Wall clock time and date at job start Tue Mar 31 2020 14:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38261 * 120.00011 * 2 1 4 4 C 1.38208 * 119.99798 * 179.97438 * 3 2 1 5 5 C 1.38264 * 120.00334 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00070 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47045 * 90.00144 * 6 5 4 8 8 O 1.21289 * 119.99821 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99944 * 179.97438 * 7 6 5 10 10 C 1.39996 * 120.00112 * 175.49391 * 9 7 6 11 11 C 1.38918 * 120.00152 * 214.84999 * 10 9 7 12 12 C 1.38004 * 120.00053 * 179.78695 * 11 10 9 13 13 C 1.38906 * 119.99621 * 0.46305 * 12 11 10 14 14 O 1.35784 * 119.99855 * 179.76677 * 13 12 11 15 15 C 1.34807 * 117.00414 * 185.36244 * 14 13 12 16 16 H 1.08002 * 119.99555 * 354.96332 * 15 14 13 17 17 C 1.38628 * 120.00281 * 174.96121 * 15 14 13 18 18 N 1.31573 * 119.99900 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99862 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47483 * 89.99644 * 19 17 15 21 21 H 1.48499 * 109.47157 * 209.99846 * 19 17 15 22 22 H 1.48504 * 109.46902 * 329.99532 * 19 17 15 23 23 C 1.38907 * 120.00614 * 359.78564 * 13 12 11 24 24 C 1.38000 * 120.00030 * 359.97438 * 23 13 12 25 25 C 1.38210 * 119.99692 * 359.97438 * 5 4 3 26 26 C 1.38216 * 120.00012 * 179.73243 * 2 1 3 27 27 C 1.50703 * 119.99675 * 359.97438 * 26 2 1 28 28 H 1.08996 * 109.47571 * 89.99440 * 1 2 3 29 29 H 1.09006 * 109.46668 * 329.99551 * 1 2 3 30 30 H 1.08998 * 109.46902 * 210.00570 * 1 2 3 31 31 H 1.08001 * 119.99886 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.99909 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.46836 * 210.00236 * 6 5 4 34 34 H 1.09000 * 109.47130 * 329.99718 * 6 5 4 35 35 H 0.97000 * 119.99923 * 355.48945 * 9 7 6 36 36 H 1.08008 * 120.00078 * 0.02562 * 11 10 9 37 37 H 1.07995 * 120.00033 * 180.22924 * 12 11 10 38 38 H 0.97008 * 119.99932 * 180.02562 * 18 17 15 39 39 H 1.08005 * 119.99926 * 179.97438 * 23 13 12 40 40 H 1.08004 * 119.99705 * 179.97438 * 24 23 13 41 41 H 1.08004 * 119.99808 * 179.97438 * 25 5 4 42 42 H 1.08997 * 109.46844 * 90.00220 * 27 26 2 43 43 H 1.08997 * 109.46696 * 210.00278 * 27 26 2 44 44 H 1.08996 * 109.47235 * 330.00179 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 0.0000 0.0005 7 6 6.2810 -0.0001 1.4213 8 8 5.4928 0.0004 2.3432 9 7 7.6061 -0.0006 1.6676 10 6 8.0735 0.0946 2.9838 11 6 9.2460 0.7880 3.2561 12 6 9.7044 0.8856 4.5541 13 6 8.9984 0.2823 5.5871 14 8 9.4519 0.3743 6.8637 15 6 8.7834 -0.3248 7.8026 16 1 7.8816 -0.8575 7.5391 17 6 9.2535 -0.3600 9.1063 18 7 8.6007 -1.0420 10.0228 19 14 10.8129 0.5619 9.5621 20 1 10.4658 1.9416 9.9876 21 1 11.4966 -0.1425 10.6763 22 1 11.7159 0.6194 8.3846 23 6 7.8287 -0.4154 5.3143 24 6 7.3676 -0.5088 4.0170 25 6 3.5806 -1.1970 0.0005 26 6 2.1981 -1.1970 0.0056 27 6 1.4445 -2.5020 0.0123 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8899 0.5139 31 1 1.6583 2.1327 0.0004 32 1 4.1204 2.1326 0.0001 33 1 6.1420 -0.8900 -0.5133 34 1 6.1421 0.8899 -0.5133 35 1 8.2359 -0.0670 0.9329 36 1 9.7969 1.2540 2.4524 37 1 10.6140 1.4277 4.7662 38 1 8.9294 -1.0663 10.9352 39 1 7.2800 -0.8848 6.1175 40 1 6.4583 -1.0517 3.8049 41 1 4.1207 -2.1323 0.0001 42 1 1.2625 -2.8217 -1.0138 43 1 2.0337 -3.2591 0.5296 44 1 0.4923 -2.3692 0.5258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072576370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:49 Heat of formation + Delta-G solvation = -16.890096 kcal Electronic energy + Delta-G solvation = -25701.634235 eV Core-core repulsion = 21970.378922 eV Total energy + Delta-G solvation = -3731.255313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.43697 -39.56908 -38.70502 -36.66034 -34.33680 -33.99354 -32.40681 -32.30326 -30.34489 -30.12543 -28.10650 -27.32432 -25.60094 -24.88759 -22.58667 -22.24424 -21.58811 -20.44732 -19.83529 -18.09776 -17.56308 -16.82869 -16.70503 -16.18051 -15.89902 -15.08624 -14.93112 -14.60358 -14.39272 -14.02296 -13.94316 -13.78267 -13.69628 -13.29786 -13.03796 -12.96343 -12.94420 -12.74186 -12.43153 -12.29366 -12.11489 -12.08323 -11.77188 -11.68470 -11.58440 -11.11279 -11.00882 -10.94669 -10.72697 -10.24440 -9.74831 -9.64945 -9.22585 -8.82846 -8.75479 -8.53813 -8.27710 -7.05454 -6.39555 -4.05448 1.18819 1.31150 2.00645 2.12889 2.81954 3.22447 3.24159 3.26796 3.40739 3.70612 4.24888 4.43613 4.48690 4.59264 4.71419 4.84791 4.85337 4.90278 4.92340 5.07288 5.12278 5.22139 5.27567 5.30146 5.41546 5.45976 5.55961 5.58412 5.63536 5.66224 5.70165 6.00025 6.05645 6.09524 6.11517 6.25977 6.32321 6.46025 6.53134 6.60401 6.77233 6.90109 6.93499 7.11767 7.31339 7.57137 7.68356 7.81526 8.04441 8.36062 8.95378 9.57200 10.68103 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.002305 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.618384 B =12144.489282 C =12981.587786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.106 4.106 5 C -0.066 4.066 6 C -0.100 4.100 7 C 0.505 3.495 8 O -0.513 6.513 9 N -0.665 5.665 10 C 0.044 3.956 11 C -0.097 4.097 12 C -0.178 4.178 13 C 0.151 3.849 14 O -0.217 6.217 15 C -0.388 4.388 16 H 0.107 0.893 17 C 0.062 3.938 18 N -0.879 5.879 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.207 4.207 24 C -0.067 4.067 25 C -0.101 4.101 26 C -0.087 4.087 27 C -0.117 4.117 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.402 0.598 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.279 0.721 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.349 1.160 -25.061 26.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.067 4.067 6 C -0.140 4.140 7 C 0.291 3.709 8 O -0.388 6.388 9 N -0.310 5.310 10 C -0.048 4.048 11 C -0.117 4.117 12 C -0.198 4.198 13 C 0.099 3.901 14 O -0.122 6.122 15 C -0.464 4.464 16 H 0.124 0.876 17 C -0.141 4.141 18 N -0.517 5.517 19 Si 0.732 3.268 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.226 4.226 24 C -0.086 4.086 25 C -0.119 4.119 26 C -0.087 4.087 27 C -0.173 4.173 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.236 0.764 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.154 0.846 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.776 1.219 -24.068 26.006 hybrid contribution 0.947 0.330 0.061 1.005 sum -8.829 1.549 -24.007 25.625 Atomic orbital electron populations 1.20849 0.91466 1.02898 1.02080 1.19739 0.95875 0.92723 1.00608 1.20938 0.94048 0.97385 1.01027 1.20925 0.94237 0.97311 0.99895 1.19195 0.93427 0.93558 1.00511 1.20652 0.93452 1.05138 0.94712 1.20586 0.82141 0.76842 0.91283 1.90752 1.55009 1.47233 1.45796 1.43253 1.06975 1.73357 1.07402 1.17324 0.98181 1.05702 0.83637 1.20353 0.96315 0.99093 0.95923 1.19982 1.02158 1.07114 0.90523 1.19150 0.92199 0.93833 0.84942 1.83561 1.53131 1.62550 1.12936 1.20779 1.08960 1.28866 0.87784 0.87593 1.24471 0.98873 0.96457 0.94264 1.69661 1.39608 1.39556 1.02914 0.86170 0.82465 0.79631 0.78560 1.19893 1.20835 1.18352 1.21234 0.98552 1.05817 0.97046 1.20913 0.99050 0.97190 0.91493 1.20816 0.93505 0.97348 1.00208 1.19685 0.93553 0.94884 1.00583 1.20848 1.00209 0.94167 1.02086 0.91345 0.91675 0.91178 0.86173 0.86297 0.88035 0.87959 0.76371 0.86579 0.86089 0.91062 0.84620 0.85505 0.86288 0.91329 0.91557 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.61 36.01 0.35 -0.54 16 2 C -0.09 -0.93 5.88 -104.62 -0.62 -1.54 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 5 C -0.07 -0.75 4.37 -104.62 -0.46 -1.20 16 6 C -0.10 -0.91 5.83 -29.03 -0.17 -1.08 16 7 C 0.50 6.89 7.67 -10.99 -0.08 6.81 16 8 O -0.51 -9.50 13.47 5.55 0.07 -9.42 16 9 N -0.66 -8.55 5.34 -9.82 -0.05 -8.60 16 10 C 0.04 0.76 6.30 -83.62 -0.53 0.23 16 11 C -0.10 -1.59 9.96 -39.42 -0.39 -1.99 16 12 C -0.18 -3.48 9.99 -39.42 -0.39 -3.88 16 13 C 0.15 3.54 6.65 -39.09 -0.26 3.28 16 14 O -0.22 -5.78 8.58 0.01 0.00 -5.78 16 15 C -0.39 -11.12 9.94 30.88 0.31 -10.82 16 16 H 0.11 3.12 5.43 -52.49 -0.28 2.84 16 17 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 18 N -0.88 -25.77 13.96 55.48 0.77 -24.99 16 19 Si 0.91 21.83 28.62 -169.99 -4.86 16.97 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.26 -6.23 7.11 56.52 0.40 -5.82 16 23 C -0.21 -4.71 9.16 -39.42 -0.36 -5.07 16 24 C -0.07 -1.35 8.69 -39.42 -0.34 -1.69 16 25 C -0.10 -1.12 9.36 -39.58 -0.37 -1.50 16 26 C -0.09 -0.93 5.88 -104.62 -0.62 -1.54 16 27 C -0.12 -0.94 9.60 36.01 0.35 -0.60 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.07 0.49 5.94 -51.93 -0.31 0.18 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.10 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.40 3.48 8.82 -40.82 -0.36 3.12 16 36 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.14 3.27 5.63 -52.48 -0.30 2.97 16 40 H 0.13 2.60 6.23 -52.48 -0.33 2.27 16 41 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 44 H 0.07 0.51 5.94 -51.93 -0.31 0.20 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -33.94 370.29 -8.60 -42.54 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.66 Total: 6.33 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -4.45 Total: -22.63 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.72 Total: -33.59 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.07 Total: -15.20 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.86 Total: 16.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.94 -8.60 -42.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072576370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.654 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds