Wall clock time and date at job start Tue Mar 31 2020 14:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38307 * 119.96282 * 2 1 4 4 C 1.38269 * 120.14955 * 180.02562 * 3 2 1 5 5 C 1.38129 * 120.07444 * 359.74963 * 4 3 2 6 6 C 1.50695 * 120.03812 * 180.27572 * 5 4 3 7 7 C 1.38892 * 119.92265 * 0.52304 * 5 4 3 8 8 N 1.39669 * 120.07428 * 179.74798 * 7 5 4 9 9 C 1.46508 * 120.00142 * 96.04043 * 8 7 5 10 10 C 1.52994 * 109.46771 * 305.72493 * 9 8 7 11 11 C 1.52999 * 109.46667 * 65.72257 * 9 8 7 12 12 S 1.65604 * 120.00214 * 276.04022 * 8 7 5 13 13 O 1.42092 * 104.27488 * 29.99326 * 12 8 7 14 14 O 1.42102 * 104.27588 * 157.85364 * 12 8 7 15 15 C 1.81408 * 104.44786 * 273.92173 * 12 8 7 16 16 C 1.53007 * 109.46785 * 184.93859 * 15 12 8 17 17 C 1.50695 * 109.46629 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00405 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99582 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00355 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99700 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47474 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46928 * 120.00374 * 21 19 17 24 24 H 1.48503 * 109.47067 * 239.99961 * 21 19 17 25 25 C 1.38087 * 119.96071 * 180.02562 * 2 1 3 26 26 H 1.09007 * 109.46513 * 269.97533 * 1 2 3 27 27 H 1.08999 * 109.47265 * 29.97282 * 1 2 3 28 28 H 1.08999 * 109.47324 * 149.97646 * 1 2 3 29 29 H 1.07990 * 119.92581 * 0.02562 * 3 2 1 30 30 H 1.07993 * 119.96237 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.47212 * 276.04661 * 6 5 4 32 32 H 1.08997 * 109.47594 * 36.05188 * 6 5 4 33 33 H 1.09006 * 109.46939 * 156.05359 * 6 5 4 34 34 H 1.08998 * 109.47124 * 185.72302 * 9 8 7 35 35 H 1.09001 * 109.47165 * 173.12931 * 10 9 8 36 36 H 1.08996 * 109.47486 * 293.13548 * 10 9 8 37 37 H 1.09008 * 109.47355 * 53.13538 * 10 9 8 38 38 H 1.08998 * 109.47385 * 299.99885 * 11 9 8 39 39 H 1.09002 * 109.47229 * 60.00635 * 11 9 8 40 40 H 1.09001 * 109.46530 * 180.02562 * 11 9 8 41 41 H 1.08995 * 109.47294 * 304.93758 * 15 12 8 42 42 H 1.09003 * 109.46921 * 64.94195 * 15 12 8 43 43 H 1.08995 * 109.47122 * 300.00005 * 16 15 12 44 44 H 1.09004 * 109.46738 * 60.00073 * 16 15 12 45 45 H 0.96996 * 119.99972 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.04101 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5805 1.2027 -0.0005 5 6 4.2766 0.0097 0.0042 6 6 5.7835 0.0156 0.0098 7 6 3.5860 -1.1954 -0.0016 8 7 4.2867 -2.4036 -0.0022 9 6 4.5340 -3.1076 1.2586 10 6 5.2212 -2.1611 2.2448 11 6 3.2037 -3.5804 1.8481 12 16 4.8379 -3.0405 -1.4280 13 8 5.0848 -1.9055 -2.2465 14 8 5.8947 -3.9073 -1.0393 15 6 3.4351 -3.9951 -2.0697 16 6 3.8618 -4.7398 -3.3363 17 6 2.6963 -5.5322 -3.8697 18 1 1.7464 -5.5076 -3.3564 19 6 2.8426 -6.2888 -5.0131 20 7 3.9995 -6.3193 -5.6379 21 14 1.3977 -7.2706 -5.6746 22 1 0.2177 -7.0680 -4.7960 23 1 1.0752 -6.8112 -7.0495 24 1 1.7513 -8.7126 -5.7048 25 6 2.1966 -1.1963 -0.0005 26 1 -0.3632 -0.0004 1.0278 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6560 2.1324 0.0004 30 1 4.1168 2.1401 -0.0010 31 1 6.1503 0.1235 -1.0109 32 1 6.1414 0.8488 0.6145 33 1 6.1489 -0.9216 0.4300 34 1 5.1762 -3.9688 1.0740 35 1 5.2953 -2.6433 3.2196 36 1 6.2203 -1.9206 1.8815 37 1 4.6375 -1.2451 2.3361 38 1 2.5616 -2.7192 2.0328 39 1 2.7141 -4.2548 1.1455 40 1 3.3877 -4.1038 2.7864 41 1 3.1104 -4.7139 -1.3175 42 1 2.6130 -3.3191 -2.3051 43 1 4.1865 -4.0209 -4.0885 44 1 4.6839 -5.4157 -3.1008 45 1 4.1023 -6.8512 -6.4424 46 1 1.6567 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118432973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:56 Heat of formation + Delta-G solvation = -62.053562 kcal Electronic energy + Delta-G solvation = -27037.428627 eV Core-core repulsion = 23439.658830 eV Total energy + Delta-G solvation = -3597.769797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.06332 -37.16230 -36.53731 -35.43489 -33.92416 -33.67494 -32.00464 -31.16504 -29.47723 -29.00800 -27.16713 -25.59256 -24.81881 -22.93461 -21.83943 -21.32412 -20.43158 -18.48731 -17.70357 -16.57667 -16.45856 -16.04489 -15.63871 -15.13348 -15.03152 -14.56184 -14.30345 -13.98762 -13.78221 -13.50456 -13.43251 -13.17789 -13.10014 -12.74668 -12.53111 -12.41290 -12.16566 -12.07433 -11.82142 -11.76098 -11.62053 -11.55426 -11.43910 -11.34751 -11.17907 -11.10140 -11.02174 -10.95236 -10.65410 -10.40276 -10.38379 -9.79223 -9.38558 -8.99952 -8.72888 -8.51086 -8.34001 -6.12830 -4.18326 0.66343 1.31222 1.37604 2.94967 3.24916 3.32124 3.35543 3.63965 4.26234 4.37906 4.57738 4.77507 4.79260 4.83082 5.00311 5.04523 5.12599 5.16501 5.18652 5.22460 5.41257 5.48579 5.49790 5.52546 5.57092 5.65713 5.72117 5.73998 5.76260 5.76661 5.81704 5.86934 5.99934 6.06654 6.18186 6.28779 6.32614 6.38320 6.48243 6.50866 6.62664 6.73395 7.20338 7.28976 7.35372 7.80333 8.17030 8.85139 9.46447 10.98346 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.004273 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.373670 B = 6551.575106 C = 7277.131450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.113 4.113 4 C -0.115 4.115 5 C -0.062 4.062 6 C -0.128 4.128 7 C 0.150 3.850 8 N -0.956 5.956 9 C 0.137 3.863 10 C -0.159 4.159 11 C -0.168 4.168 12 S 2.580 3.420 13 O -0.953 6.953 14 O -0.960 6.960 15 C -0.588 4.588 16 C 0.029 3.971 17 C -0.518 4.518 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.114 4.114 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.031 0.969 44 H 0.034 0.966 45 H 0.265 0.735 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.149 13.194 17.049 21.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.131 4.131 4 C -0.134 4.134 5 C -0.065 4.065 6 C -0.185 4.185 7 C 0.057 3.943 8 N -0.785 5.785 9 C 0.033 3.967 10 C -0.217 4.217 11 C -0.227 4.227 12 S 2.681 3.319 13 O -0.943 6.943 14 O -0.951 6.951 15 C -0.721 4.721 16 C -0.010 4.010 17 C -0.558 4.558 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.134 4.134 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.118 13.224 16.574 21.309 hybrid contribution -1.431 -0.787 -0.402 1.682 sum -3.549 12.437 16.173 20.708 Atomic orbital electron populations 1.20776 0.91079 1.02998 1.02100 1.19741 0.96025 0.92691 1.00659 1.21022 0.94080 0.97424 1.00603 1.20884 0.94016 0.97176 1.01320 1.20106 0.96455 0.92263 0.97656 1.21027 0.91224 1.02817 1.03388 1.16961 0.89871 0.84632 1.02854 1.55694 1.71079 1.29437 1.22332 1.21013 0.97174 0.95367 0.83158 1.22206 1.00955 1.00015 0.98573 1.22287 0.97424 1.01730 1.01232 1.06136 0.77641 0.75190 0.72889 1.93546 1.84503 1.49111 1.67144 1.93530 1.52141 1.68212 1.81188 1.30488 1.17388 1.12880 1.11353 1.18962 0.98611 0.95370 0.88036 1.21026 0.96751 1.27973 1.10038 0.91989 1.25066 0.96120 0.96664 0.96600 1.69963 1.23515 1.40520 1.18863 0.86422 0.82252 0.79770 0.78904 1.19633 1.20768 1.20763 1.21375 0.93158 0.98308 1.00580 0.91383 0.91555 0.91342 0.86089 0.85850 0.89875 0.91705 0.91042 0.87327 0.91646 0.91882 0.91889 0.91840 0.91948 0.91490 0.86268 0.86206 0.95062 0.94772 0.92571 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.09 -1.02 5.88 -104.65 -0.62 -1.64 16 3 C -0.11 -1.22 9.70 -39.54 -0.38 -1.60 16 4 C -0.12 -1.34 9.72 -39.61 -0.38 -1.72 16 5 C -0.06 -0.84 4.88 -104.42 -0.51 -1.35 16 6 C -0.13 -1.66 8.81 36.00 0.32 -1.34 16 7 C 0.15 2.10 3.46 -83.79 -0.29 1.81 16 8 N -0.96 -14.01 1.67 -52.16 -0.09 -14.09 16 9 C 0.14 1.69 3.24 -67.93 -0.22 1.47 16 10 C -0.16 -1.66 7.94 37.15 0.30 -1.37 16 11 C -0.17 -1.72 8.79 37.16 0.33 -1.39 16 12 S 2.58 48.92 5.39 -107.50 -0.58 48.34 16 13 O -0.95 -20.27 15.96 -57.54 -0.92 -21.19 16 14 O -0.96 -20.19 16.41 -57.54 -0.94 -21.14 16 15 C -0.59 -11.74 6.12 37.16 0.23 -11.51 16 16 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 17 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 21 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 C -0.11 -1.44 8.17 -39.38 -0.32 -1.77 16 26 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.08 1.21 7.78 -51.93 -0.40 0.81 16 32 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 33 H 0.07 0.94 4.43 -51.93 -0.23 0.71 16 34 H 0.11 1.43 6.68 -51.93 -0.35 1.08 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 37 H 0.06 0.66 6.80 -51.92 -0.35 0.31 16 38 H 0.06 0.63 6.75 -51.93 -0.35 0.28 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 42 H 0.12 2.22 8.14 -51.92 -0.42 1.80 16 43 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 46 H 0.13 1.49 7.74 -52.49 -0.41 1.08 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -33.79 378.05 -10.32 -44.11 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.46 Total: 1.55 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: -1.75 Total: -33.62 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.65 Total: -40.00 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -1.86 Total: -42.33 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 48.92 SS G_CDS: -0.58 Total: 48.34 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.79 -10.32 -44.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118432973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.946 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds