Wall clock time and date at job start Tue Mar 31 2020 15:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00030 * 2 1 4 4 H 1.48502 * 109.47048 * 269.99952 * 3 2 1 5 5 H 1.48500 * 109.47208 * 29.99969 * 3 2 1 6 6 H 1.48502 * 109.47219 * 150.00131 * 3 2 1 7 7 C 1.37876 * 120.00042 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00249 * 186.38767 * 7 2 1 9 9 C 1.50709 * 120.00091 * 6.38830 * 7 2 1 10 10 H 1.08998 * 109.46622 * 333.92634 * 9 7 2 11 11 C 1.50703 * 109.46973 * 213.92818 * 9 7 2 12 12 O 1.21280 * 119.99590 * 239.99928 * 11 9 7 13 13 N 1.34771 * 119.99914 * 59.99895 * 11 9 7 14 14 C 1.46506 * 119.99941 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.47129 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47120 * 179.97438 * 15 14 13 17 17 C 1.38286 * 119.97399 * 269.97859 * 16 15 14 18 18 C 1.38238 * 120.11127 * 180.02562 * 17 16 15 19 19 C 1.38175 * 120.05631 * 359.68131 * 18 17 16 20 20 C 1.38711 * 119.94149 * 0.61556 * 19 18 17 21 21 O 1.35895 * 120.05601 * 179.67935 * 20 19 18 22 22 C 1.38123 * 119.96830 * 90.00115 * 16 15 14 23 23 C 1.50696 * 109.46900 * 93.92850 * 9 7 2 24 24 C 1.38230 * 120.00356 * 53.85010 * 23 9 7 25 25 C 1.38240 * 120.00301 * 179.80792 * 24 23 9 26 26 C 1.38230 * 119.99673 * 0.39660 * 25 24 23 27 27 C 1.38240 * 120.00149 * 359.85530 * 26 25 24 28 28 C 1.38231 * 120.00103 * 359.95567 * 27 26 25 29 29 H 0.96997 * 120.00302 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00222 * 359.97438 * 13 11 9 31 31 H 1.08992 * 109.46607 * 60.00384 * 14 13 11 32 32 H 1.08998 * 109.47075 * 300.00327 * 14 13 11 33 33 H 1.09003 * 109.46872 * 60.00187 * 15 14 13 34 34 H 1.08998 * 109.47261 * 300.00032 * 15 14 13 35 35 H 1.08000 * 119.94576 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.97580 * 179.97438 * 18 17 16 37 37 H 1.07996 * 120.02716 * 180.29945 * 19 18 17 38 38 H 0.96705 * 113.99901 * 269.72608 * 21 20 19 39 39 H 1.08003 * 120.02963 * 0.02562 * 22 16 15 40 40 H 1.08004 * 119.99758 * 359.97438 * 24 23 9 41 41 H 1.07998 * 119.99986 * 180.22880 * 25 24 23 42 42 H 1.07997 * 120.00049 * 179.83744 * 26 25 24 43 43 H 1.08000 * 120.00034 * 179.97438 * 27 26 25 44 44 H 1.07996 * 120.00095 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0795 -1.1970 0.1035 9 6 1.2580 -2.4951 -0.1463 10 1 0.2376 -2.3710 0.2162 11 6 1.9506 -3.5645 0.6585 12 8 2.3791 -4.5563 0.1074 13 7 2.0939 -3.4188 1.9906 14 6 2.7667 -4.4587 2.7731 15 6 2.7949 -4.0497 4.2472 16 6 3.4864 -5.1197 5.0522 17 6 2.7529 -6.1592 5.5941 18 6 3.3842 -7.1419 6.3335 19 6 4.7514 -7.0913 6.5273 20 6 5.4885 -6.0463 5.9900 21 8 6.8323 -5.9907 6.1846 22 6 4.8524 -5.0610 5.2485 23 6 1.2299 -2.8981 -1.5981 24 6 2.4094 -2.9904 -2.3129 25 6 2.3839 -3.3639 -3.6436 26 6 1.1781 -3.6371 -4.2618 27 6 -0.0020 -3.5397 -3.5484 28 6 0.0238 -3.1700 -2.2167 29 1 -0.4850 0.8400 0.0004 30 1 1.7515 -2.6254 2.4313 31 1 3.7870 -4.5830 2.4106 32 1 2.2264 -5.3995 2.6677 33 1 1.7743 -3.9257 4.6094 34 1 3.3349 -3.1089 4.3530 35 1 1.6848 -6.2029 5.4401 36 1 2.8091 -7.9525 6.7560 37 1 5.2448 -7.8618 7.1009 38 1 7.0951 -5.5023 6.9769 39 1 5.4247 -4.2485 4.8258 40 1 3.3513 -2.7734 -1.8309 41 1 3.3059 -3.4396 -4.2010 42 1 1.1579 -3.9263 -5.3021 43 1 -0.9442 -3.7527 -4.0315 44 1 -0.8981 -3.0935 -1.6595 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362474921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:19 Heat of formation + Delta-G solvation = -45.766998 kcal Electronic energy + Delta-G solvation = -26051.420961 eV Core-core repulsion = 22318.913451 eV Total energy + Delta-G solvation = -3732.507509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.98406 -39.10328 -37.78815 -37.11733 -34.78854 -33.64186 -32.22946 -31.07977 -30.07258 -29.93055 -28.54805 -27.06896 -24.20776 -23.21068 -22.74806 -21.59207 -21.24328 -20.74136 -19.28469 -18.13013 -16.77390 -16.56084 -16.12028 -16.07122 -15.82172 -15.38931 -15.17634 -14.61681 -14.49780 -14.16552 -13.89319 -13.83148 -13.17805 -13.04220 -12.96005 -12.53777 -12.45670 -12.27188 -12.12051 -11.80015 -11.64038 -11.59503 -11.50608 -11.08999 -11.06368 -10.96234 -10.65285 -10.39825 -10.26821 -9.98825 -9.44241 -9.02420 -8.80348 -8.75761 -8.56243 -8.31291 -7.94034 -7.60880 -6.29024 -4.33967 1.06233 1.14792 2.38051 2.41065 3.19467 3.27135 3.28567 3.42488 3.74361 3.92002 4.11098 4.28183 4.69600 4.72442 4.85318 4.97340 5.08950 5.11846 5.18315 5.22242 5.37709 5.58544 5.69484 5.72791 5.79753 5.84974 5.90145 6.04320 6.09545 6.21638 6.22977 6.23519 6.40634 6.46437 6.51088 6.60722 6.63848 6.87866 6.98217 7.17010 7.24920 7.37513 7.44175 7.45346 7.62212 7.76153 7.96201 8.07893 8.40397 8.70629 9.26019 9.32750 10.79671 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012207 B = 0.002964 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.295660 B = 9445.213633 C =10631.220786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.075 3.925 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.048 3.952 10 H 0.092 0.908 11 C 0.527 3.473 12 O -0.568 6.568 13 N -0.731 5.731 14 C 0.129 3.871 15 C -0.095 4.095 16 C -0.056 4.056 17 C -0.123 4.123 18 C -0.103 4.103 19 C -0.152 4.152 20 C 0.103 3.897 21 O -0.500 6.500 22 C -0.139 4.139 23 C -0.012 4.012 24 C -0.085 4.085 25 C -0.134 4.134 26 C -0.149 4.149 27 C -0.132 4.132 28 C -0.120 4.120 29 H 0.267 0.733 30 H 0.406 0.594 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.389 0.611 39 H 0.130 0.870 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -8.054 11.694 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.129 4.129 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.027 3.973 10 H 0.110 0.890 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.384 5.384 14 C 0.004 3.996 15 C -0.132 4.132 16 C -0.057 4.057 17 C -0.141 4.141 18 C -0.121 4.121 19 C -0.170 4.170 20 C 0.059 3.941 21 O -0.310 6.310 22 C -0.158 4.158 23 C -0.013 4.013 24 C -0.103 4.103 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.150 4.150 28 C -0.139 4.139 29 H 0.077 0.923 30 H 0.241 0.759 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.244 0.756 39 H 0.148 0.852 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.451 -8.967 10.786 14.716 hybrid contribution 0.354 1.620 0.561 1.750 sum 4.805 -7.347 11.347 14.346 Atomic orbital electron populations 1.69878 1.06012 1.27453 1.48212 1.24948 0.94878 0.99423 0.93685 0.86510 0.79849 0.82715 0.78544 1.20317 1.21048 1.19642 1.20686 0.93472 0.88664 1.52388 0.91969 1.18136 0.99790 0.91780 0.87549 0.89021 1.21617 0.78017 0.87119 0.81572 1.90586 1.50969 1.32223 1.70907 1.45917 1.60988 1.23252 1.08245 1.21099 0.98016 0.91849 0.88624 1.20849 1.01316 0.97019 0.94041 1.19663 0.93058 0.96048 0.96951 1.21145 1.00386 0.94330 0.98229 1.21021 0.93994 0.98661 0.98440 1.21395 0.94328 0.99343 1.01984 1.18461 0.82768 0.94688 0.98164 1.84841 1.18739 1.77990 1.49424 1.21388 0.94318 0.99426 1.00627 1.20064 0.92103 0.91914 0.97199 1.20835 0.98348 0.97860 0.93243 1.20963 0.97058 1.01821 0.95418 1.20800 0.93056 1.03962 0.98882 1.20903 0.97228 1.02027 0.94864 1.21002 0.97816 1.00345 0.94697 0.92319 0.75927 0.92164 0.92196 0.89955 0.89944 0.85525 0.85602 0.85663 0.75578 0.85220 0.87098 0.87575 0.87701 0.87542 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.93 12.78 55.43 0.71 -22.22 16 2 C 0.08 1.89 5.45 -17.82 -0.10 1.80 16 3 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.51 -12.78 7.46 -34.44 -0.26 -13.04 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.05 1.15 2.44 -94.07 -0.23 0.92 16 10 H 0.09 2.29 7.00 -51.93 -0.36 1.93 16 11 C 0.53 11.78 7.04 -10.99 -0.08 11.70 16 12 O -0.57 -14.05 15.42 5.56 0.09 -13.97 16 13 N -0.73 -13.30 5.46 -60.29 -0.33 -13.63 16 14 C 0.13 1.97 5.66 -4.04 -0.02 1.95 16 15 C -0.09 -1.10 5.46 -27.88 -0.15 -1.25 16 16 C -0.06 -0.64 5.13 -104.65 -0.54 -1.18 16 17 C -0.12 -1.26 9.70 -39.56 -0.38 -1.65 16 18 C -0.10 -0.97 10.04 -39.60 -0.40 -1.36 16 19 C -0.15 -1.49 9.99 -39.43 -0.39 -1.88 16 20 C 0.10 1.12 6.70 -39.22 -0.26 0.86 16 21 O -0.50 -4.90 13.50 -19.41 -0.26 -5.16 16 22 C -0.14 -1.59 9.64 -39.43 -0.38 -1.97 16 23 C -0.01 -0.28 4.30 -104.63 -0.45 -0.73 16 24 C -0.08 -1.93 8.31 -39.58 -0.33 -2.26 16 25 C -0.13 -2.70 10.05 -39.58 -0.40 -3.09 16 26 C -0.15 -2.81 10.05 -39.58 -0.40 -3.20 16 27 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 28 C -0.12 -2.65 9.67 -39.58 -0.38 -3.03 16 29 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.41 6.93 8.36 -40.82 -0.34 6.59 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 34 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.39 1.82 9.06 45.56 0.41 2.23 16 39 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.11 2.56 7.89 -52.48 -0.41 2.14 16 41 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.11 2.37 7.95 -52.49 -0.42 1.95 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -31.04 380.42 -9.95 -40.99 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -5.31 Total: 13.84 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -5.55 Total: -20.39 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.38 Total: -35.86 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.18 Total: -19.13 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.04 -9.95 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362474921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.778 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds