Wall clock time and date at job start Tue Mar 31 2020 14:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34236 * 116.99603 * 2 1 4 4 O 1.20818 * 120.00146 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99689 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.47315 * 60.00013 * 5 3 2 7 7 N 1.46501 * 109.47111 * 179.97438 * 5 3 2 8 8 C 1.38851 * 120.00503 * 275.00252 * 7 5 3 9 9 C 1.39572 * 119.84041 * 359.72107 * 8 7 5 10 10 C 1.36341 * 120.16200 * 179.71957 * 9 8 7 11 11 C 1.40878 * 119.83559 * 0.55633 * 10 9 8 12 12 C 1.41138 * 120.15749 * 179.70082 * 11 10 9 13 13 H 1.07996 * 120.00224 * 204.62181 * 12 11 10 14 14 C 1.39867 * 119.99953 * 24.62419 * 12 11 10 15 15 N 1.30905 * 120.00111 * 17.96302 * 14 12 11 16 16 Si 1.86797 * 119.99774 * 197.97080 * 14 12 11 17 17 H 1.48496 * 109.47425 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47246 * 119.99917 * 16 14 12 19 19 H 1.48507 * 109.47050 * 239.99580 * 16 14 12 20 20 C 1.40893 * 119.69181 * 359.71564 * 11 10 9 21 21 C 1.36343 * 119.83022 * 0.02562 * 20 11 10 22 22 C 1.50696 * 109.47544 * 299.99618 * 5 3 2 23 23 C 1.38256 * 120.00572 * 265.03009 * 22 5 3 24 24 C 1.38212 * 120.00443 * 179.97438 * 23 22 5 25 25 C 1.38254 * 119.99914 * 359.97231 * 24 23 22 26 26 C 1.38211 * 120.00013 * 359.74912 * 25 24 23 27 27 C 1.38217 * 120.00131 * 84.99851 * 22 5 3 28 28 C 1.50707 * 119.99616 * 0.02562 * 27 22 5 29 29 H 1.09007 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47123 * 299.99999 * 1 2 3 31 31 H 1.08998 * 109.47549 * 60.00374 * 1 2 3 32 32 H 0.97002 * 120.00009 * 94.99711 * 7 5 3 33 33 H 1.08005 * 119.91665 * 359.97438 * 9 8 7 34 34 H 1.08001 * 120.07898 * 180.28104 * 10 9 8 35 35 H 0.96999 * 120.00112 * 180.02562 * 15 14 12 36 36 H 1.07990 * 120.08516 * 180.02562 * 20 11 10 37 37 H 1.08003 * 119.91369 * 179.97438 * 21 20 11 38 38 H 1.08006 * 119.99572 * 359.96920 * 23 22 5 39 39 H 1.08002 * 119.99945 * 179.97438 * 24 23 22 40 40 H 1.08003 * 120.00111 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.00267 * 180.27850 * 26 25 24 42 42 H 1.08995 * 109.47301 * 89.99744 * 28 27 22 43 43 H 1.08999 * 109.46743 * 329.99595 * 28 27 22 44 44 H 1.09000 * 109.47085 * 209.99901 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9556 0.7810 -0.8909 7 7 3.9816 2.6799 -0.0011 8 6 4.0774 3.3752 -1.1991 9 6 3.7829 2.7307 -2.4016 10 6 3.8693 3.4088 -3.5813 11 6 4.2684 4.7598 -3.5855 12 6 4.3663 5.4665 -4.8034 13 1 5.0203 6.3225 -4.8800 14 6 3.6162 5.0581 -5.9111 15 7 2.5833 4.2707 -5.7478 16 14 4.0888 5.6360 -7.6234 17 1 5.2850 6.5118 -7.5377 18 1 4.3961 4.4595 -8.4757 19 1 2.9604 6.3968 -8.2180 20 6 4.5697 5.4024 -2.3684 21 6 4.4737 4.7133 -1.1958 22 6 4.1056 0.5917 1.2295 23 6 4.3960 1.3321 2.3604 24 6 4.8902 0.7053 3.4888 25 6 5.0937 -0.6621 3.4868 26 6 4.7980 -1.4032 2.3582 27 6 4.3095 -0.7753 1.2274 28 6 3.9929 -1.5825 -0.0053 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 4.1895 3.1244 0.8356 33 1 3.4818 1.6935 -2.3972 34 1 3.6368 2.9100 -4.5106 35 1 2.0633 3.9872 -6.5161 36 1 4.8758 6.4380 -2.3642 37 1 4.7048 5.2044 -0.2621 38 1 4.2367 2.4003 2.3621 39 1 5.1174 1.2838 4.3720 40 1 5.4803 -1.1519 4.3683 41 1 4.9527 -2.4720 2.3581 42 1 4.8754 -1.6335 -0.6428 43 1 3.1775 -1.1076 -0.5509 44 1 3.6966 -2.5901 0.2864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120433705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:12 Heat of formation + Delta-G solvation = -26.861320 kcal Electronic energy + Delta-G solvation = -27229.034549 eV Core-core repulsion = 23497.346851 eV Total energy + Delta-G solvation = -3731.687698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.69872 -39.29263 -37.92813 -36.30689 -35.15238 -33.44665 -32.86064 -31.19972 -29.53640 -28.82617 -28.06945 -27.06511 -26.09363 -24.25860 -22.33777 -21.64601 -21.35610 -20.46786 -19.61611 -17.54111 -17.25030 -17.17673 -16.65343 -16.11135 -15.85085 -15.34684 -15.00646 -14.91062 -14.36316 -13.88727 -13.74623 -13.47892 -13.34698 -13.18730 -12.78585 -12.66646 -12.37789 -12.31923 -12.15923 -11.92904 -11.88990 -11.67547 -11.48551 -11.14776 -11.04935 -10.95608 -10.81165 -10.59757 -10.54087 -10.32820 -9.71213 -9.38130 -9.30501 -8.91719 -8.72187 -8.59277 -7.51300 -6.67549 -6.47893 -4.06085 1.16392 1.28635 2.50040 2.74206 2.95217 3.09285 3.15218 3.20719 3.36566 3.62162 4.04736 4.14356 4.52089 4.72304 4.74688 4.82652 4.91214 5.09899 5.17963 5.24154 5.25358 5.30747 5.47628 5.59635 5.60362 5.64666 5.78834 5.81714 5.89614 6.17328 6.20994 6.27470 6.32288 6.38317 6.50350 6.56522 6.81238 6.86194 6.89978 7.17593 7.33174 7.46742 7.65847 7.77765 8.01980 8.13151 8.22858 8.41597 8.55846 8.75137 9.04336 9.11945 10.35765 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017221 B = 0.003246 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.526938 B = 8623.381506 C = 9199.406730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.361 6.361 3 C 0.437 3.563 4 O -0.480 6.480 5 C 0.219 3.781 6 H 0.121 0.879 7 N -0.728 5.728 8 C 0.087 3.913 9 C -0.159 4.159 10 C -0.125 4.125 11 C 0.079 3.921 12 C -0.465 4.465 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.804 5.804 16 Si 0.903 3.097 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.277 1.277 20 C -0.187 4.187 21 C -0.146 4.146 22 C -0.090 4.090 23 C -0.101 4.101 24 C -0.126 4.126 25 C -0.114 4.114 26 C -0.122 4.122 27 C -0.057 4.057 28 C -0.128 4.128 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.391 0.609 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.276 0.724 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 -13.208 13.788 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.278 6.278 3 C 0.275 3.725 4 O -0.364 6.364 5 C 0.108 3.892 6 H 0.138 0.862 7 N -0.365 5.365 8 C -0.009 4.009 9 C -0.180 4.180 10 C -0.145 4.145 11 C 0.077 3.923 12 C -0.496 4.496 13 H 0.092 0.908 14 C -0.141 4.141 15 N -0.431 5.431 16 Si 0.728 3.272 17 H -0.186 1.186 18 H -0.199 1.199 19 H -0.203 1.203 20 C -0.208 4.208 21 C -0.168 4.168 22 C -0.090 4.090 23 C -0.119 4.119 24 C -0.144 4.144 25 C -0.132 4.132 26 C -0.140 4.140 27 C -0.057 4.057 28 C -0.184 4.184 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.227 0.773 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.672 -13.108 13.533 18.853 hybrid contribution -0.264 0.554 -0.441 0.756 sum 0.408 -12.554 13.092 18.143 Atomic orbital electron populations 1.23195 0.77390 1.03080 1.02412 1.86542 1.22693 1.33994 1.84566 1.25134 0.92979 0.81525 0.72871 1.90682 1.66317 1.36291 1.43143 1.18918 0.85756 0.86307 0.98240 0.86187 1.43728 1.77373 1.08273 1.07099 1.17239 1.07037 0.92032 0.84577 1.20025 1.07876 0.97718 0.92382 1.20896 1.02983 0.94422 0.96166 1.17510 0.91236 0.91516 0.92074 1.19418 1.22724 1.12828 0.94623 0.90780 1.25822 0.93329 0.93984 1.01000 1.69875 1.12402 1.28643 1.32220 0.86353 0.79529 0.79276 0.82033 1.18578 1.19928 1.20270 1.20543 1.10115 0.98027 0.92078 1.19762 1.07345 0.92536 0.97135 1.19480 1.01544 0.93533 0.94476 1.20938 0.98547 0.99902 0.92557 1.21065 1.00371 0.94877 0.98088 1.21147 0.99698 0.94174 0.98189 1.20999 1.00335 0.99828 0.92821 1.19724 0.97099 0.92684 0.96242 1.21001 1.02642 0.99550 0.95200 0.88529 0.92417 0.91907 0.77284 0.90024 0.86309 0.91323 0.88852 0.89415 0.85888 0.85941 0.86081 0.85836 0.90785 0.89882 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.26 8.20 -39.27 -0.32 -5.58 16 3 C 0.44 7.62 7.09 36.00 0.26 7.88 16 4 O -0.48 -10.17 16.10 -18.74 -0.30 -10.47 16 5 C 0.22 3.53 1.74 -70.24 -0.12 3.40 16 6 H 0.12 1.94 5.28 -51.93 -0.27 1.67 16 7 N -0.73 -13.27 4.65 -54.29 -0.25 -13.52 16 8 C 0.09 1.93 6.55 -83.69 -0.55 1.39 16 9 C -0.16 -3.78 9.07 -39.77 -0.36 -4.14 16 10 C -0.12 -3.31 8.64 -39.27 -0.34 -3.65 16 11 C 0.08 2.17 5.57 -106.79 -0.60 1.57 16 12 C -0.47 -12.69 9.03 -37.87 -0.34 -13.04 16 13 H 0.07 1.95 7.91 -52.49 -0.41 1.54 16 14 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 15 N -0.80 -21.58 10.96 55.54 0.61 -20.98 16 16 Si 0.90 19.29 29.60 -169.99 -5.03 14.26 16 17 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 C -0.19 -4.70 9.74 -39.26 -0.38 -5.08 16 21 C -0.15 -3.34 9.82 -39.77 -0.39 -3.73 16 22 C -0.09 -1.21 4.98 -104.62 -0.52 -1.74 16 23 C -0.10 -1.26 9.24 -39.58 -0.37 -1.63 16 24 C -0.13 -1.31 10.05 -39.59 -0.40 -1.71 16 25 C -0.11 -1.09 10.05 -39.59 -0.40 -1.49 16 26 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 27 C -0.06 -0.67 5.82 -104.62 -0.61 -1.28 16 28 C -0.13 -1.32 9.10 36.01 0.33 -0.99 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.39 6.39 6.21 -40.82 -0.25 6.13 16 33 H 0.08 1.78 6.14 -52.48 -0.32 1.46 16 34 H 0.12 3.26 6.16 -52.49 -0.32 2.93 16 35 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 36 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 38 H 0.12 1.48 6.08 -52.48 -0.32 1.16 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.96 4.55 -51.93 -0.24 0.73 16 44 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -31.58 364.25 -9.51 -41.09 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.50 Total: 12.25 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -4.20 Total: -22.54 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.36 Total: -34.50 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.62 Total: -16.05 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.58 -9.51 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120433705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.228 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds