Wall clock time and date at job start Tue Mar 31 2020 14:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38307 * 119.96282 * 2 1 4 4 C 1.38269 * 120.14955 * 180.02562 * 3 2 1 5 5 C 1.38129 * 120.07444 * 359.74963 * 4 3 2 6 6 C 1.50695 * 120.03812 * 180.27572 * 5 4 3 7 7 C 1.38892 * 119.92265 * 0.52304 * 5 4 3 8 8 N 1.39669 * 120.07428 * 179.74798 * 7 5 4 9 9 C 1.46508 * 120.00142 * 96.04043 * 8 7 5 10 10 C 1.52994 * 109.46771 * 305.72493 * 9 8 7 11 11 C 1.52999 * 109.46667 * 65.72257 * 9 8 7 12 12 S 1.65604 * 120.00214 * 276.04022 * 8 7 5 13 13 O 1.42092 * 104.27488 * 29.99326 * 12 8 7 14 14 O 1.42102 * 104.27588 * 157.85364 * 12 8 7 15 15 C 1.81408 * 104.44786 * 273.92173 * 12 8 7 16 16 C 1.53007 * 109.46785 * 184.93859 * 15 12 8 17 17 C 1.50695 * 109.46629 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00405 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99582 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00355 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99700 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47474 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46928 * 120.00374 * 21 19 17 24 24 H 1.48503 * 109.47067 * 239.99961 * 21 19 17 25 25 C 1.38087 * 119.96071 * 180.02562 * 2 1 3 26 26 H 1.09007 * 109.46513 * 269.97533 * 1 2 3 27 27 H 1.08999 * 109.47265 * 29.97282 * 1 2 3 28 28 H 1.08999 * 109.47324 * 149.97646 * 1 2 3 29 29 H 1.07990 * 119.92581 * 0.02562 * 3 2 1 30 30 H 1.07993 * 119.96237 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.47212 * 276.04661 * 6 5 4 32 32 H 1.08997 * 109.47594 * 36.05188 * 6 5 4 33 33 H 1.09006 * 109.46939 * 156.05359 * 6 5 4 34 34 H 1.08998 * 109.47124 * 185.72302 * 9 8 7 35 35 H 1.09001 * 109.47165 * 173.12931 * 10 9 8 36 36 H 1.08996 * 109.47486 * 293.13548 * 10 9 8 37 37 H 1.09008 * 109.47355 * 53.13538 * 10 9 8 38 38 H 1.08998 * 109.47385 * 299.99885 * 11 9 8 39 39 H 1.09002 * 109.47229 * 60.00635 * 11 9 8 40 40 H 1.09001 * 109.46530 * 180.02562 * 11 9 8 41 41 H 1.08995 * 109.47294 * 304.93758 * 15 12 8 42 42 H 1.09003 * 109.46921 * 64.94195 * 15 12 8 43 43 H 1.08995 * 109.47122 * 300.00005 * 16 15 12 44 44 H 1.09004 * 109.46738 * 60.00073 * 16 15 12 45 45 H 0.96996 * 119.99972 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.04101 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5805 1.2027 -0.0005 5 6 4.2766 0.0097 0.0042 6 6 5.7835 0.0156 0.0098 7 6 3.5860 -1.1954 -0.0016 8 7 4.2867 -2.4036 -0.0022 9 6 4.5340 -3.1076 1.2586 10 6 5.2212 -2.1611 2.2448 11 6 3.2037 -3.5804 1.8481 12 16 4.8379 -3.0405 -1.4280 13 8 5.0848 -1.9055 -2.2465 14 8 5.8947 -3.9073 -1.0393 15 6 3.4351 -3.9951 -2.0697 16 6 3.8618 -4.7398 -3.3363 17 6 2.6963 -5.5322 -3.8697 18 1 1.7464 -5.5076 -3.3564 19 6 2.8426 -6.2888 -5.0131 20 7 3.9995 -6.3193 -5.6379 21 14 1.3977 -7.2706 -5.6746 22 1 0.2177 -7.0680 -4.7960 23 1 1.0752 -6.8112 -7.0495 24 1 1.7513 -8.7126 -5.7048 25 6 2.1966 -1.1963 -0.0005 26 1 -0.3632 -0.0004 1.0278 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3634 -0.8898 -0.5142 29 1 1.6560 2.1324 0.0004 30 1 4.1168 2.1401 -0.0010 31 1 6.1503 0.1235 -1.0109 32 1 6.1414 0.8488 0.6145 33 1 6.1489 -0.9216 0.4300 34 1 5.1762 -3.9688 1.0740 35 1 5.2953 -2.6433 3.2196 36 1 6.2203 -1.9206 1.8815 37 1 4.6375 -1.2451 2.3361 38 1 2.5616 -2.7192 2.0328 39 1 2.7141 -4.2548 1.1455 40 1 3.3877 -4.1038 2.7864 41 1 3.1104 -4.7139 -1.3175 42 1 2.6130 -3.3191 -2.3051 43 1 4.1865 -4.0209 -4.0885 44 1 4.6839 -5.4157 -3.1008 45 1 4.1023 -6.8512 -6.4424 46 1 1.6567 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118432973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:55 Heat of formation + Delta-G solvation = -82.180852 kcal Electronic energy + Delta-G solvation = -27038.301411 eV Core-core repulsion = 23439.658830 eV Total energy + Delta-G solvation = -3598.642581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.01853 -38.42594 -37.85851 -37.05790 -35.94885 -34.58920 -33.19006 -32.95007 -30.37533 -29.94114 -28.02265 -27.59144 -25.68788 -23.96820 -23.59214 -22.34154 -21.63257 -19.72422 -19.23600 -18.45400 -17.61936 -17.35044 -16.62375 -16.57792 -16.48181 -16.34710 -15.25397 -15.20310 -14.96942 -14.62050 -14.53145 -14.36203 -14.10109 -14.04522 -13.75429 -13.62177 -13.35996 -13.22963 -13.18981 -12.99417 -12.97927 -12.90982 -12.83737 -12.69759 -12.35582 -12.33568 -12.25532 -12.20787 -12.07970 -11.90727 -11.79522 -11.59374 -11.18468 -10.68453 -10.23932 -9.68951 -9.26636 -8.28585 -6.43274 -0.84965 0.36375 0.46771 1.39400 1.40391 1.53731 1.60439 2.36142 2.70699 2.75478 3.04734 3.13628 3.70796 3.93725 3.94072 3.98241 4.01064 4.15473 4.17499 4.25008 4.31603 4.32815 4.52452 4.61301 4.66070 4.71837 4.77610 4.82030 4.86404 4.89734 4.92251 4.96270 5.03343 5.15851 5.19130 5.20999 5.25288 5.35366 5.38675 5.41531 5.48286 5.61043 5.64974 5.70528 5.81215 6.02140 6.23381 6.69918 7.27199 8.84202 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.004273 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.373670 B = 6551.575106 C = 7277.131450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.110 4.110 4 C -0.118 4.118 5 C -0.083 4.083 6 C -0.129 4.129 7 C 0.127 3.873 8 N -0.940 5.940 9 C 0.126 3.874 10 C -0.153 4.153 11 C -0.164 4.164 12 S 2.597 3.403 13 O -0.981 6.981 14 O -0.987 6.987 15 C -0.586 4.586 16 C 0.024 3.976 17 C -0.538 4.538 18 H 0.076 0.924 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.975 3.025 22 H -0.255 1.255 23 H -0.277 1.277 24 H -0.276 1.276 25 C -0.125 4.125 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.088 0.912 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.001 0.999 44 H 0.007 0.993 45 H 0.268 0.732 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 14.240 18.898 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.094 4.094 3 C -0.128 4.128 4 C -0.137 4.137 5 C -0.086 4.086 6 C -0.185 4.185 7 C 0.034 3.966 8 N -0.773 5.773 9 C 0.023 3.977 10 C -0.212 4.212 11 C -0.222 4.222 12 S 2.698 3.302 13 O -0.971 6.971 14 O -0.978 6.978 15 C -0.718 4.718 16 C -0.014 4.014 17 C -0.577 4.577 18 H 0.094 0.906 19 C -0.201 4.201 20 N -0.574 5.574 21 Si 0.799 3.201 22 H -0.178 1.178 23 H -0.203 1.203 24 H -0.202 1.202 25 C -0.145 4.145 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.020 0.980 44 H 0.025 0.975 45 H 0.077 0.923 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.799 14.257 18.420 23.783 hybrid contribution -0.586 -1.003 -0.896 1.467 sum -5.385 13.254 17.525 22.623 Atomic orbital electron populations 1.20829 0.89157 1.03529 1.03308 1.20106 0.97486 0.92342 0.99494 1.21408 0.93903 0.98516 0.99007 1.21201 0.94703 0.97325 1.00462 1.20292 0.96609 0.92955 0.98706 1.21026 0.91516 1.03615 1.02360 1.17182 0.90521 0.84153 1.04718 1.55204 1.71080 1.29739 1.21261 1.21312 0.98596 0.95329 0.82493 1.22170 1.00173 0.99834 0.99000 1.22268 0.96026 1.02030 1.01896 1.05330 0.76985 0.74359 0.73477 1.93500 1.84844 1.49808 1.68931 1.93484 1.53345 1.69115 1.81842 1.30390 1.18705 1.13488 1.09253 1.18796 0.97719 0.94764 0.90160 1.21504 0.97616 1.28096 1.10467 0.90606 1.26135 0.99199 0.97863 0.96935 1.70110 1.26109 1.41675 1.19543 0.85245 0.78696 0.77906 0.78299 1.17836 1.20286 1.20157 1.21537 0.92650 0.99415 1.00940 0.89747 0.90236 0.91639 0.83165 0.83669 0.92241 0.88972 0.91846 0.88661 0.89220 0.92739 0.91672 0.91176 0.92437 0.89315 0.83998 0.84728 0.98020 0.97477 0.92307 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.01 71.24 0.71 -0.89 16 2 C -0.09 -1.87 5.88 -19.88 -0.12 -1.99 16 3 C -0.11 -2.04 9.70 22.29 0.22 -1.82 16 4 C -0.12 -2.48 9.72 22.25 0.22 -2.27 16 5 C -0.08 -2.16 4.88 -19.73 -0.10 -2.26 16 6 C -0.13 -3.33 8.81 71.23 0.63 -2.70 16 7 C 0.13 3.47 3.46 38.22 0.13 3.60 16 8 N -0.94 -27.54 1.67 -318.95 -0.53 -28.08 16 9 C 0.13 3.02 3.24 44.99 0.15 3.17 16 10 C -0.15 -3.01 7.94 71.98 0.57 -2.44 16 11 C -0.16 -3.05 8.79 71.98 0.63 -2.42 16 12 S 2.60 102.17 5.39 -56.49 -0.30 101.86 16 13 O -0.98 -43.62 15.96 -127.65 -2.04 -45.66 16 14 O -0.99 -43.51 16.41 -127.65 -2.09 -45.61 16 15 C -0.59 -23.91 6.12 71.98 0.44 -23.47 16 16 C 0.02 1.33 4.98 29.85 0.15 1.48 16 17 C -0.54 -30.41 9.11 25.60 0.23 -30.17 16 18 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 19 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 20 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 21 Si 0.98 43.58 29.54 68.60 2.03 45.61 16 22 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 25 C -0.12 -2.97 8.17 22.40 0.18 -2.79 16 26 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 28 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 29 H 0.15 1.86 8.06 -2.92 -0.02 1.83 16 30 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 31 H 0.06 1.80 7.78 -2.39 -0.02 1.78 16 32 H 0.09 1.76 8.12 -2.39 -0.02 1.75 16 33 H 0.06 1.70 4.43 -2.38 -0.01 1.69 16 34 H 0.10 2.54 6.68 -2.39 -0.02 2.52 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.16 6.44 -2.39 -0.02 1.14 16 37 H 0.06 1.26 6.80 -2.38 -0.02 1.25 16 38 H 0.07 1.23 6.75 -2.39 -0.02 1.21 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.14 5.02 8.14 -2.39 -0.02 5.00 16 42 H 0.13 5.01 8.14 -2.39 -0.02 4.99 16 43 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 45 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 46 H 0.13 2.91 7.74 -2.91 -0.02 2.88 16 Total: -1.00 -75.49 378.05 2.80 -72.69 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.95 Total: 21.20 kcal Atomic # 6 Polarization: -69.18 SS G_CDS: 4.51 Total: -64.67 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -0.25 Total: -85.42 kcal Atomic # 8 Polarization: -87.13 SS G_CDS: -4.13 Total: -91.26 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 102.17 SS G_CDS: -0.30 Total: 101.86 kcal Total: -75.49 2.80 -72.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118432973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.492 kcal (2) G-P(sol) polarization free energy of solvation -75.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds