Wall clock time and date at job start Tue Mar 31 2020 14:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34236 * 116.99603 * 2 1 4 4 O 1.20818 * 120.00146 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99689 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.47315 * 60.00013 * 5 3 2 7 7 N 1.46501 * 109.47111 * 179.97438 * 5 3 2 8 8 C 1.38851 * 120.00503 * 275.00252 * 7 5 3 9 9 C 1.39572 * 119.84041 * 359.72107 * 8 7 5 10 10 C 1.36341 * 120.16200 * 179.71957 * 9 8 7 11 11 C 1.40878 * 119.83559 * 0.55633 * 10 9 8 12 12 C 1.41138 * 120.15749 * 179.70082 * 11 10 9 13 13 H 1.07996 * 120.00224 * 204.62181 * 12 11 10 14 14 C 1.39867 * 119.99953 * 24.62419 * 12 11 10 15 15 N 1.30905 * 120.00111 * 17.96302 * 14 12 11 16 16 Si 1.86797 * 119.99774 * 197.97080 * 14 12 11 17 17 H 1.48496 * 109.47425 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47246 * 119.99917 * 16 14 12 19 19 H 1.48507 * 109.47050 * 239.99580 * 16 14 12 20 20 C 1.40893 * 119.69181 * 359.71564 * 11 10 9 21 21 C 1.36343 * 119.83022 * 0.02562 * 20 11 10 22 22 C 1.50696 * 109.47544 * 299.99618 * 5 3 2 23 23 C 1.38256 * 120.00572 * 265.03009 * 22 5 3 24 24 C 1.38212 * 120.00443 * 179.97438 * 23 22 5 25 25 C 1.38254 * 119.99914 * 359.97231 * 24 23 22 26 26 C 1.38211 * 120.00013 * 359.74912 * 25 24 23 27 27 C 1.38217 * 120.00131 * 84.99851 * 22 5 3 28 28 C 1.50707 * 119.99616 * 0.02562 * 27 22 5 29 29 H 1.09007 * 109.46906 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47123 * 299.99999 * 1 2 3 31 31 H 1.08998 * 109.47549 * 60.00374 * 1 2 3 32 32 H 0.97002 * 120.00009 * 94.99711 * 7 5 3 33 33 H 1.08005 * 119.91665 * 359.97438 * 9 8 7 34 34 H 1.08001 * 120.07898 * 180.28104 * 10 9 8 35 35 H 0.96999 * 120.00112 * 180.02562 * 15 14 12 36 36 H 1.07990 * 120.08516 * 180.02562 * 20 11 10 37 37 H 1.08003 * 119.91369 * 179.97438 * 21 20 11 38 38 H 1.08006 * 119.99572 * 359.96920 * 23 22 5 39 39 H 1.08002 * 119.99945 * 179.97438 * 24 23 22 40 40 H 1.08003 * 120.00111 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.00267 * 180.27850 * 26 25 24 42 42 H 1.08995 * 109.47301 * 89.99744 * 28 27 22 43 43 H 1.08999 * 109.46743 * 329.99595 * 28 27 22 44 44 H 1.09000 * 109.47085 * 209.99901 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9556 0.7810 -0.8909 7 7 3.9816 2.6799 -0.0011 8 6 4.0774 3.3752 -1.1991 9 6 3.7829 2.7307 -2.4016 10 6 3.8693 3.4088 -3.5813 11 6 4.2684 4.7598 -3.5855 12 6 4.3663 5.4665 -4.8034 13 1 5.0203 6.3225 -4.8800 14 6 3.6162 5.0581 -5.9111 15 7 2.5833 4.2707 -5.7478 16 14 4.0888 5.6360 -7.6234 17 1 5.2850 6.5118 -7.5377 18 1 4.3961 4.4595 -8.4757 19 1 2.9604 6.3968 -8.2180 20 6 4.5697 5.4024 -2.3684 21 6 4.4737 4.7133 -1.1958 22 6 4.1056 0.5917 1.2295 23 6 4.3960 1.3321 2.3604 24 6 4.8902 0.7053 3.4888 25 6 5.0937 -0.6621 3.4868 26 6 4.7980 -1.4032 2.3582 27 6 4.3095 -0.7753 1.2274 28 6 3.9929 -1.5825 -0.0053 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 4.1895 3.1244 0.8356 33 1 3.4818 1.6935 -2.3972 34 1 3.6368 2.9100 -4.5106 35 1 2.0633 3.9872 -6.5161 36 1 4.8758 6.4380 -2.3642 37 1 4.7048 5.2044 -0.2621 38 1 4.2367 2.4003 2.3621 39 1 5.1174 1.2838 4.3720 40 1 5.4803 -1.1519 4.3683 41 1 4.9527 -2.4720 2.3581 42 1 4.8754 -1.6335 -0.6428 43 1 3.1775 -1.1076 -0.5509 44 1 3.6966 -2.5901 0.2864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120433705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:11 Heat of formation + Delta-G solvation = -42.846303 kcal Electronic energy + Delta-G solvation = -27229.727710 eV Core-core repulsion = 23497.346851 eV Total energy + Delta-G solvation = -3732.380859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96102 -40.32492 -39.66225 -37.70823 -36.69537 -35.10385 -33.86599 -32.50479 -31.44561 -30.31564 -29.37039 -28.04501 -27.22692 -26.04392 -23.34185 -23.18772 -22.83523 -21.85570 -21.07763 -19.21281 -18.77839 -18.54630 -17.96949 -17.32587 -17.18745 -16.85996 -16.32272 -15.98388 -15.81391 -15.29419 -14.88208 -14.68558 -14.55048 -14.48692 -14.30611 -13.98864 -13.92566 -13.64648 -13.50279 -13.23085 -13.18295 -12.99205 -12.78079 -12.76199 -12.60662 -12.32771 -12.03419 -11.89242 -11.82614 -11.72627 -11.59276 -11.25601 -11.14870 -10.48892 -9.77518 -9.52413 -9.45992 -8.59570 -8.32241 -6.06464 0.28141 0.46589 1.02686 1.12246 1.15536 1.39638 1.49198 1.55024 1.71874 2.26284 2.60209 2.81245 2.88978 3.44562 3.76839 3.80243 3.93511 4.02252 4.08680 4.23072 4.26297 4.28703 4.37089 4.44706 4.49342 4.62979 4.65221 4.82166 4.87260 4.94208 4.96616 5.00414 5.09519 5.22232 5.29451 5.38462 5.40039 5.47734 5.58922 5.59716 5.67380 5.73341 5.87570 6.07807 6.14190 6.29665 6.51866 6.69833 6.78688 6.95938 7.04774 7.17389 8.45461 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017221 B = 0.003246 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.526938 B = 8623.381506 C = 9199.406730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.440 3.560 4 O -0.527 6.527 5 C 0.219 3.781 6 H 0.117 0.883 7 N -0.722 5.722 8 C 0.106 3.894 9 C -0.169 4.169 10 C -0.144 4.144 11 C 0.042 3.958 12 C -0.502 4.502 13 H 0.071 0.929 14 C 0.031 3.969 15 N -0.841 5.841 16 Si 0.980 3.020 17 H -0.259 1.259 18 H -0.265 1.265 19 H -0.270 1.270 20 C -0.196 4.196 21 C -0.154 4.154 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.129 4.129 25 C -0.108 4.108 26 C -0.122 4.122 27 C -0.066 4.066 28 C -0.128 4.128 29 H 0.139 0.861 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.401 0.599 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.283 0.717 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.145 0.855 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.880 -15.150 15.663 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.281 3.719 4 O -0.414 6.414 5 C 0.110 3.890 6 H 0.135 0.865 7 N -0.358 5.358 8 C 0.008 3.992 9 C -0.191 4.191 10 C -0.164 4.164 11 C 0.039 3.961 12 C -0.533 4.533 13 H 0.089 0.911 14 C -0.181 4.181 15 N -0.469 5.469 16 Si 0.801 3.199 17 H -0.182 1.182 18 H -0.190 1.190 19 H -0.195 1.195 20 C -0.216 4.216 21 C -0.176 4.176 22 C -0.112 4.112 23 C -0.136 4.136 24 C -0.146 4.146 25 C -0.126 4.126 26 C -0.139 4.139 27 C -0.066 4.066 28 C -0.184 4.184 29 H 0.157 0.843 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.239 0.761 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.163 0.837 40 H 0.171 0.829 41 H 0.169 0.831 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.404 -15.093 15.457 21.649 hybrid contribution -0.526 0.995 -0.770 1.363 sum 0.878 -14.098 14.687 20.378 Atomic orbital electron populations 1.23514 0.75702 1.05687 1.01825 1.86540 1.24252 1.32237 1.83716 1.25310 0.93469 0.81581 0.71526 1.90664 1.67380 1.37781 1.45616 1.18998 0.85120 0.85023 0.99905 0.86546 1.43716 1.76756 1.09245 1.06117 1.17349 1.04238 0.92055 0.85568 1.20165 1.08120 0.98501 0.92315 1.20827 1.04486 0.94649 0.96436 1.17839 0.92894 0.92161 0.93164 1.19645 1.24005 1.13721 0.95963 0.91071 1.26678 0.92689 0.93917 1.04849 1.69943 1.13349 1.29936 1.33654 0.85206 0.79231 0.78964 0.76516 1.18212 1.18981 1.19477 1.20767 1.09866 0.98642 0.92299 1.20079 1.06916 0.92858 0.97764 1.19351 1.03770 0.94448 0.93662 1.21045 0.99512 0.99896 0.93195 1.21366 0.99546 0.95721 0.98011 1.21574 0.98131 0.93823 0.99057 1.21353 0.99180 1.01304 0.92090 1.19929 0.97234 0.92024 0.97435 1.21023 1.02245 1.00397 0.94742 0.84292 0.92343 0.93246 0.76071 0.88604 0.88107 0.90711 0.88047 0.86267 0.86333 0.83723 0.82934 0.83077 0.90361 0.91583 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.35 -10.00 8.20 -51.47 -0.42 -10.43 16 3 C 0.44 15.44 7.09 71.23 0.50 15.95 16 4 O -0.53 -22.72 16.10 21.99 0.35 -22.37 16 5 C 0.22 7.05 1.74 43.50 0.08 7.12 16 6 H 0.12 3.80 5.28 -2.38 -0.01 3.78 16 7 N -0.72 -26.19 4.65 -325.68 -1.51 -27.70 16 8 C 0.11 4.75 6.55 38.67 0.25 5.01 16 9 C -0.17 -8.33 9.07 22.15 0.20 -8.12 16 10 C -0.14 -8.00 8.64 22.47 0.19 -7.81 16 11 C 0.04 2.40 5.57 -21.27 -0.12 2.28 16 12 C -0.50 -28.60 9.03 23.38 0.21 -28.39 16 13 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 14 C 0.03 1.64 5.13 85.23 0.44 2.08 16 15 N -0.84 -46.89 10.96 21.82 0.24 -46.65 16 16 Si 0.98 40.50 29.60 68.60 2.03 42.53 16 17 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 18 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 20 C -0.20 -10.05 9.74 22.48 0.22 -9.84 16 21 C -0.15 -7.07 9.82 22.15 0.22 -6.86 16 22 C -0.11 -2.90 4.98 -19.87 -0.10 -2.99 16 23 C -0.12 -2.77 9.24 22.27 0.21 -2.56 16 24 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 25 C -0.11 -1.64 10.05 22.27 0.22 -1.42 16 26 C -0.12 -2.00 9.70 22.27 0.22 -1.78 16 27 C -0.07 -1.40 5.82 -19.86 -0.12 -1.52 16 28 C -0.13 -2.40 9.10 71.24 0.65 -1.75 16 29 H 0.14 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 31 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 32 H 0.40 12.87 6.21 -92.71 -0.58 12.30 16 33 H 0.10 4.31 6.14 -2.91 -0.02 4.29 16 34 H 0.10 5.87 6.16 -2.91 -0.02 5.85 16 35 H 0.28 14.29 8.30 -92.71 -0.77 13.52 16 36 H 0.10 4.89 8.06 -2.92 -0.02 4.87 16 37 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 38 H 0.12 2.76 6.08 -2.91 -0.02 2.74 16 39 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.47 4.55 -2.39 -0.01 1.46 16 44 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 Total: -1.00 -71.64 364.25 5.84 -65.79 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: 0.46 Total: 39.71 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 4.69 Total: -40.89 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -1.28 Total: -74.35 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.07 Total: -32.79 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -71.64 5.84 -65.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120433705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.947 kcal (2) G-P(sol) polarization free energy of solvation -71.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds