Wall clock time and date at job start Tue Mar 31 2020 14:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35629 * 125.67761 * 2 1 4 4 C 1.35522 * 108.85597 * 179.88934 * 3 2 1 5 5 Cl 1.73595 * 126.07856 * 180.12486 * 4 3 2 6 6 C 1.39895 * 107.84743 * 0.37399 * 4 3 2 7 7 C 1.37641 * 125.67820 * 180.30980 * 2 1 3 8 8 C 1.46667 * 126.21742 * 359.94359 * 7 2 1 9 9 O 1.21702 * 119.99729 * 171.75337 * 8 7 2 10 10 N 1.34771 * 120.00637 * 351.75379 * 8 7 2 11 11 C 1.46504 * 120.00491 * 186.41245 * 10 8 7 12 12 C 1.52995 * 109.47211 * 175.92273 * 11 10 8 13 13 N 1.46500 * 110.02207 * 296.66310 * 12 11 10 14 14 C 1.36938 * 119.99871 * 294.58633 * 13 12 11 15 15 H 1.08000 * 120.00059 * 4.50162 * 14 13 12 16 16 C 1.38804 * 120.00103 * 184.50520 * 14 13 12 17 17 N 1.31627 * 120.00084 * 5.80216 * 16 14 13 18 18 Si 1.86802 * 120.00228 * 185.80215 * 16 14 13 19 19 H 1.48504 * 109.46874 * 5.02009 * 18 16 14 20 20 H 1.48498 * 109.46998 * 125.01819 * 18 16 14 21 21 H 1.48497 * 109.47287 * 245.01557 * 18 16 14 22 22 C 1.54266 * 110.03273 * 175.21531 * 12 11 10 23 23 C 1.54890 * 104.19912 * 217.10681 * 22 12 11 24 24 C 1.54885 * 102.74479 * 37.94737 * 23 22 12 25 25 C 1.53881 * 110.03124 * 58.05521 * 12 11 10 26 26 H 1.08996 * 109.47019 * 260.89014 * 1 2 3 27 27 H 1.08999 * 109.46854 * 20.88841 * 1 2 3 28 28 H 1.08995 * 109.47269 * 140.88340 * 1 2 3 29 29 H 1.08001 * 125.57353 * 0.04083 * 3 2 1 30 30 H 1.07993 * 126.45518 * 179.73564 * 6 4 3 31 31 H 0.97003 * 119.99817 * 6.41244 * 10 8 7 32 32 H 1.09000 * 109.46863 * 295.92716 * 11 10 8 33 33 H 1.08997 * 109.46729 * 55.92364 * 11 10 8 34 34 H 0.97004 * 119.99895 * 114.57913 * 13 12 11 35 35 H 0.96999 * 119.99943 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.48492 * 335.79298 * 22 12 11 37 37 H 1.09005 * 110.48190 * 98.42894 * 22 12 11 38 38 H 1.09000 * 110.75454 * 279.63070 * 23 22 12 39 39 H 1.09000 * 110.75400 * 156.25755 * 23 22 12 40 40 H 1.09004 * 110.48249 * 203.38150 * 24 23 22 41 41 H 1.08998 * 110.49324 * 80.73434 * 24 23 22 42 42 H 1.09007 * 110.02997 * 238.56798 * 25 12 11 43 43 H 1.09000 * 110.03513 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5532 0.7095 0.0025 5 17 4.9378 1.7567 0.0065 6 6 3.5783 -0.6892 -0.0046 7 6 2.2678 -1.1180 -0.0060 8 6 1.8120 -2.5121 -0.0124 9 8 2.6143 -3.4138 -0.1686 10 7 0.5049 -2.7946 0.1547 11 6 0.0675 -4.1863 0.2891 12 6 -1.4365 -4.2237 0.5673 13 7 -1.7262 -3.5720 1.8470 14 6 -1.2636 -4.1190 3.0141 15 1 -0.6247 -4.9893 2.9865 16 6 -1.6158 -3.5550 4.2324 17 7 -2.4841 -2.5666 4.2736 18 14 -0.8576 -4.1985 5.8137 19 1 0.1704 -5.2201 5.4898 20 1 -0.2245 -3.0761 6.5517 21 1 -1.9157 -4.8108 6.6567 22 6 -1.9332 -5.6840 0.5923 23 6 -3.3336 -5.6203 -0.0665 24 6 -3.1342 -4.5759 -1.1927 25 6 -2.2002 -3.5191 -0.5677 26 1 -0.3633 -0.1627 1.0147 27 1 -0.3633 0.9601 -0.3664 28 1 -0.3633 -0.7973 -0.6483 29 1 1.9089 2.1244 0.0006 30 1 4.4583 -1.3152 -0.0088 31 1 -0.1464 -2.0764 0.1859 32 1 0.2796 -4.7247 -0.6347 33 1 0.6015 -4.6568 1.1146 34 1 -2.2456 -2.7530 1.8676 35 1 -2.7305 -2.1727 5.1251 36 1 -1.2675 -6.3233 0.0125 37 1 -2.0104 -6.0431 1.6186 38 1 -4.0818 -5.2790 0.6489 39 1 -3.6091 -6.5893 -0.4827 40 1 -4.0879 -4.1262 -1.4692 41 1 -2.6625 -5.0362 -2.0609 42 1 -2.7869 -2.6928 -0.1662 43 1 -1.4993 -3.1502 -1.3166 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753665798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:47 Heat of formation + Delta-G solvation = 18.957328 kcal Electronic energy + Delta-G solvation = -26151.459797 eV Core-core repulsion = 22451.618846 eV Total energy + Delta-G solvation = -3699.840951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51882 -39.25331 -38.02137 -36.43874 -34.46513 -33.55678 -32.62610 -30.82167 -29.53913 -28.37144 -27.67089 -26.73475 -24.74582 -23.43086 -22.07853 -20.69715 -20.44426 -19.76092 -18.64033 -17.74782 -17.05698 -16.04787 -15.77986 -15.68496 -15.24463 -14.75114 -14.49680 -14.33225 -14.05524 -13.92139 -13.43260 -13.25089 -13.05458 -12.97710 -12.81293 -12.70652 -12.27101 -12.00284 -11.57015 -11.47430 -11.08418 -10.88789 -10.84740 -10.82529 -10.69780 -10.56977 -10.31685 -10.19118 -9.94501 -9.84541 -9.71668 -9.00913 -8.78657 -8.61678 -8.21693 -7.10319 -5.89136 -3.17735 1.46261 2.06133 2.45227 2.85885 3.37186 3.43056 3.45607 3.46737 3.64468 4.50091 4.51110 4.66984 4.84877 4.98919 5.02627 5.07774 5.13903 5.24694 5.34821 5.48036 5.57487 5.65889 5.73771 5.85853 5.87400 5.88687 5.98731 6.09232 6.16212 6.21703 6.34615 6.44414 6.46388 6.50838 6.69536 6.70026 6.76708 6.85360 6.92930 7.00588 7.64390 7.81696 8.29340 8.46139 9.41120 9.93763 10.29070 11.32717 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.004063 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.079316 B = 6890.348161 C = 8197.261289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.419 5.419 3 C 0.032 3.968 4 C -0.126 4.126 5 Cl -0.055 7.055 6 C -0.104 4.104 7 C -0.030 4.030 8 C 0.583 3.417 9 O -0.537 6.537 10 N -0.709 5.709 11 C 0.113 3.887 12 C 0.188 3.812 13 N -0.711 5.711 14 C -0.235 4.235 15 H 0.072 0.928 16 C -0.007 4.007 17 N -0.931 5.931 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.129 4.129 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.129 4.129 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.176 0.824 30 H 0.155 0.845 31 H 0.396 0.604 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.382 0.618 35 H 0.254 0.746 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 6.297 -12.564 14.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.094 5.094 3 C -0.105 4.105 4 C -0.159 4.159 5 Cl -0.026 7.026 6 C -0.131 4.131 7 C -0.143 4.143 8 C 0.370 3.630 9 O -0.415 6.415 10 N -0.363 5.363 11 C -0.013 4.013 12 C 0.096 3.904 13 N -0.352 5.352 14 C -0.366 4.366 15 H 0.090 0.910 16 C -0.203 4.203 17 N -0.579 5.579 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.169 4.169 23 C -0.154 4.154 24 C -0.157 4.157 25 C -0.167 4.167 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.194 0.806 30 H 0.173 0.827 31 H 0.236 0.764 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.216 0.784 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.158 5.573 -12.490 14.037 hybrid contribution 0.002 0.520 1.166 1.277 sum 3.160 6.093 -11.324 13.242 Atomic orbital electron populations 1.22491 0.75883 1.05075 1.05378 1.43962 1.06667 1.05328 1.53462 1.21641 0.88917 0.92116 1.07807 1.19860 0.87830 0.91270 1.16919 1.98309 1.40967 1.65589 1.97755 1.21090 0.95518 0.92495 1.03965 1.20601 0.90278 0.86974 1.16443 1.16943 0.82830 0.85982 0.77281 1.90814 1.54021 1.46065 1.50561 1.46234 1.07049 1.10564 1.72472 1.22096 0.97805 0.80937 1.00428 1.20449 0.90170 0.92734 0.87060 1.42538 1.64395 1.28513 0.99760 1.19139 1.23329 1.10063 0.84069 0.91034 1.24671 0.99245 0.98957 0.97472 1.69673 1.35507 1.27826 1.24885 0.86221 0.78571 0.78021 0.84030 1.20450 1.21880 1.21894 1.22763 0.95426 0.96860 1.01854 1.22383 0.98206 0.97703 0.97116 1.22286 0.98732 0.96770 0.97915 1.22469 0.98162 0.98737 0.97313 0.88335 0.88241 0.89278 0.80634 0.82698 0.76444 0.92682 0.90983 0.78387 0.93607 0.92844 0.89858 0.91241 0.92633 0.92292 0.92212 0.91347 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.52 9.48 59.85 0.57 1.08 16 2 N -0.42 -5.27 3.16 -120.19 -0.38 -5.65 16 3 C 0.03 0.36 11.34 -16.84 -0.19 0.17 16 4 C -0.13 -1.65 6.66 -39.93 -0.27 -1.91 16 5 Cl -0.05 -0.64 29.30 -51.86 -1.52 -2.16 16 6 C -0.10 -1.57 10.66 -39.09 -0.42 -1.99 16 7 C -0.03 -0.47 6.88 -81.98 -0.56 -1.04 16 8 C 0.58 10.49 7.76 -12.86 -0.10 10.39 16 9 O -0.54 -11.24 16.91 5.19 0.09 -11.16 16 10 N -0.71 -11.78 4.83 -61.62 -0.30 -12.08 16 11 C 0.11 2.00 4.32 -4.04 -0.02 1.99 16 12 C 0.19 3.23 0.69 -130.70 -0.09 3.14 16 13 N -0.71 -15.21 5.05 -46.20 -0.23 -15.44 16 14 C -0.24 -5.89 8.25 -15.06 -0.12 -6.02 16 15 H 0.07 1.82 7.18 -52.49 -0.38 1.44 16 16 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 17 N -0.93 -25.94 13.08 55.49 0.73 -25.22 16 18 Si 0.90 21.77 29.56 -169.99 -5.02 16.75 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 C -0.13 -2.15 5.91 -25.07 -0.15 -2.30 16 23 C -0.12 -1.69 6.91 -24.74 -0.17 -1.86 16 24 C -0.12 -1.52 6.83 -25.08 -0.17 -1.69 16 25 C -0.13 -1.80 5.55 -25.61 -0.14 -1.94 16 26 H 0.10 1.10 8.05 -51.93 -0.42 0.69 16 27 H 0.10 0.63 8.11 -51.93 -0.42 0.21 16 28 H 0.09 0.84 6.17 -51.93 -0.32 0.52 16 29 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.16 2.28 8.06 -52.49 -0.42 1.86 16 31 H 0.40 5.83 3.53 -40.82 -0.14 5.69 16 32 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.07 1.49 7.45 -51.93 -0.39 1.10 16 34 H 0.38 8.65 7.32 -40.82 -0.30 8.35 16 35 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.05 0.81 7.81 -51.93 -0.41 0.40 16 37 H 0.08 1.61 6.80 -51.93 -0.35 1.26 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.97 7.46 -51.92 -0.39 0.58 16 43 H 0.06 0.74 7.24 -51.93 -0.38 0.36 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -30.36 362.16 -9.09 -39.45 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.98 Total: 12.31 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.93 Total: -2.27 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.19 Total: -58.38 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.52 Total: -2.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.36 -9.09 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753665798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.411 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds