Wall clock time and date at job start Tue Mar 31 2020 14:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35629 * 125.67761 * 2 1 4 4 C 1.35522 * 108.85597 * 179.88934 * 3 2 1 5 5 Cl 1.73595 * 126.07856 * 180.12486 * 4 3 2 6 6 C 1.39895 * 107.84743 * 0.37399 * 4 3 2 7 7 C 1.37641 * 125.67820 * 180.30980 * 2 1 3 8 8 C 1.46667 * 126.21742 * 359.94359 * 7 2 1 9 9 O 1.21702 * 119.99729 * 171.75337 * 8 7 2 10 10 N 1.34771 * 120.00637 * 351.75379 * 8 7 2 11 11 C 1.46504 * 120.00491 * 186.41245 * 10 8 7 12 12 C 1.52995 * 109.47211 * 175.92273 * 11 10 8 13 13 N 1.46500 * 110.02207 * 296.66310 * 12 11 10 14 14 C 1.36938 * 119.99871 * 294.58633 * 13 12 11 15 15 H 1.08000 * 120.00059 * 4.50162 * 14 13 12 16 16 C 1.38804 * 120.00103 * 184.50520 * 14 13 12 17 17 N 1.31627 * 120.00084 * 5.80216 * 16 14 13 18 18 Si 1.86802 * 120.00228 * 185.80215 * 16 14 13 19 19 H 1.48504 * 109.46874 * 5.02009 * 18 16 14 20 20 H 1.48498 * 109.46998 * 125.01819 * 18 16 14 21 21 H 1.48497 * 109.47287 * 245.01557 * 18 16 14 22 22 C 1.54266 * 110.03273 * 175.21531 * 12 11 10 23 23 C 1.54890 * 104.19912 * 217.10681 * 22 12 11 24 24 C 1.54885 * 102.74479 * 37.94737 * 23 22 12 25 25 C 1.53881 * 110.03124 * 58.05521 * 12 11 10 26 26 H 1.08996 * 109.47019 * 260.89014 * 1 2 3 27 27 H 1.08999 * 109.46854 * 20.88841 * 1 2 3 28 28 H 1.08995 * 109.47269 * 140.88340 * 1 2 3 29 29 H 1.08001 * 125.57353 * 0.04083 * 3 2 1 30 30 H 1.07993 * 126.45518 * 179.73564 * 6 4 3 31 31 H 0.97003 * 119.99817 * 6.41244 * 10 8 7 32 32 H 1.09000 * 109.46863 * 295.92716 * 11 10 8 33 33 H 1.08997 * 109.46729 * 55.92364 * 11 10 8 34 34 H 0.97004 * 119.99895 * 114.57913 * 13 12 11 35 35 H 0.96999 * 119.99943 * 179.97438 * 17 16 14 36 36 H 1.08998 * 110.48492 * 335.79298 * 22 12 11 37 37 H 1.09005 * 110.48190 * 98.42894 * 22 12 11 38 38 H 1.09000 * 110.75454 * 279.63070 * 23 22 12 39 39 H 1.09000 * 110.75400 * 156.25755 * 23 22 12 40 40 H 1.09004 * 110.48249 * 203.38150 * 24 23 22 41 41 H 1.08998 * 110.49324 * 80.73434 * 24 23 22 42 42 H 1.09007 * 110.02997 * 238.56798 * 25 12 11 43 43 H 1.09000 * 110.03513 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2560 1.1017 0.0000 4 6 3.5532 0.7095 0.0025 5 17 4.9378 1.7567 0.0065 6 6 3.5783 -0.6892 -0.0046 7 6 2.2678 -1.1180 -0.0060 8 6 1.8120 -2.5121 -0.0124 9 8 2.6143 -3.4138 -0.1686 10 7 0.5049 -2.7946 0.1547 11 6 0.0675 -4.1863 0.2891 12 6 -1.4365 -4.2237 0.5673 13 7 -1.7262 -3.5720 1.8470 14 6 -1.2636 -4.1190 3.0141 15 1 -0.6247 -4.9893 2.9865 16 6 -1.6158 -3.5550 4.2324 17 7 -2.4841 -2.5666 4.2736 18 14 -0.8576 -4.1985 5.8137 19 1 0.1704 -5.2201 5.4898 20 1 -0.2245 -3.0761 6.5517 21 1 -1.9157 -4.8108 6.6567 22 6 -1.9332 -5.6840 0.5923 23 6 -3.3336 -5.6203 -0.0665 24 6 -3.1342 -4.5759 -1.1927 25 6 -2.2002 -3.5191 -0.5677 26 1 -0.3633 -0.1627 1.0147 27 1 -0.3633 0.9601 -0.3664 28 1 -0.3633 -0.7973 -0.6483 29 1 1.9089 2.1244 0.0006 30 1 4.4583 -1.3152 -0.0088 31 1 -0.1464 -2.0764 0.1859 32 1 0.2796 -4.7247 -0.6347 33 1 0.6015 -4.6568 1.1146 34 1 -2.2456 -2.7530 1.8676 35 1 -2.7305 -2.1727 5.1251 36 1 -1.2675 -6.3233 0.0125 37 1 -2.0104 -6.0431 1.6186 38 1 -4.0818 -5.2790 0.6489 39 1 -3.6091 -6.5893 -0.4827 40 1 -4.0879 -4.1262 -1.4692 41 1 -2.6625 -5.0362 -2.0609 42 1 -2.7869 -2.6928 -0.1662 43 1 -1.4993 -3.1502 -1.3166 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753665798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:47 Heat of formation + Delta-G solvation = 0.665138 kcal Electronic energy + Delta-G solvation = -26152.253006 eV Core-core repulsion = 22451.618846 eV Total energy + Delta-G solvation = -3700.634159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.58661 -40.61849 -39.40722 -37.39454 -35.78121 -35.32250 -33.69359 -32.48593 -30.81298 -29.59954 -29.10861 -27.63794 -26.29328 -25.07592 -23.33063 -21.71919 -21.66639 -20.98940 -20.03442 -19.00109 -18.82899 -17.36729 -17.09547 -16.80875 -16.60400 -16.16866 -15.76795 -15.65705 -15.41149 -15.23070 -14.95590 -14.47871 -14.23955 -14.10089 -13.91942 -13.86684 -13.57426 -13.33159 -13.04694 -12.89240 -12.52359 -12.43340 -12.34638 -12.14375 -11.91277 -11.81074 -11.71330 -11.60069 -11.45639 -11.35890 -11.25417 -10.89820 -10.16872 -9.73637 -9.26904 -8.97587 -7.94245 -5.18337 0.30582 1.10886 1.41058 1.41875 1.45689 1.51451 1.83095 2.13234 2.34675 2.54509 3.36517 3.58992 3.74070 3.76060 3.82516 3.92183 3.99245 4.11385 4.19976 4.27060 4.42224 4.56151 4.57638 4.65403 4.65754 4.72835 4.82454 4.85207 4.94891 5.02244 5.11191 5.18297 5.26396 5.35676 5.38498 5.39554 5.52225 5.60590 5.62912 5.66787 5.99841 6.30590 6.48715 7.09408 7.38058 8.10558 8.35681 9.27965 Molecular weight = 325.13amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.004063 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.079316 B = 6890.348161 C = 8197.261289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.414 5.414 3 C 0.058 3.942 4 C -0.143 4.143 5 Cl -0.044 7.044 6 C -0.114 4.114 7 C -0.064 4.064 8 C 0.580 3.420 9 O -0.578 6.578 10 N -0.702 5.702 11 C 0.119 3.881 12 C 0.184 3.816 13 N -0.712 5.712 14 C -0.217 4.217 15 H 0.063 0.937 16 C -0.060 4.060 17 N -0.957 5.957 18 Si 0.945 3.055 19 H -0.278 1.278 20 H -0.299 1.299 21 H -0.294 1.294 22 C -0.132 4.132 23 C -0.113 4.113 24 C -0.111 4.111 25 C -0.123 4.123 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.091 0.909 29 H 0.219 0.781 30 H 0.146 0.854 31 H 0.406 0.594 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.376 0.624 35 H 0.248 0.752 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 7.730 -14.528 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.089 5.089 3 C -0.079 4.079 4 C -0.176 4.176 5 Cl -0.015 7.015 6 C -0.141 4.141 7 C -0.176 4.176 8 C 0.368 3.632 9 O -0.459 6.459 10 N -0.357 5.357 11 C -0.007 4.007 12 C 0.094 3.906 13 N -0.353 5.353 14 C -0.349 4.349 15 H 0.081 0.919 16 C -0.253 4.253 17 N -0.608 5.608 18 Si 0.777 3.223 19 H -0.204 1.204 20 H -0.227 1.227 21 H -0.221 1.221 22 C -0.171 4.171 23 C -0.151 4.151 24 C -0.149 4.149 25 C -0.161 4.161 26 H 0.101 0.899 27 H 0.162 0.838 28 H 0.110 0.890 29 H 0.236 0.764 30 H 0.164 0.836 31 H 0.247 0.753 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.210 0.790 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.344 6.988 -14.483 16.251 hybrid contribution 0.322 0.080 1.713 1.745 sum 2.666 7.069 -12.770 14.838 Atomic orbital electron populations 1.22727 0.74166 1.07738 1.04749 1.44142 1.07656 1.04598 1.52477 1.22330 0.88092 0.93318 1.04206 1.19960 0.89107 0.90608 1.17900 1.98311 1.40585 1.64878 1.97768 1.21205 0.95275 0.93795 1.03824 1.20262 0.91124 0.86747 1.19508 1.17298 0.82694 0.86797 0.76430 1.90775 1.54963 1.47548 1.52591 1.46199 1.07074 1.10408 1.71975 1.21957 0.97474 0.81614 0.99620 1.20697 0.90127 0.93417 0.86395 1.42591 1.63919 1.28401 1.00365 1.19276 1.21426 1.08814 0.85367 0.91901 1.25145 1.00615 1.00066 0.99482 1.69757 1.37152 1.29214 1.24697 0.85497 0.77792 0.77205 0.81846 1.20358 1.22657 1.22111 1.22747 0.97531 0.96406 1.00466 1.22346 0.95853 0.99595 0.97258 1.22284 0.99420 0.95615 0.97551 1.22430 0.98441 0.98938 0.96289 0.89884 0.83840 0.89043 0.76412 0.83631 0.75261 0.91270 0.94734 0.79014 0.94278 0.91181 0.93262 0.93349 0.90461 0.90490 0.90182 0.91287 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.78 9.48 127.77 1.21 1.99 16 2 N -0.41 -9.54 3.16 -534.18 -1.69 -11.23 16 3 C 0.06 1.16 11.34 83.48 0.95 2.10 16 4 C -0.14 -3.52 6.66 22.04 0.15 -3.37 16 5 Cl -0.04 -0.96 29.30 -2.72 -0.08 -1.04 16 6 C -0.11 -3.43 10.66 22.59 0.24 -3.19 16 7 C -0.06 -1.98 6.88 40.35 0.28 -1.71 16 8 C 0.58 21.16 7.76 86.44 0.67 21.83 16 9 O -0.58 -25.05 16.91 -4.35 -0.07 -25.12 16 10 N -0.70 -23.19 4.83 -467.09 -2.25 -25.44 16 11 C 0.12 4.23 4.32 86.38 0.37 4.60 16 12 C 0.18 6.20 0.69 4.33 0.00 6.21 16 13 N -0.71 -30.65 5.05 -300.08 -1.52 -32.17 16 14 C -0.22 -11.07 8.25 84.03 0.69 -10.37 16 15 H 0.06 3.29 7.18 -2.91 -0.02 3.27 16 16 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 17 N -0.96 -54.09 13.08 21.65 0.28 -53.81 16 18 Si 0.94 45.65 29.56 68.60 2.03 47.68 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 21 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 22 C -0.13 -4.30 5.91 31.67 0.19 -4.12 16 23 C -0.11 -3.05 6.91 31.88 0.22 -2.83 16 24 C -0.11 -2.44 6.83 31.67 0.22 -2.23 16 25 C -0.12 -3.13 5.55 31.32 0.17 -2.96 16 26 H 0.08 1.72 8.05 -2.39 -0.02 1.70 16 27 H 0.14 1.15 8.11 -2.39 -0.02 1.13 16 28 H 0.09 1.50 6.17 -2.39 -0.01 1.49 16 29 H 0.22 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.41 11.59 3.53 -92.71 -0.33 11.26 16 32 H 0.07 2.26 8.08 -2.39 -0.02 2.24 16 33 H 0.03 1.48 7.45 -2.39 -0.02 1.46 16 34 H 0.38 17.05 7.32 -92.71 -0.68 16.37 16 35 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 36 H 0.07 2.04 7.81 -2.39 -0.02 2.02 16 37 H 0.05 1.94 6.80 -2.38 -0.02 1.92 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.79 7.46 -2.38 -0.02 1.77 16 43 H 0.08 1.70 7.24 -2.39 -0.02 1.68 16 Total: -1.00 -68.09 362.16 2.56 -65.53 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.04 Total: 32.43 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.83 Total: 3.17 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -5.18 Total: -122.65 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.07 Total: -25.12 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -68.09 2.56 -65.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753665798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.194 kcal (2) G-P(sol) polarization free energy of solvation -68.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds