Wall clock time and date at job start Tue Mar 31 2020 14:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38244 * 119.99643 * 2 1 4 4 C 1.38239 * 119.99582 * 180.02562 * 3 2 1 5 5 C 1.38230 * 120.00418 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00330 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47246 * 89.99828 * 6 5 4 8 8 N 1.46503 * 109.47130 * 180.02562 * 7 6 5 9 9 C 1.34779 * 119.99928 * 180.02562 * 8 7 6 10 10 O 1.21587 * 119.99992 * 359.97438 * 9 8 7 11 11 C 1.47537 * 120.00033 * 179.97438 * 9 8 7 12 12 C 1.39670 * 120.19258 * 0.02562 * 11 9 8 13 13 C 1.37830 * 119.91307 * 180.02562 * 12 11 9 14 14 C 1.38573 * 120.32694 * 359.97438 * 13 12 11 15 15 C 1.38023 * 120.40002 * 0.02562 * 14 13 12 16 16 C 1.38835 * 120.07436 * 359.67942 * 15 14 13 17 17 O 1.35514 * 120.16728 * 180.29778 * 16 15 14 18 18 C 1.34819 * 116.99817 * 354.39607 * 17 16 15 19 19 H 1.08005 * 119.99823 * 5.06826 * 18 17 16 20 20 C 1.38694 * 120.00246 * 185.06135 * 18 17 16 21 21 N 1.31519 * 120.00068 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00244 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46916 * 90.00008 * 22 20 18 24 24 H 1.48494 * 109.47260 * 210.00148 * 22 20 18 25 25 H 1.48500 * 109.46774 * 330.00451 * 22 20 18 26 26 C 1.38243 * 119.99814 * 0.25276 * 5 4 3 27 27 C 1.38233 * 120.00454 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47508 * 90.00484 * 1 2 3 29 29 H 1.09005 * 109.47266 * 210.00226 * 1 2 3 30 30 H 1.09001 * 109.47450 * 329.99776 * 1 2 3 31 31 H 1.07995 * 120.00092 * 359.97308 * 3 2 1 32 32 H 1.08002 * 119.99425 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47214 * 210.00091 * 6 5 4 34 34 H 1.09002 * 109.46949 * 329.99971 * 6 5 4 35 35 H 1.09000 * 109.47228 * 300.00254 * 7 6 5 36 36 H 1.08998 * 109.47278 * 59.99740 * 7 6 5 37 37 H 0.96994 * 120.00300 * 359.97438 * 8 7 6 38 38 H 1.07996 * 120.04446 * 359.97438 * 12 11 9 39 39 H 1.08004 * 119.83455 * 179.97438 * 13 12 11 40 40 H 1.08003 * 119.79878 * 179.97438 * 14 13 12 41 41 H 1.08004 * 119.96381 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00467 * 180.02562 * 21 20 18 43 43 H 1.08000 * 119.99569 * 179.72553 * 26 5 4 44 44 H 1.08002 * 120.00061 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7787 0.0002 -0.0017 7 6 6.2898 0.0009 1.4403 8 7 7.7548 0.0015 1.4392 9 6 8.4296 0.0017 2.6059 10 8 7.8225 0.0017 3.6593 11 6 9.9050 0.0017 2.6047 12 6 10.6065 0.0022 1.3969 13 6 11.9848 0.0017 1.4026 14 6 12.6796 0.0013 2.6016 15 6 11.9997 0.0009 3.8028 16 6 10.6115 0.0075 3.8165 17 8 9.9421 0.0132 4.9948 18 6 10.6787 -0.1053 6.1177 19 1 11.7570 -0.1166 6.0575 20 6 10.0519 -0.2125 7.3502 21 7 8.7388 -0.1990 7.4236 22 14 11.0726 -0.3759 8.9062 23 1 11.3646 0.9744 9.4507 24 1 10.3169 -1.1630 9.9135 25 1 12.3476 -1.0690 8.5912 26 6 3.5805 -1.1970 -0.0053 27 6 2.1982 -1.1971 0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6581 2.1325 -0.0004 32 1 4.1204 2.1326 -0.0010 33 1 6.1416 -0.8900 -0.5154 34 1 6.1416 0.8900 -0.5162 35 1 5.9268 0.8911 1.9541 36 1 5.9269 -0.8888 1.9549 37 1 8.2392 0.0011 0.5988 38 1 10.0696 0.0020 0.4599 39 1 12.5259 0.0016 0.4679 40 1 13.7596 0.0005 2.5960 41 1 12.5483 0.0001 4.7331 42 1 8.3004 -0.2736 8.2856 43 1 4.1206 -2.1323 -0.0098 44 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116209186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:39 Heat of formation + Delta-G solvation = -20.459223 kcal Electronic energy + Delta-G solvation = -25740.279951 eV Core-core repulsion = 22008.869869 eV Total energy + Delta-G solvation = -3731.410082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.74855 -39.43752 -38.04465 -36.32252 -35.29658 -33.25773 -32.32301 -31.04333 -30.91963 -29.56733 -28.90046 -26.31438 -25.33463 -23.49784 -22.85028 -22.37670 -21.27341 -20.76076 -19.81753 -18.02845 -17.54425 -16.32366 -15.97872 -15.85323 -15.51234 -15.06067 -14.71608 -14.64228 -14.23037 -14.15102 -13.93849 -13.78069 -13.71117 -13.52668 -12.95240 -12.89497 -12.75102 -12.51106 -12.39867 -12.30417 -11.70466 -11.55307 -11.44379 -11.25559 -11.20330 -11.10733 -10.96107 -10.87837 -10.76825 -10.44998 -9.55441 -9.03855 -8.86752 -8.85061 -8.59201 -8.52277 -8.25171 -7.29443 -6.42702 -4.02841 1.18409 1.29248 1.73541 2.33183 3.12652 3.13863 3.18589 3.54100 3.78231 3.78613 3.94830 4.63442 4.66435 4.66630 4.86745 4.89683 4.95921 5.07658 5.10740 5.19575 5.26555 5.33628 5.36723 5.48781 5.50801 5.55997 5.57023 5.62985 5.74435 5.89743 5.97573 6.02704 6.04629 6.13311 6.22898 6.29654 6.45807 6.53020 6.57700 6.70662 6.88693 6.92694 6.98680 7.07458 7.25325 7.30667 7.70868 7.93754 8.15693 8.96740 9.13554 9.69427 10.71087 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.002620 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.811116 B =10682.995065 C =12481.863557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.110 4.110 5 C -0.082 4.082 6 C -0.091 4.091 7 C 0.131 3.869 8 N -0.746 5.746 9 C 0.553 3.447 10 O -0.500 6.500 11 C -0.227 4.227 12 C -0.039 4.039 13 C -0.231 4.231 14 C -0.051 4.051 15 C -0.238 4.238 16 C 0.189 3.811 17 O -0.124 6.124 18 C -0.404 4.404 19 H 0.094 0.906 20 C 0.044 3.956 21 N -0.832 5.832 22 Si 0.941 3.059 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.266 1.266 26 C -0.110 4.110 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.391 0.609 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.271 0.729 43 H 0.123 0.877 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 0.206 -16.952 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.128 4.128 5 C -0.082 4.082 6 C -0.128 4.128 7 C 0.007 3.993 8 N -0.402 5.402 9 C 0.342 3.658 10 O -0.374 6.374 11 C -0.232 4.232 12 C -0.057 4.057 13 C -0.250 4.250 14 C -0.070 4.070 15 C -0.257 4.257 16 C 0.129 3.871 17 O -0.022 6.022 18 C -0.480 4.480 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.765 3.235 23 H -0.198 1.198 24 H -0.201 1.201 25 H -0.191 1.191 26 C -0.128 4.128 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.226 0.774 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.141 0.859 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.157 0.207 -15.845 18.301 hybrid contribution 0.882 -0.068 0.303 0.935 sum -8.275 0.139 -15.542 17.608 Atomic orbital electron populations 1.20783 0.91364 1.02788 1.02113 1.19924 0.96018 0.93309 1.00079 1.21015 0.94167 0.97490 1.01092 1.21072 0.94170 0.97696 0.99821 1.19699 0.95016 0.93319 1.00215 1.20792 0.91411 1.03433 0.97204 1.21135 0.80509 1.02589 0.95077 1.45898 1.06179 1.79349 1.08749 1.18239 0.87410 0.76821 0.83293 1.90952 1.69441 1.46873 1.30172 1.18865 0.91851 1.20546 0.91896 1.20759 0.94216 0.95637 0.95135 1.20460 0.93768 1.13566 0.97246 1.20893 0.98668 0.95161 0.92260 1.21158 0.93785 1.11959 0.98820 1.19284 0.90208 0.90697 0.86920 1.84177 1.34189 1.73476 1.10329 1.21498 0.91171 1.52789 0.82523 0.88875 1.25388 0.96110 0.96196 0.98651 1.70130 1.07794 1.42468 1.25977 0.85728 0.79075 0.78746 0.79957 1.19752 1.20136 1.19068 1.21077 0.94171 0.97696 0.99810 1.21012 0.94169 0.97494 1.01081 0.91350 0.91591 0.91594 0.86164 0.85920 0.90386 0.90391 0.91740 0.91722 0.77423 0.87050 0.87294 0.87203 0.85087 0.91865 0.85914 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 2 C -0.09 -0.92 5.88 -104.63 -0.62 -1.53 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 4 C -0.11 -1.17 9.70 -39.58 -0.38 -1.56 16 5 C -0.08 -0.91 5.13 -104.62 -0.54 -1.44 16 6 C -0.09 -0.95 5.46 -27.89 -0.15 -1.10 16 7 C 0.13 1.93 5.66 -4.04 -0.02 1.91 16 8 N -0.75 -12.11 5.51 -61.35 -0.34 -12.45 16 9 C 0.55 12.36 7.76 -12.47 -0.10 12.26 16 10 O -0.50 -14.01 15.17 -16.57 -0.25 -14.26 16 11 C -0.23 -4.97 5.89 -104.81 -0.62 -5.59 16 12 C -0.04 -0.66 9.54 -39.20 -0.37 -1.04 16 13 C -0.23 -3.79 10.02 -39.61 -0.40 -4.19 16 14 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 15 C -0.24 -5.15 9.16 -39.44 -0.36 -5.52 16 16 C 0.19 4.74 6.66 -38.60 -0.26 4.48 16 17 O -0.12 -3.69 7.84 -21.05 -0.16 -3.86 16 18 C -0.40 -11.54 9.49 30.90 0.29 -11.25 16 19 H 0.09 2.41 5.21 -52.48 -0.27 2.14 16 20 C 0.04 1.25 5.49 -17.52 -0.10 1.15 16 21 N -0.83 -25.38 13.67 55.48 0.76 -24.62 16 22 Si 0.94 20.70 29.55 -169.99 -5.02 15.67 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 C -0.11 -1.17 9.70 -39.58 -0.38 -1.56 16 27 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 30 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.39 4.95 6.50 -40.82 -0.27 4.68 16 38 H 0.11 1.45 6.40 -52.49 -0.34 1.11 16 39 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 40 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 41 H 0.13 2.80 5.64 -52.48 -0.30 2.50 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -35.68 375.22 -9.96 -45.64 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.79 Total: 8.13 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -4.81 Total: -19.91 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.42 Total: -37.07 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.42 Total: -18.12 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.68 -9.96 -45.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116209186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.181 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds