Wall clock time and date at job start Tue Mar 31 2020 14:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38261 * 120.00011 * 2 1 4 4 C 1.38208 * 119.99798 * 179.97438 * 3 2 1 5 5 C 1.38264 * 120.00334 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00070 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47045 * 90.00144 * 6 5 4 8 8 O 1.21289 * 119.99821 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99944 * 179.97438 * 7 6 5 10 10 C 1.39996 * 120.00112 * 175.49391 * 9 7 6 11 11 C 1.38918 * 120.00152 * 214.84999 * 10 9 7 12 12 C 1.38004 * 120.00053 * 179.78695 * 11 10 9 13 13 C 1.38906 * 119.99621 * 0.46305 * 12 11 10 14 14 O 1.35784 * 119.99855 * 179.76677 * 13 12 11 15 15 C 1.34807 * 117.00414 * 185.36244 * 14 13 12 16 16 H 1.08002 * 119.99555 * 354.96332 * 15 14 13 17 17 C 1.38628 * 120.00281 * 174.96121 * 15 14 13 18 18 N 1.31573 * 119.99900 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99862 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47483 * 89.99644 * 19 17 15 21 21 H 1.48499 * 109.47157 * 209.99846 * 19 17 15 22 22 H 1.48504 * 109.46902 * 329.99532 * 19 17 15 23 23 C 1.38907 * 120.00614 * 359.78564 * 13 12 11 24 24 C 1.38000 * 120.00030 * 359.97438 * 23 13 12 25 25 C 1.38210 * 119.99692 * 359.97438 * 5 4 3 26 26 C 1.38216 * 120.00012 * 179.73243 * 2 1 3 27 27 C 1.50703 * 119.99675 * 359.97438 * 26 2 1 28 28 H 1.08996 * 109.47571 * 89.99440 * 1 2 3 29 29 H 1.09006 * 109.46668 * 329.99551 * 1 2 3 30 30 H 1.08998 * 109.46902 * 210.00570 * 1 2 3 31 31 H 1.08001 * 119.99886 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.99909 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.46836 * 210.00236 * 6 5 4 34 34 H 1.09000 * 109.47130 * 329.99718 * 6 5 4 35 35 H 0.97000 * 119.99923 * 355.48945 * 9 7 6 36 36 H 1.08008 * 120.00078 * 0.02562 * 11 10 9 37 37 H 1.07995 * 120.00033 * 180.22924 * 12 11 10 38 38 H 0.97008 * 119.99932 * 180.02562 * 18 17 15 39 39 H 1.08005 * 119.99926 * 179.97438 * 23 13 12 40 40 H 1.08004 * 119.99705 * 179.97438 * 24 23 13 41 41 H 1.08004 * 119.99808 * 179.97438 * 25 5 4 42 42 H 1.08997 * 109.46844 * 90.00220 * 27 26 2 43 43 H 1.08997 * 109.46696 * 210.00278 * 27 26 2 44 44 H 1.08996 * 109.47235 * 330.00179 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 5.7787 0.0000 0.0005 7 6 6.2810 -0.0001 1.4213 8 8 5.4928 0.0004 2.3432 9 7 7.6061 -0.0006 1.6676 10 6 8.0735 0.0946 2.9838 11 6 9.2460 0.7880 3.2561 12 6 9.7044 0.8856 4.5541 13 6 8.9984 0.2823 5.5871 14 8 9.4519 0.3743 6.8637 15 6 8.7834 -0.3248 7.8026 16 1 7.8816 -0.8575 7.5391 17 6 9.2535 -0.3600 9.1063 18 7 8.6007 -1.0420 10.0228 19 14 10.8129 0.5619 9.5621 20 1 10.4658 1.9416 9.9876 21 1 11.4966 -0.1425 10.6763 22 1 11.7159 0.6194 8.3846 23 6 7.8287 -0.4154 5.3143 24 6 7.3676 -0.5088 4.0170 25 6 3.5806 -1.1970 0.0005 26 6 2.1981 -1.1970 0.0056 27 6 1.4445 -2.5020 0.0123 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8899 0.5139 31 1 1.6583 2.1327 0.0004 32 1 4.1204 2.1326 0.0001 33 1 6.1420 -0.8900 -0.5133 34 1 6.1421 0.8899 -0.5133 35 1 8.2359 -0.0670 0.9329 36 1 9.7969 1.2540 2.4524 37 1 10.6140 1.4277 4.7662 38 1 8.9294 -1.0663 10.9352 39 1 7.2800 -0.8848 6.1175 40 1 6.4583 -1.0517 3.8049 41 1 4.1207 -2.1323 0.0001 42 1 1.2625 -2.8217 -1.0138 43 1 2.0337 -3.2591 0.5296 44 1 0.4923 -2.3692 0.5258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072576370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:48 Heat of formation + Delta-G solvation = -37.145029 kcal Electronic energy + Delta-G solvation = -25702.512555 eV Core-core repulsion = 21970.378922 eV Total energy + Delta-G solvation = -3732.133633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61936 -40.73534 -40.09741 -38.24221 -35.39409 -35.12745 -34.37767 -33.13291 -31.90967 -31.10424 -29.46485 -28.09668 -27.20053 -26.08354 -24.10083 -23.16526 -22.93236 -21.63496 -20.79981 -19.92527 -19.26439 -18.24648 -17.98604 -17.02366 -16.72617 -16.56292 -16.02834 -15.76351 -15.72510 -15.61008 -15.40493 -15.20057 -14.87653 -14.43919 -14.22412 -14.13601 -14.04057 -13.72479 -13.65374 -13.58747 -13.33606 -13.28058 -12.81500 -12.74147 -12.65504 -12.51285 -12.46938 -12.01927 -11.84061 -11.71921 -11.49890 -11.16836 -10.85821 -10.60505 -9.87266 -9.61862 -9.30980 -8.67826 -8.50432 -6.23078 0.38377 0.47607 0.51582 0.51587 1.31847 1.36751 1.52841 1.67686 2.16807 2.28377 2.75656 2.86754 3.02505 3.16057 3.65886 3.88023 3.94639 4.02623 4.08548 4.13631 4.14300 4.26514 4.41696 4.45489 4.54353 4.60092 4.64813 4.70321 4.71550 4.76467 4.86238 4.87351 5.02519 5.03574 5.05294 5.19046 5.27594 5.36568 5.40266 5.49115 5.55166 5.59685 5.66754 5.74092 5.77329 5.90817 6.17170 6.19870 6.57971 6.83084 7.29297 7.55818 8.61592 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.002305 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.618384 B =12144.489282 C =12981.587786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.103 4.103 3 C -0.131 4.131 4 C -0.123 4.123 5 C -0.084 4.084 6 C -0.087 4.087 7 C 0.504 3.496 8 O -0.566 6.566 9 N -0.650 5.650 10 C 0.072 3.928 11 C -0.078 4.078 12 C -0.168 4.168 13 C 0.111 3.889 14 O -0.240 6.240 15 C -0.401 4.401 16 H 0.074 0.926 17 C 0.007 3.993 18 N -0.926 5.926 19 Si 0.977 3.023 20 H -0.266 1.266 21 H -0.267 1.267 22 H -0.257 1.257 23 C -0.225 4.225 24 C -0.083 4.083 25 C -0.119 4.119 26 C -0.104 4.104 27 C -0.115 4.115 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.429 0.571 36 H 0.175 0.825 37 H 0.145 0.855 38 H 0.285 0.715 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.760 2.613 -28.929 30.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.103 4.103 3 C -0.149 4.149 4 C -0.141 4.141 5 C -0.084 4.084 6 C -0.126 4.126 7 C 0.293 3.707 8 O -0.444 6.444 9 N -0.298 5.298 10 C -0.022 4.022 11 C -0.098 4.098 12 C -0.187 4.187 13 C 0.061 3.939 14 O -0.148 6.148 15 C -0.477 4.477 16 H 0.091 0.909 17 C -0.191 4.191 18 N -0.567 5.567 19 Si 0.798 3.202 20 H -0.191 1.191 21 H -0.192 1.192 22 H -0.181 1.181 23 C -0.245 4.245 24 C -0.103 4.103 25 C -0.137 4.137 26 C -0.104 4.104 27 C -0.172 4.172 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.269 0.731 36 H 0.193 0.807 37 H 0.163 0.837 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.180 2.667 -28.035 29.325 hybrid contribution 0.262 -0.137 0.883 0.931 sum -7.918 2.531 -27.152 28.396 Atomic orbital electron populations 1.20889 0.89780 1.03345 1.03127 1.20115 0.97356 0.92667 1.00171 1.21249 0.94376 0.98242 1.01025 1.21209 0.94738 0.97943 1.00170 1.19484 0.94750 0.93512 1.00666 1.20701 0.92005 1.08341 0.91529 1.21472 0.81617 0.74865 0.92704 1.90757 1.56368 1.49367 1.47922 1.43196 1.07639 1.72696 1.06237 1.17476 0.97209 1.02599 0.84919 1.20885 0.95545 0.97301 0.96080 1.20425 1.02224 1.05528 0.90530 1.19695 0.93285 0.95903 0.84985 1.83498 1.53616 1.63822 1.13824 1.20669 1.08580 1.29393 0.89059 0.90868 1.25369 1.02405 0.97468 0.93891 1.69758 1.41726 1.41703 1.03541 0.85131 0.78106 0.78452 0.78479 1.19077 1.19222 1.18076 1.21114 0.99031 1.06789 0.97548 1.20897 0.99509 0.98443 0.91473 1.21097 0.94081 0.97926 1.00599 1.20065 0.93908 0.96032 1.00392 1.20882 1.00143 0.93003 1.03128 0.89902 0.91289 0.90683 0.84800 0.85233 0.84748 0.84548 0.73120 0.80723 0.83742 0.90539 0.88000 0.86423 0.85518 0.89781 0.91811 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.61 71.24 0.68 -0.94 16 2 C -0.10 -2.06 5.88 -19.86 -0.12 -2.18 16 3 C -0.13 -2.67 9.70 22.27 0.22 -2.46 16 4 C -0.12 -2.57 9.70 22.27 0.22 -2.35 16 5 C -0.08 -1.73 4.37 -19.86 -0.09 -1.81 16 6 C -0.09 -1.25 5.83 29.10 0.17 -1.08 16 7 C 0.50 12.35 7.67 87.66 0.67 13.03 16 8 O -0.57 -20.64 13.47 -3.06 -0.04 -20.68 16 9 N -0.65 -13.97 5.34 -303.38 -1.62 -15.59 16 10 C 0.07 2.27 6.30 38.16 0.24 2.51 16 11 C -0.08 -2.22 9.96 22.38 0.22 -2.00 16 12 C -0.17 -6.14 9.99 22.37 0.22 -5.92 16 13 C 0.11 5.31 6.65 22.59 0.15 5.46 16 14 O -0.24 -13.29 8.58 -22.89 -0.20 -13.49 16 15 C -0.40 -24.49 9.94 67.91 0.68 -23.82 16 16 H 0.07 4.79 5.43 -2.91 -0.02 4.77 16 17 C 0.01 0.39 5.49 84.82 0.47 0.86 16 18 N -0.93 -57.05 13.96 21.61 0.30 -56.75 16 19 Si 0.98 45.99 28.62 68.60 1.96 47.96 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 23 C -0.22 -10.90 9.16 22.37 0.20 -10.69 16 24 C -0.08 -3.42 8.69 22.38 0.19 -3.22 16 25 C -0.12 -2.53 9.36 22.27 0.21 -2.33 16 26 C -0.10 -2.14 5.88 -19.86 -0.12 -2.26 16 27 C -0.12 -1.76 9.60 71.24 0.68 -1.07 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.90 8.09 -2.38 -0.02 0.88 16 30 H 0.07 0.96 5.94 -2.39 -0.01 0.95 16 31 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.13 1.11 8.09 -2.39 -0.02 1.09 16 34 H 0.14 1.10 8.09 -2.39 -0.02 1.08 16 35 H 0.43 4.83 8.82 -92.71 -0.82 4.01 16 36 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.14 4.63 8.06 -2.91 -0.02 4.60 16 38 H 0.29 16.01 8.31 -92.70 -0.77 15.24 16 39 H 0.10 5.53 5.63 -2.91 -0.02 5.51 16 40 H 0.12 5.04 6.23 -2.91 -0.02 5.02 16 41 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 44 H 0.08 1.04 5.94 -2.39 -0.01 1.03 16 Total: -1.00 -81.06 370.29 5.54 -75.53 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.22 Total: 23.30 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 4.91 Total: -40.27 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -1.32 Total: -72.34 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.24 Total: -34.17 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.96 Total: 47.96 kcal Total: -81.06 5.54 -75.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072576370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.384 kcal (2) G-P(sol) polarization free energy of solvation -81.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds