651 19.989 24.599 hybrid contribution 0.985 -0.094 -0.826 1.289 sum -5.759 -12.745 19.164 23.725 Atomic orbital electron populations 1.22899 0.76901 1.03066 1.02766 1.86255 1.23200 1.23991 1.87751 1.19574 0.89134 0.83750 0.91963 1.21099 0.91798 0.99749 1.08193 1.21367 1.00713 0.90147 0.92814 1.20338 0.91967 0.97200 1.05483 1.20876 0.98532 0.90816 0.92522 1.62180 1.56023 1.02788 1.04494 1.22249 0.95066 0.96809 0.92771 1.21956 0.98842 0.90697 0.94465 1.62288 1.53121 1.01389 1.09554 1.19695 0.95724 0.95179 0.82541 1.21188 1.17993 1.21418 0.93838 0.91907 1.24995 0.96167 0.95284 0.98218 1.69972 1.37969 1.30111 1.15751 0.86462 0.81240 0.79185 0.80649 1.19682 1.21125 1.21040 1.22052 0.96119 0.97639 0.91395 1.22142 0.98753 0.87489 0.97992 1.21044 0.88389 0.87338 0.95956 1.98426 1.69732 1.34273 1.95913 1.66548 1.41493 0.97865 1.20598 0.92197 0.92002 0.88482 0.83422 0.83194 0.89473 0.93461 0.94257 0.91586 0.95412 0.89694 0.99101 0.95256 0.93000 0.95101 0.91026 0.91096 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.27 10.48 -18.74 -0.20 -3.46 16 3 C 0.34 3.90 7.49 -17.13 -0.13 3.77 16 4 C -0.19 -1.82 10.04 -39.28 -0.39 -2.21 16 5 C -0.02 -0.23 9.18 -39.32 -0.36 -0.59 16 6 C -0.15 -1.65 4.44 -104.43 -0.46 -2.11 16 7 C 0.10 1.12 4.44 -4.97 -0.02 1.10 16 8 N -0.53 -7.45 4.59 -235.91 -1.08 -8.53 16 9 C 0.06 0.91 5.42 -3.77 -0.02 0.89 16 10 C 0.07 1.36 5.43 -3.77 -0.02 1.34 16 11 N -0.54 -11.64 4.70 -235.91 -1.11 -12.74 16 12 C 0.19 5.09 4.72 -4.98 -0.02 5.06 16 13 C -0.51 -14.21 8.47 -34.44 -0.29 -14.50 16 14 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 17 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.06 1.03 5.61 -3.77 -0.02 1.01 16 22 C 0.06 0.92 5.61 -3.77 -0.02 0.90 16 23 C 0.24 3.01 7.27 -17.46 -0.13 2.88 16 24 Cl -0.01 -0.15 27.69 -51.86 -1.44 -1.59 16 25 N -0.54 -6.96 9.19 -10.44 -0.10 -7.05 16 26 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 30 H 0.15 1.04 8.04 -52.49 -0.42 0.62 16 31 H 0.09 0.90 7.48 -51.93 -0.39 0.51 16 32 H 0.05 0.47 7.97 -51.93 -0.41 0.06 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.96 6.72 -51.93 -0.35 0.61 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.80 6.79 -51.93 -0.35 1.44 16 37 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 38 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 42 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -31.46 364.46 -10.15 -41.60 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -6.49 Total: -4.59 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.94 Total: 0.37 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -1.55 Total: -54.46 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.20 Total: -3.46 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.44 Total: -1.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.46 -10.15 -41.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237798061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.365 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds