Wall clock time and date at job start Tue Mar 31 2020 14:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38244 * 119.99643 * 2 1 4 4 C 1.38239 * 119.99582 * 180.02562 * 3 2 1 5 5 C 1.38230 * 120.00418 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00330 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47246 * 89.99828 * 6 5 4 8 8 N 1.46503 * 109.47130 * 180.02562 * 7 6 5 9 9 C 1.34779 * 119.99928 * 180.02562 * 8 7 6 10 10 O 1.21587 * 119.99992 * 359.97438 * 9 8 7 11 11 C 1.47537 * 120.00033 * 179.97438 * 9 8 7 12 12 C 1.39670 * 120.19258 * 0.02562 * 11 9 8 13 13 C 1.37830 * 119.91307 * 180.02562 * 12 11 9 14 14 C 1.38573 * 120.32694 * 359.97438 * 13 12 11 15 15 C 1.38023 * 120.40002 * 0.02562 * 14 13 12 16 16 C 1.38835 * 120.07436 * 359.67942 * 15 14 13 17 17 O 1.35514 * 120.16728 * 180.29778 * 16 15 14 18 18 C 1.34819 * 116.99817 * 354.39607 * 17 16 15 19 19 H 1.08005 * 119.99823 * 5.06826 * 18 17 16 20 20 C 1.38694 * 120.00246 * 185.06135 * 18 17 16 21 21 N 1.31519 * 120.00068 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00244 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46916 * 90.00008 * 22 20 18 24 24 H 1.48494 * 109.47260 * 210.00148 * 22 20 18 25 25 H 1.48500 * 109.46774 * 330.00451 * 22 20 18 26 26 C 1.38243 * 119.99814 * 0.25276 * 5 4 3 27 27 C 1.38233 * 120.00454 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47508 * 90.00484 * 1 2 3 29 29 H 1.09005 * 109.47266 * 210.00226 * 1 2 3 30 30 H 1.09001 * 109.47450 * 329.99776 * 1 2 3 31 31 H 1.07995 * 120.00092 * 359.97308 * 3 2 1 32 32 H 1.08002 * 119.99425 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47214 * 210.00091 * 6 5 4 34 34 H 1.09002 * 109.46949 * 329.99971 * 6 5 4 35 35 H 1.09000 * 109.47228 * 300.00254 * 7 6 5 36 36 H 1.08998 * 109.47278 * 59.99740 * 7 6 5 37 37 H 0.96994 * 120.00300 * 359.97438 * 8 7 6 38 38 H 1.07996 * 120.04446 * 359.97438 * 12 11 9 39 39 H 1.08004 * 119.83455 * 179.97438 * 13 12 11 40 40 H 1.08003 * 119.79878 * 179.97438 * 14 13 12 41 41 H 1.08004 * 119.96381 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00467 * 180.02562 * 21 20 18 43 43 H 1.08000 * 119.99569 * 179.72553 * 26 5 4 44 44 H 1.08002 * 120.00061 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7787 0.0002 -0.0017 7 6 6.2898 0.0009 1.4403 8 7 7.7548 0.0015 1.4392 9 6 8.4296 0.0017 2.6059 10 8 7.8225 0.0017 3.6593 11 6 9.9050 0.0017 2.6047 12 6 10.6065 0.0022 1.3969 13 6 11.9848 0.0017 1.4026 14 6 12.6796 0.0013 2.6016 15 6 11.9997 0.0009 3.8028 16 6 10.6115 0.0075 3.8165 17 8 9.9421 0.0132 4.9948 18 6 10.6787 -0.1053 6.1177 19 1 11.7570 -0.1166 6.0575 20 6 10.0519 -0.2125 7.3502 21 7 8.7388 -0.1990 7.4236 22 14 11.0726 -0.3759 8.9062 23 1 11.3646 0.9744 9.4507 24 1 10.3169 -1.1630 9.9135 25 1 12.3476 -1.0690 8.5912 26 6 3.5805 -1.1970 -0.0053 27 6 2.1982 -1.1971 0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5139 31 1 1.6581 2.1325 -0.0004 32 1 4.1204 2.1326 -0.0010 33 1 6.1416 -0.8900 -0.5154 34 1 6.1416 0.8900 -0.5162 35 1 5.9268 0.8911 1.9541 36 1 5.9269 -0.8888 1.9549 37 1 8.2392 0.0011 0.5988 38 1 10.0696 0.0020 0.4599 39 1 12.5259 0.0016 0.4679 40 1 13.7596 0.0005 2.5960 41 1 12.5483 0.0001 4.7331 42 1 8.3004 -0.2736 8.2856 43 1 4.1206 -2.1323 -0.0098 44 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116209186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:38 Heat of formation + Delta-G solvation = -42.670405 kcal Electronic energy + Delta-G solvation = -25741.243100 eV Core-core repulsion = 22008.869869 eV Total energy + Delta-G solvation = -3732.373231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29122 -40.42639 -39.74325 -38.02140 -36.57231 -34.44976 -34.29191 -32.33563 -31.81092 -30.67551 -30.53928 -27.52999 -27.07801 -24.79991 -23.72649 -23.62571 -22.86425 -21.75461 -21.28900 -19.84709 -19.23501 -17.87246 -17.22648 -16.81507 -16.73297 -16.33878 -16.09465 -16.02772 -15.79252 -15.71233 -15.42064 -15.27280 -14.63468 -14.50139 -14.35300 -14.25057 -14.20092 -13.62820 -13.54805 -13.37240 -13.12250 -12.98987 -12.69132 -12.53093 -12.45668 -12.32434 -12.30760 -12.12485 -11.97763 -11.76167 -11.42625 -10.83529 -10.63596 -10.12619 -9.82685 -9.76882 -9.39995 -9.03067 -8.44553 -6.15778 0.13143 0.38484 0.50408 0.73607 1.31811 1.43634 1.51226 2.10160 2.15763 2.26679 2.83548 2.88018 3.23212 3.47693 3.84673 3.87568 3.98554 4.07415 4.13033 4.13915 4.14496 4.16968 4.30521 4.48767 4.52480 4.56452 4.60004 4.66221 4.81251 4.83032 4.93910 4.94235 4.98929 5.06026 5.08731 5.15548 5.21426 5.30297 5.48752 5.49356 5.54992 5.62063 5.70576 5.70606 5.71305 5.96235 6.13570 6.18196 6.71460 6.94636 7.49293 7.80933 8.76090 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.002620 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.811116 B =10682.995065 C =12481.863557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.132 4.132 4 C -0.122 4.122 5 C -0.100 4.100 6 C -0.073 4.073 7 C 0.132 3.868 8 N -0.716 5.716 9 C 0.546 3.454 10 O -0.571 6.571 11 C -0.245 4.245 12 C -0.029 4.029 13 C -0.200 4.200 14 C -0.040 4.040 15 C -0.258 4.258 16 C 0.147 3.853 17 O -0.190 6.190 18 C -0.428 4.428 19 H 0.107 0.893 20 C -0.024 4.024 21 N -0.906 5.906 22 Si 1.023 2.977 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.247 1.247 26 C -0.122 4.122 27 C -0.132 4.132 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.414 0.586 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.154 0.846 41 H 0.123 0.877 42 H 0.270 0.730 43 H 0.131 0.869 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.030 0.145 -20.954 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.101 4.101 6 C -0.111 4.111 7 C 0.009 3.991 8 N -0.372 5.372 9 C 0.336 3.664 10 O -0.451 6.451 11 C -0.250 4.250 12 C -0.047 4.047 13 C -0.218 4.218 14 C -0.058 4.058 15 C -0.278 4.278 16 C 0.092 3.908 17 O -0.092 6.092 18 C -0.503 4.503 19 H 0.125 0.875 20 C -0.223 4.223 21 N -0.542 5.542 22 Si 0.841 3.159 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.171 1.171 26 C -0.140 4.140 27 C -0.150 4.150 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.252 0.748 38 H 0.180 0.820 39 H 0.183 0.817 40 H 0.172 0.828 41 H 0.140 0.860 42 H 0.079 0.921 43 H 0.149 0.851 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.914 0.150 -19.986 21.149 hybrid contribution 0.288 -0.032 1.038 1.078 sum -6.625 0.118 -18.948 20.073 Atomic orbital electron populations 1.20829 0.89564 1.03412 1.03119 1.20305 0.97529 0.93155 0.99115 1.21310 0.94218 0.98470 1.00966 1.21315 0.94787 0.98066 0.99842 1.19819 0.95289 0.93689 1.01297 1.20678 0.91118 1.05410 0.93848 1.21183 0.79350 1.00544 0.98070 1.45610 1.06866 1.76804 1.07919 1.18596 0.88073 0.76017 0.83760 1.90933 1.70753 1.50285 1.33089 1.19310 0.91977 1.20805 0.92907 1.21330 0.95137 0.93307 0.94942 1.21193 0.93453 1.08360 0.98836 1.21443 1.00966 0.92377 0.91042 1.21302 0.92541 1.13284 1.00627 1.20121 0.92217 0.91502 0.86977 1.84183 1.35729 1.77624 1.11686 1.22046 0.91972 1.53100 0.83219 0.87548 1.26781 0.97389 0.95596 1.02499 1.70330 1.10370 1.46810 1.26713 0.84553 0.77570 0.79227 0.74547 1.18620 1.19769 1.17053 1.21318 0.94790 0.98065 0.99853 1.21306 0.94221 0.98477 1.00975 0.90044 0.90996 0.90984 0.84550 0.85051 0.88364 0.88328 0.93894 0.93957 0.74768 0.81952 0.81702 0.82841 0.85960 0.92063 0.85077 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.23 0.71 -0.75 16 2 C -0.10 -1.89 5.88 -19.87 -0.12 -2.01 16 3 C -0.13 -2.55 9.70 22.27 0.22 -2.34 16 4 C -0.12 -2.54 9.70 22.27 0.22 -2.33 16 5 C -0.10 -2.15 5.13 -19.87 -0.10 -2.25 16 6 C -0.07 -1.41 5.46 29.85 0.16 -1.24 16 7 C 0.13 3.97 5.66 86.38 0.49 4.46 16 8 N -0.72 -22.73 5.51 -466.27 -2.57 -25.30 16 9 C 0.55 25.25 7.76 86.70 0.67 25.92 16 10 O -0.57 -34.70 15.17 16.91 0.26 -34.44 16 11 C -0.25 -10.73 5.89 -19.98 -0.12 -10.85 16 12 C -0.03 -0.86 9.54 22.52 0.21 -0.64 16 13 C -0.20 -5.26 10.02 22.25 0.22 -5.03 16 14 C -0.04 -1.25 10.03 22.30 0.22 -1.02 16 15 C -0.26 -11.12 9.16 22.36 0.20 -10.92 16 16 C 0.15 7.68 6.66 22.91 0.15 7.83 16 17 O -0.19 -12.26 7.84 0.86 0.01 -12.26 16 18 C -0.43 -26.22 9.49 67.93 0.64 -25.58 16 19 H 0.11 5.84 5.21 -2.91 -0.02 5.82 16 20 C -0.02 -1.42 5.49 84.85 0.47 -0.96 16 21 N -0.91 -60.23 13.67 21.62 0.30 -59.93 16 22 Si 1.02 44.80 29.55 68.60 2.03 46.83 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 26 C -0.12 -2.56 9.70 22.27 0.22 -2.34 16 27 C -0.13 -2.56 9.70 22.27 0.22 -2.35 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.85 8.09 -2.38 -0.02 0.83 16 30 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 31 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.10 1.51 8.08 -2.39 -0.02 1.49 16 34 H 0.10 1.51 8.09 -2.39 -0.02 1.49 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.41 9.04 6.50 -92.71 -0.60 8.43 16 38 H 0.16 3.11 6.40 -2.91 -0.02 3.09 16 39 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 41 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 42 H 0.27 16.44 8.31 -92.71 -0.77 15.67 16 43 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 44 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -91.01 375.22 5.13 -85.87 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: 0.42 Total: 31.63 kcal Atomic # 6 Polarization: -37.10 SS G_CDS: 4.70 Total: -32.40 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -2.27 Total: -85.23 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: 0.26 Total: -46.70 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -91.01 5.13 -85.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116209186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.203 kcal (2) G-P(sol) polarization free energy of solvation -91.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds