Wall clock time and date at job start Tue Mar 31 2020 14:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00228 * 2 1 4 4 H 1.48507 * 109.46874 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46932 * 299.99872 * 3 2 1 6 6 H 1.48502 * 109.46985 * 59.99955 * 3 2 1 7 7 C 1.37878 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00081 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47587 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47168 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47220 * 180.02562 * 11 10 9 13 13 C 1.47019 * 110.99780 * 292.90292 * 12 11 10 14 14 C 1.53103 * 109.25431 * 177.60639 * 13 12 11 15 15 O 1.43012 * 109.25819 * 56.84861 * 14 13 12 16 16 C 1.43012 * 113.73873 * 301.32565 * 15 14 13 17 17 C 1.47013 * 111.00138 * 169.26665 * 12 11 10 18 18 H 1.08996 * 109.50587 * 62.41358 * 17 12 11 19 19 C 1.53001 * 109.50383 * 302.32815 * 17 12 11 20 20 C 1.53008 * 109.46605 * 177.82009 * 19 17 12 21 21 H 1.08998 * 109.47259 * 55.18966 * 20 19 17 22 22 O 1.42895 * 109.46991 * 295.18351 * 20 19 17 23 23 C 1.50702 * 109.46484 * 175.18921 * 20 19 17 24 24 C 1.33393 * 125.20017 * 264.99202 * 23 20 19 25 25 C 1.38423 * 114.91960 * 179.97438 * 24 23 20 26 26 C 1.33386 * 114.92292 * 0.02562 * 25 24 23 27 27 S 1.75883 * 125.20568 * 84.69855 * 23 20 19 28 28 H 0.96995 * 120.00079 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46972 * 59.99789 * 9 7 2 30 30 H 1.09000 * 109.46917 * 300.00575 * 9 7 2 31 31 H 1.08997 * 109.46719 * 60.00141 * 10 9 7 32 32 H 1.09000 * 109.47355 * 299.99971 * 10 9 7 33 33 H 1.08997 * 109.47101 * 60.00478 * 11 10 9 34 34 H 1.09000 * 109.47043 * 300.00265 * 11 10 9 35 35 H 1.09000 * 109.50592 * 297.54108 * 13 12 11 36 36 H 1.08997 * 109.50499 * 57.62833 * 13 12 11 37 37 H 1.08997 * 109.49922 * 176.78318 * 14 13 12 38 38 H 1.08998 * 109.50349 * 296.91132 * 14 13 12 39 39 H 1.08999 * 109.50934 * 298.74063 * 16 15 14 40 40 H 1.08997 * 109.51063 * 178.60526 * 16 15 14 41 41 H 1.08991 * 109.47483 * 57.81994 * 19 17 12 42 42 H 1.09004 * 109.47174 * 297.81535 * 19 17 12 43 43 H 0.96708 * 114.00391 * 296.31602 * 22 20 19 44 44 H 1.08000 * 122.54019 * 0.02562 * 24 23 20 45 45 H 1.08002 * 122.54042 * 180.02562 * 25 24 23 46 46 H 1.07997 * 125.20941 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4348 -6.1038 0.0018 13 6 3.1832 -6.1578 -1.2625 14 6 4.2054 -7.2956 -1.1959 15 8 3.5273 -8.5230 -0.9152 16 6 2.7888 -8.5058 0.3093 17 6 1.7521 -7.3803 0.2580 18 1 1.0383 -7.5783 -0.5415 19 6 1.0131 -7.3050 1.5956 20 6 0.2587 -8.6143 1.8358 21 1 0.9541 -9.4512 1.7730 22 8 -0.7597 -8.7658 0.8449 23 6 -0.3720 -8.5867 3.2042 24 6 0.1686 -9.0995 4.3105 25 6 -0.5966 -8.9547 5.4549 26 6 -1.7589 -8.3247 5.2778 27 16 -1.9302 -7.8669 3.5882 28 1 -0.4850 0.8400 0.0004 29 1 0.6247 -2.5572 -0.8897 30 1 0.6240 -2.5567 0.8902 31 1 2.8718 -3.6044 0.8905 32 1 2.8719 -3.6045 -0.8894 33 1 0.8533 -5.0452 -0.8886 34 1 0.8538 -5.0446 0.8914 35 1 2.4928 -6.3365 -2.0868 36 1 3.7006 -5.2114 -1.4198 37 1 4.7231 -7.3760 -2.1517 38 1 4.9279 -7.0899 -0.4060 39 1 3.4701 -8.3354 1.1430 40 1 2.2819 -9.4616 0.4422 41 1 0.3052 -6.4765 1.5734 42 1 1.7321 -7.1472 2.3996 43 1 -1.4463 -8.0856 0.8792 44 1 1.1309 -9.5899 4.3134 45 1 -0.2768 -9.3238 6.4182 46 1 -2.4819 -8.1220 6.0541 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121867320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:45 Heat of formation + Delta-G solvation = -87.687637 kcal Electronic energy + Delta-G solvation = -25655.611399 eV Core-core repulsion = 22056.730025 eV Total energy + Delta-G solvation = -3598.881373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.06209 -39.34966 -37.86027 -37.44350 -35.58694 -34.12684 -33.01204 -31.49469 -29.70089 -28.54118 -26.99184 -25.93986 -24.33842 -23.97629 -22.76278 -21.78364 -21.03037 -20.37943 -18.93019 -18.50158 -17.61271 -17.25938 -17.13445 -16.57188 -16.51405 -16.29728 -15.86496 -15.68283 -15.42402 -15.11660 -14.94850 -14.49193 -14.26245 -14.13275 -13.86738 -13.62278 -13.55057 -13.14298 -13.06824 -12.92186 -12.71988 -12.64962 -12.45183 -12.39987 -12.08247 -12.04888 -11.68723 -11.51480 -11.38857 -11.34049 -11.28096 -11.11902 -10.56979 -10.53237 -9.62363 -9.43114 -9.38896 -8.21061 -6.31969 0.02637 0.64122 1.05030 1.39405 1.39586 1.53104 1.81380 2.39850 2.69789 2.89709 3.12302 3.35047 3.49272 3.70201 3.87512 3.99429 4.08695 4.15940 4.19528 4.21410 4.25527 4.30791 4.43687 4.52454 4.61209 4.65902 4.67107 4.69816 4.74011 4.80041 4.88297 4.96024 4.99700 5.09918 5.11479 5.19363 5.24922 5.33787 5.50711 5.55544 5.71347 5.84282 5.95878 6.02421 6.18106 6.25492 6.46855 6.84794 7.37421 8.91047 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009656 B = 0.003331 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.999393 B = 8403.402373 C =10649.751876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.087 4.087 11 C 0.065 3.935 12 N -0.533 5.533 13 C 0.013 3.987 14 C 0.068 3.932 15 O -0.399 6.399 16 C 0.069 3.931 17 C 0.056 3.944 18 H 0.040 0.960 19 C -0.133 4.133 20 C 0.186 3.814 21 H 0.133 0.867 22 O -0.562 6.562 23 C -0.224 4.224 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.214 4.214 27 S 0.076 5.924 28 H 0.263 0.737 29 H -0.012 1.012 30 H -0.008 1.008 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.019 0.981 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.379 0.621 44 H 0.161 0.839 45 H 0.164 0.836 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.736 -22.321 7.760 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.125 4.125 11 C -0.063 4.063 12 N -0.258 5.258 13 C -0.115 4.115 14 C -0.009 4.009 15 O -0.318 6.318 16 C -0.007 4.007 17 C -0.053 4.053 18 H 0.058 0.942 19 C -0.171 4.171 20 C 0.125 3.875 21 H 0.150 0.850 22 O -0.368 6.368 23 C -0.341 4.341 24 C -0.162 4.162 25 C -0.172 4.172 26 C -0.350 4.350 27 S 0.340 5.660 28 H 0.072 0.928 29 H 0.006 0.994 30 H 0.010 0.990 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.228 0.772 44 H 0.179 0.821 45 H 0.181 0.819 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.180 -22.063 7.030 23.186 hybrid contribution -0.093 1.258 0.458 1.342 sum 1.088 -20.806 7.488 22.139 Atomic orbital electron populations 1.70102 1.07791 1.27685 1.51786 1.25975 0.95761 1.03339 0.94722 0.85408 0.79122 0.78783 0.77802 1.18556 1.20374 1.20319 1.21699 0.93501 0.92316 1.50361 0.92266 1.18956 0.94361 0.93125 0.94609 1.21368 0.97940 0.92485 1.00682 1.22108 0.93732 0.90437 1.00020 1.62294 1.27011 1.02844 1.33649 1.22887 0.97366 1.01138 0.90095 1.22759 0.93131 0.82132 1.02866 1.87948 1.66671 1.35549 1.41646 1.22869 0.92745 0.98181 0.86932 1.22193 0.95516 0.90250 0.97301 0.94162 1.22309 0.99978 0.97611 0.97245 1.20440 0.88219 0.98237 0.80641 0.85001 1.86591 1.38746 1.55690 1.55751 1.25484 0.99984 1.07727 1.00949 1.20417 1.02499 1.02170 0.91140 1.20508 0.94201 1.01696 1.00757 1.25957 1.03455 1.06889 0.98669 1.84420 1.18764 1.57588 1.05276 0.92790 0.99403 0.98994 0.92797 0.93187 0.96321 0.90695 0.95111 0.89376 0.86602 0.91605 0.91322 0.86908 0.91841 0.89208 0.77248 0.82112 0.81859 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.09 -3.63 5.10 30.59 0.16 -3.47 16 11 C 0.06 2.26 4.75 86.30 0.41 2.67 16 12 N -0.53 -15.48 4.53 -869.99 -3.94 -19.42 16 13 C 0.01 0.36 5.44 86.31 0.47 0.83 16 14 C 0.07 1.50 7.01 72.02 0.50 2.00 16 15 O -0.40 -9.74 10.83 -148.98 -1.61 -11.35 16 16 C 0.07 1.45 5.91 72.02 0.43 1.87 16 17 C 0.06 1.37 2.01 44.93 0.09 1.46 16 18 H 0.04 1.13 7.76 -2.39 -0.02 1.11 16 19 C -0.13 -2.91 4.20 30.60 0.13 -2.78 16 20 C 0.19 3.47 3.23 29.85 0.10 3.56 16 21 H 0.13 2.02 6.33 -2.39 -0.02 2.01 16 22 O -0.56 -12.06 12.77 -148.98 -1.90 -13.96 16 23 C -0.22 -4.21 5.52 24.59 0.14 -4.07 16 24 C -0.13 -2.13 10.05 21.22 0.21 -1.92 16 25 C -0.14 -2.14 10.18 21.22 0.22 -1.93 16 26 C -0.21 -3.50 11.23 66.72 0.75 -2.75 16 27 S 0.08 1.48 22.43 -56.49 -1.27 0.21 16 28 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 29 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 2.04 6.54 -2.39 -0.02 2.02 16 33 H 0.02 0.69 8.11 -2.39 -0.02 0.67 16 34 H 0.07 2.61 5.68 -2.39 -0.01 2.60 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 2.47 6.41 -2.39 -0.02 2.45 16 37 H 0.12 2.06 8.14 -2.39 -0.02 2.05 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.11 1.92 6.56 -2.39 -0.02 1.90 16 41 H 0.06 1.61 6.03 -2.39 -0.01 1.60 16 42 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.38 7.21 8.27 -74.05 -0.61 6.60 16 44 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 46 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -68.39 375.92 -1.61 -70.00 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.36 Total: 18.25 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 4.44 Total: -33.37 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -3.66 Total: -76.29 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -3.51 Total: -25.32 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -1.27 Total: 0.21 kcal Total: -68.39 -1.61 -70.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121867320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.685 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds