Wall clock time and date at job start Tue Mar 31 2020 14:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00228 * 2 1 4 4 H 1.48507 * 109.46874 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46932 * 299.99872 * 3 2 1 6 6 H 1.48502 * 109.46985 * 59.99955 * 3 2 1 7 7 C 1.37878 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00081 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47587 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47168 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47220 * 180.02562 * 11 10 9 13 13 C 1.47019 * 110.99780 * 292.90292 * 12 11 10 14 14 C 1.53103 * 109.25431 * 177.60639 * 13 12 11 15 15 O 1.43012 * 109.25819 * 56.84861 * 14 13 12 16 16 C 1.43012 * 113.73873 * 301.32565 * 15 14 13 17 17 C 1.47013 * 111.00138 * 169.26665 * 12 11 10 18 18 H 1.08996 * 109.50587 * 62.41358 * 17 12 11 19 19 C 1.53001 * 109.50383 * 302.32815 * 17 12 11 20 20 C 1.53008 * 109.46605 * 177.82009 * 19 17 12 21 21 H 1.08998 * 109.47259 * 55.18966 * 20 19 17 22 22 O 1.42895 * 109.46991 * 295.18351 * 20 19 17 23 23 C 1.50702 * 109.46484 * 175.18921 * 20 19 17 24 24 C 1.33393 * 125.20017 * 264.99202 * 23 20 19 25 25 C 1.38423 * 114.91960 * 179.97438 * 24 23 20 26 26 C 1.33386 * 114.92292 * 0.02562 * 25 24 23 27 27 S 1.75883 * 125.20568 * 84.69855 * 23 20 19 28 28 H 0.96995 * 120.00079 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46972 * 59.99789 * 9 7 2 30 30 H 1.09000 * 109.46917 * 300.00575 * 9 7 2 31 31 H 1.08997 * 109.46719 * 60.00141 * 10 9 7 32 32 H 1.09000 * 109.47355 * 299.99971 * 10 9 7 33 33 H 1.08997 * 109.47101 * 60.00478 * 11 10 9 34 34 H 1.09000 * 109.47043 * 300.00265 * 11 10 9 35 35 H 1.09000 * 109.50592 * 297.54108 * 13 12 11 36 36 H 1.08997 * 109.50499 * 57.62833 * 13 12 11 37 37 H 1.08997 * 109.49922 * 176.78318 * 14 13 12 38 38 H 1.08998 * 109.50349 * 296.91132 * 14 13 12 39 39 H 1.08999 * 109.50934 * 298.74063 * 16 15 14 40 40 H 1.08997 * 109.51063 * 178.60526 * 16 15 14 41 41 H 1.08991 * 109.47483 * 57.81994 * 19 17 12 42 42 H 1.09004 * 109.47174 * 297.81535 * 19 17 12 43 43 H 0.96708 * 114.00391 * 296.31602 * 22 20 19 44 44 H 1.08000 * 122.54019 * 0.02562 * 24 23 20 45 45 H 1.08002 * 122.54042 * 180.02562 * 25 24 23 46 46 H 1.07997 * 125.20941 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4348 -6.1038 0.0018 13 6 3.1832 -6.1578 -1.2625 14 6 4.2054 -7.2956 -1.1959 15 8 3.5273 -8.5230 -0.9152 16 6 2.7888 -8.5058 0.3093 17 6 1.7521 -7.3803 0.2580 18 1 1.0383 -7.5783 -0.5415 19 6 1.0131 -7.3050 1.5956 20 6 0.2587 -8.6143 1.8358 21 1 0.9541 -9.4512 1.7730 22 8 -0.7597 -8.7658 0.8449 23 6 -0.3720 -8.5867 3.2042 24 6 0.1686 -9.0995 4.3105 25 6 -0.5966 -8.9547 5.4549 26 6 -1.7589 -8.3247 5.2778 27 16 -1.9302 -7.8669 3.5882 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5572 -0.8897 30 1 0.6240 -2.5567 0.8902 31 1 2.8718 -3.6044 0.8905 32 1 2.8719 -3.6045 -0.8894 33 1 0.8533 -5.0452 -0.8886 34 1 0.8538 -5.0446 0.8914 35 1 2.4928 -6.3365 -2.0868 36 1 3.7006 -5.2114 -1.4198 37 1 4.7231 -7.3760 -2.1517 38 1 4.9279 -7.0899 -0.4060 39 1 3.4701 -8.3354 1.1430 40 1 2.2819 -9.4616 0.4422 41 1 0.3052 -6.4765 1.5734 42 1 1.7321 -7.1472 2.3996 43 1 -1.4463 -8.0856 0.8792 44 1 1.1309 -9.5899 4.3134 45 1 -0.2768 -9.3238 6.4182 46 1 -2.4819 -8.1220 6.0541 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121867320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:46 Heat of formation + Delta-G solvation = -66.056677 kcal Electronic energy + Delta-G solvation = -25654.673410 eV Core-core repulsion = 22056.730025 eV Total energy + Delta-G solvation = -3597.943385 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.03444 -38.56286 -37.08870 -36.19376 -33.79284 -32.88674 -31.28904 -30.68921 -28.41192 -27.39150 -25.42386 -25.09205 -23.29264 -22.47007 -21.83522 -20.16046 -19.87979 -19.67325 -18.15024 -16.63877 -16.50823 -16.29053 -15.99267 -15.72266 -15.32587 -14.86047 -14.69416 -14.50058 -14.24957 -13.97120 -13.63089 -13.58831 -13.27273 -12.94568 -12.69905 -12.38972 -12.30583 -12.09259 -11.79282 -11.65389 -11.48656 -11.24337 -11.07740 -10.94285 -10.84181 -10.61212 -10.52845 -10.45694 -10.32025 -9.65792 -9.59240 -9.30911 -9.04065 -8.91271 -8.70016 -8.35409 -8.15756 -6.00492 -4.02467 0.72292 1.34389 1.73441 2.48005 3.30524 3.38029 3.42317 3.78397 3.84380 4.13293 4.32193 4.46441 4.64961 4.81729 4.86124 4.98744 4.99239 5.12274 5.16306 5.24269 5.28493 5.33487 5.35546 5.41488 5.57304 5.65489 5.71111 5.78600 5.86029 5.88653 5.92848 5.95760 6.01035 6.13843 6.20376 6.30989 6.65438 6.72826 7.05600 7.10142 7.23612 7.28111 7.29773 7.67344 7.81659 7.99716 8.43113 9.04805 9.61680 11.10980 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009656 B = 0.003331 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.999393 B = 8403.402373 C =10649.751876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.051 3.949 12 N -0.532 5.532 13 C 0.017 3.983 14 C 0.063 3.937 15 O -0.387 6.387 16 C 0.068 3.932 17 C 0.053 3.947 18 H 0.056 0.944 19 C -0.142 4.142 20 C 0.178 3.822 21 H 0.117 0.883 22 O -0.549 6.549 23 C -0.210 4.210 24 C -0.132 4.132 25 C -0.135 4.135 26 C -0.212 4.212 27 S 0.111 5.889 28 H 0.259 0.741 29 H 0.013 0.987 30 H 0.015 0.985 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.029 0.971 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.375 0.625 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 -21.400 6.835 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.141 4.141 11 C -0.075 4.075 12 N -0.257 5.257 13 C -0.111 4.111 14 C -0.014 4.014 15 O -0.305 6.305 16 C -0.009 4.009 17 C -0.056 4.056 18 H 0.074 0.926 19 C -0.180 4.180 20 C 0.116 3.884 21 H 0.135 0.865 22 O -0.355 6.355 23 C -0.328 4.328 24 C -0.162 4.162 25 C -0.166 4.166 26 C -0.348 4.348 27 S 0.374 5.626 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.222 0.778 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.523 -21.125 6.105 21.996 hybrid contribution 0.472 0.999 0.720 1.319 sum -0.051 -20.126 6.825 21.251 Atomic orbital electron populations 1.69973 1.06052 1.26446 1.51089 1.25025 0.94837 0.99249 0.95377 0.86554 0.80158 0.83844 0.77565 1.19723 1.21041 1.21017 1.21277 0.93060 0.91009 1.50245 0.92657 1.19070 0.94014 0.91419 0.97038 1.21639 0.99153 0.92626 1.00720 1.22406 0.93886 0.90823 1.00419 1.62322 1.27670 1.02641 1.33113 1.22812 0.97139 1.00334 0.90864 1.22697 0.93872 0.83390 1.01402 1.87959 1.66475 1.35189 1.40896 1.22749 0.93009 0.98033 0.87081 1.22149 0.95330 0.90960 0.97158 0.92588 1.22403 1.00400 0.97183 0.98046 1.20469 0.88411 0.98752 0.80719 0.86529 1.86621 1.38333 1.55312 1.55211 1.25475 0.99921 1.06678 1.00677 1.20071 1.01784 1.02984 0.91404 1.20177 0.94478 1.02059 0.99840 1.25644 1.02763 1.07149 0.99216 1.84302 1.17869 1.56756 1.03623 0.93098 0.96863 0.96667 0.92639 0.93504 0.95222 0.90776 0.94191 0.88804 0.88676 0.92327 0.92431 0.88825 0.90108 0.89450 0.77775 0.84153 0.84192 0.81795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.12 5.10 -26.73 -0.14 -2.26 16 11 C 0.05 0.88 4.75 -3.82 -0.02 0.86 16 12 N -0.53 -7.84 4.53 -226.33 -1.03 -8.87 16 13 C 0.02 0.23 5.44 -3.71 -0.02 0.21 16 14 C 0.06 0.76 7.01 37.21 0.26 1.02 16 15 O -0.39 -5.12 10.83 -35.23 -0.38 -5.50 16 16 C 0.07 0.79 5.91 37.21 0.22 1.01 16 17 C 0.05 0.67 2.01 -67.60 -0.14 0.53 16 18 H 0.06 0.79 7.76 -51.93 -0.40 0.39 16 19 C -0.14 -1.59 4.20 -26.73 -0.11 -1.70 16 20 C 0.18 1.75 3.23 -27.88 -0.09 1.66 16 21 H 0.12 1.03 6.33 -51.93 -0.33 0.70 16 22 O -0.55 -5.97 12.77 -35.23 -0.45 -6.42 16 23 C -0.21 -2.07 5.52 -36.00 -0.20 -2.27 16 24 C -0.13 -1.20 10.05 -41.21 -0.41 -1.61 16 25 C -0.13 -1.16 10.18 -41.21 -0.42 -1.58 16 26 C -0.21 -1.86 11.23 29.04 0.33 -1.54 16 27 S 0.11 1.07 22.43 -107.50 -2.41 -1.34 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.95 6.54 -51.93 -0.34 0.61 16 33 H 0.03 0.53 8.11 -51.93 -0.42 0.10 16 34 H 0.07 1.25 5.68 -51.93 -0.29 0.96 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.34 6.41 -51.93 -0.33 1.00 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.92 6.56 -51.93 -0.34 0.58 16 41 H 0.08 1.00 6.03 -51.93 -0.31 0.69 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.37 3.43 8.27 45.56 0.38 3.81 16 44 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 375.92 15.07 5.66 5.66 Total: -1.00 -31.85 375.92 -10.77 -42.62 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.59 Total: 2.11 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -1.29 Total: -18.73 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.29 Total: -35.08 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.83 Total: -11.92 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.41 Total: -1.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.85 -10.77 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121867320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.440 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds