Wall clock time and date at job start Tue Mar 31 2020 14:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35704 * 117.00232 * 2 1 4 4 C 1.38996 * 119.90944 * 180.02562 * 3 2 1 5 5 C 1.37700 * 120.09078 * 180.02562 * 4 3 2 6 6 C 1.39747 * 119.90851 * 359.97438 * 5 4 3 7 7 C 1.47575 * 120.09062 * 179.97438 * 6 5 4 8 8 O 1.21598 * 120.00088 * 330.20312 * 7 6 5 9 9 N 1.34775 * 120.00505 * 150.20338 * 7 6 5 10 10 C 1.46508 * 119.99418 * 6.28138 * 9 7 6 11 11 C 1.50697 * 109.46641 * 98.28721 * 10 9 7 12 12 H 1.08005 * 120.00240 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00067 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99455 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00117 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47392 * 59.99753 * 15 13 11 17 17 H 1.48499 * 109.47111 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47357 * 300.00056 * 15 13 11 19 19 C 1.39848 * 120.00541 * 186.28798 * 9 7 6 20 20 C 1.38883 * 120.07299 * 172.98912 * 19 9 7 21 21 C 1.38110 * 119.92538 * 179.72328 * 20 19 9 22 22 C 1.38290 * 120.07257 * 0.56969 * 21 20 19 23 23 C 1.50697 * 119.92896 * 179.70359 * 22 21 20 24 24 C 1.38284 * 120.14265 * 359.68504 * 22 21 20 25 25 C 1.38105 * 120.07479 * 0.03977 * 24 22 21 26 26 C 1.39742 * 119.82434 * 0.25598 * 6 5 4 27 27 C 1.37709 * 119.90753 * 359.51173 * 26 6 5 28 28 H 1.08997 * 109.47331 * 59.99403 * 1 2 3 29 29 H 1.08999 * 109.47909 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46714 * 300.00185 * 1 2 3 31 31 H 1.08003 * 119.95766 * 359.97361 * 4 3 2 32 32 H 1.08000 * 120.05091 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.47004 * 218.28246 * 10 9 7 34 34 H 1.08993 * 109.47360 * 338.28740 * 10 9 7 35 35 H 0.97004 * 119.99462 * 179.97438 * 14 13 11 36 36 H 1.07995 * 120.04041 * 359.97438 * 20 19 9 37 37 H 1.08000 * 119.96404 * 180.25258 * 21 20 19 38 38 H 1.08996 * 109.46992 * 269.98403 * 23 22 21 39 39 H 1.09003 * 109.47285 * 29.98035 * 23 22 21 40 40 H 1.09001 * 109.47343 * 149.97787 * 23 22 21 41 41 H 1.08002 * 119.96320 * 180.02562 * 24 22 21 42 42 H 1.07999 * 120.04141 * 179.97438 * 25 24 22 43 43 H 1.08002 * 120.04948 * 179.72899 * 26 6 5 44 44 H 1.07999 * 119.95434 * 180.23368 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4333 1.2796 -0.0005 5 6 4.0624 2.5045 0.0000 6 6 3.3032 3.6778 0.0005 7 6 3.9732 4.9926 0.0017 8 8 5.0633 5.1191 0.5254 9 7 3.3770 6.0534 -0.5778 10 6 2.0080 5.9366 -1.0865 11 6 1.0453 6.4949 -0.0703 12 1 1.4161 6.8962 0.8614 13 6 -0.3088 6.4935 -0.3300 14 7 -0.7602 6.0054 -1.4647 15 14 -1.5021 7.1849 0.9298 16 1 -1.1861 8.6145 1.1787 17 1 -2.8897 7.0668 0.4142 18 1 -1.3794 6.4228 2.1984 19 6 4.0650 7.2654 -0.6936 20 6 3.5111 8.3137 -1.4170 21 6 4.1906 9.5112 -1.5246 22 6 5.4265 9.6632 -0.9230 23 6 6.1681 10.9691 -1.0482 24 6 5.9831 8.6196 -0.2065 25 6 5.3063 7.4214 -0.0902 26 6 1.9078 3.6026 0.0059 27 6 1.2863 2.3737 0.0006 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.0194 0.3724 -0.0005 32 1 5.1410 2.5585 0.0000 33 1 1.9176 6.4954 -2.0179 34 1 1.7762 4.8873 -1.2683 35 1 -1.7129 6.0041 -1.6473 36 1 2.5484 8.1939 -1.8914 37 1 3.7587 10.3281 -2.0836 38 1 6.8050 10.9419 -1.9323 39 1 5.4524 11.7860 -1.1409 40 1 6.7833 11.1240 -0.1618 41 1 6.9482 8.7417 0.2626 42 1 5.7416 6.6066 0.4692 43 1 1.3175 4.5070 0.0108 44 1 0.2080 2.3148 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060851791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:14 Heat of formation + Delta-G solvation = 4.134322 kcal Electronic energy + Delta-G solvation = -27352.546126 eV Core-core repulsion = 23622.202501 eV Total energy + Delta-G solvation = -3730.343626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.12668 -40.89405 -39.55349 -38.07770 -37.24634 -34.86221 -33.17476 -32.02143 -31.77164 -31.15008 -29.58593 -28.42553 -27.12353 -25.42759 -24.26455 -23.82902 -23.00261 -22.14509 -20.89147 -19.10469 -18.81879 -18.38666 -18.14372 -17.06659 -16.74376 -16.67591 -16.50777 -16.22746 -15.90225 -15.64309 -15.07318 -14.83230 -14.67043 -14.52413 -14.39015 -14.31523 -14.21625 -13.76205 -13.52620 -13.24482 -13.02461 -12.93726 -12.87902 -12.78560 -12.63868 -12.38504 -12.23274 -12.01295 -11.92001 -11.84537 -11.31277 -10.80140 -10.71202 -10.25891 -9.93924 -9.77811 -9.27286 -8.65783 -8.27443 -6.47238 -0.13674 0.38285 0.52914 0.57989 1.38215 1.40215 1.47227 1.78381 2.04365 2.28546 2.34789 2.77963 2.97282 3.01718 3.51750 3.88940 3.90018 4.07428 4.12303 4.26279 4.30291 4.38139 4.38806 4.47492 4.52717 4.55145 4.61508 4.64387 4.73201 4.88197 4.91458 4.93805 5.09722 5.10899 5.11581 5.21432 5.26834 5.41933 5.42740 5.53250 5.57624 5.61607 5.68433 5.75792 5.82719 5.87830 6.32469 6.34597 6.39890 6.66706 7.10013 7.23984 8.72901 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010730 B = 0.004689 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.813965 B = 5969.671609 C = 8132.132625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.320 6.320 3 C 0.152 3.848 4 C -0.168 4.168 5 C -0.024 4.024 6 C -0.200 4.200 7 C 0.555 3.445 8 O -0.557 6.557 9 N -0.535 5.535 10 C 0.216 3.784 11 C -0.549 4.549 12 H 0.047 0.953 13 C 0.040 3.960 14 N -0.900 5.900 15 Si 0.950 3.050 16 H -0.277 1.277 17 H -0.272 1.272 18 H -0.271 1.271 19 C 0.135 3.865 20 C -0.157 4.157 21 C -0.104 4.104 22 C -0.123 4.123 23 C -0.101 4.101 24 C -0.106 4.106 25 C -0.193 4.193 26 C -0.071 4.071 27 C -0.225 4.225 28 H 0.059 0.941 29 H 0.130 0.870 30 H 0.061 0.939 31 H 0.163 0.837 32 H 0.147 0.853 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.274 0.726 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.143 0.857 42 H 0.167 0.833 43 H 0.178 0.822 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.861 -3.734 0.238 6.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.233 6.233 3 C 0.106 3.894 4 C -0.187 4.187 5 C -0.043 4.043 6 C -0.204 4.204 7 C 0.349 3.651 8 O -0.441 6.441 9 N -0.253 5.253 10 C 0.097 3.903 11 C -0.587 4.587 12 H 0.065 0.935 13 C -0.163 4.163 14 N -0.537 5.537 15 Si 0.774 3.226 16 H -0.202 1.202 17 H -0.197 1.197 18 H -0.196 1.196 19 C 0.040 3.960 20 C -0.177 4.177 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.157 4.157 24 C -0.125 4.125 25 C -0.213 4.213 26 C -0.088 4.088 27 C -0.243 4.243 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.079 0.921 31 H 0.180 0.820 32 H 0.165 0.835 33 H 0.041 0.959 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.134 0.866 37 H 0.161 0.839 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.161 0.839 42 H 0.184 0.816 43 H 0.195 0.805 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.239 -3.978 0.369 6.588 hybrid contribution -1.417 0.583 0.393 1.582 sum 3.822 -3.394 0.763 5.169 Atomic orbital electron populations 1.23396 0.76410 1.05876 1.02164 1.85984 1.23449 1.26108 1.87768 1.19461 0.92784 0.84317 0.92842 1.20501 0.91208 0.98670 1.08285 1.21093 1.00431 0.89786 0.92958 1.19726 0.94427 0.92699 1.13499 1.18746 0.84289 0.84770 0.77273 1.90291 1.22497 1.84562 1.46734 1.45791 1.16304 1.08900 1.54337 1.20258 0.75306 1.00050 0.94658 1.21282 0.91782 1.42165 1.03446 0.93510 1.25501 0.99126 0.94618 0.97065 1.69984 1.15737 1.44224 1.23764 0.85729 0.78215 0.79089 0.79531 1.20221 1.19713 1.19560 1.18339 0.93101 0.86381 0.98208 1.21037 1.01066 0.93801 1.01834 1.21061 0.94896 0.96342 0.99949 1.20261 0.95457 0.97651 0.99027 1.20732 0.99813 0.92127 1.03065 1.21248 1.00217 0.92001 0.99002 1.22765 0.94715 1.01240 1.02565 1.22998 0.94473 1.01401 0.89969 1.21366 1.01006 0.91649 1.10318 0.92279 0.85170 0.92077 0.81986 0.83514 0.95882 0.90948 0.91617 0.86597 0.83920 0.90316 0.90826 0.90673 0.83891 0.81649 0.80518 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.32 -8.44 10.48 -90.24 -0.95 -9.38 16 3 C 0.15 4.72 6.70 22.63 0.15 4.87 16 4 C -0.17 -4.93 9.97 22.32 0.22 -4.71 16 5 C -0.02 -0.80 9.59 22.51 0.22 -0.59 16 6 C -0.20 -8.19 5.58 -20.09 -0.11 -8.30 16 7 C 0.56 25.25 7.40 86.71 0.64 25.89 16 8 O -0.56 -25.76 13.10 -4.02 -0.05 -25.81 16 9 N -0.54 -25.13 2.70 -638.81 -1.72 -26.85 16 10 C 0.22 10.60 4.07 85.63 0.35 10.95 16 11 C -0.55 -28.28 7.40 25.60 0.19 -28.09 16 12 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 13 C 0.04 2.02 5.33 84.66 0.45 2.47 16 14 N -0.90 -46.17 13.29 21.45 0.28 -45.89 16 15 Si 0.95 40.35 29.54 68.60 2.03 42.38 16 16 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 19 C 0.13 6.03 6.43 38.17 0.25 6.27 16 20 C -0.16 -6.53 9.22 22.39 0.21 -6.33 16 21 C -0.10 -3.52 9.69 22.25 0.22 -3.30 16 22 C -0.12 -3.73 5.88 -19.84 -0.12 -3.85 16 23 C -0.10 -2.09 10.01 71.24 0.71 -1.37 16 24 C -0.11 -3.54 9.69 22.25 0.22 -3.32 16 25 C -0.19 -7.96 9.06 22.40 0.20 -7.76 16 26 C -0.07 -2.94 7.46 22.51 0.17 -2.77 16 27 C -0.22 -7.89 9.01 22.33 0.20 -7.69 16 28 H 0.06 1.17 7.65 -2.39 -0.02 1.15 16 29 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.16 7.65 -2.38 -0.02 1.14 16 31 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 32 H 0.15 4.45 7.92 -2.91 -0.02 4.43 16 33 H 0.02 1.20 6.40 -2.39 -0.02 1.19 16 34 H 0.07 3.59 4.07 -2.43 -0.01 3.58 16 35 H 0.27 13.27 8.31 -92.70 -0.77 12.50 16 36 H 0.12 5.17 6.19 -2.91 -0.02 5.15 16 37 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 40 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 41 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 42 H 0.17 7.26 4.52 -62.96 -0.28 6.97 16 43 H 0.18 8.37 3.04 -2.91 -0.01 8.36 16 44 H 0.14 4.51 6.28 -2.91 -0.02 4.49 16 Total: -1.00 -60.99 359.19 5.63 -55.37 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: 0.77 Total: 36.40 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 5.27 Total: -26.20 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.44 Total: -72.74 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -1.00 Total: -35.20 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -60.99 5.63 -55.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060851791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.501 kcal (2) G-P(sol) polarization free energy of solvation -60.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds