Wall clock time and date at job start Tue Mar 31 2020 14:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38278 * 119.92958 * 2 1 4 4 C 1.38109 * 120.07509 * 179.97438 * 3 2 1 5 5 C 1.38892 * 119.92430 * 359.97438 * 4 3 2 6 6 N 1.39853 * 120.07312 * 180.02562 * 5 4 3 7 7 C 1.46496 * 120.00275 * 173.17207 * 6 5 4 8 8 C 1.50701 * 109.47135 * 284.40598 * 7 6 5 9 9 H 1.08003 * 119.99863 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00078 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99809 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99824 * 180.02562 * 10 8 7 13 13 H 1.48491 * 109.47530 * 90.00037 * 12 10 8 14 14 H 1.48504 * 109.46647 * 209.99965 * 12 10 8 15 15 H 1.48503 * 109.47006 * 329.99615 * 12 10 8 16 16 C 1.34780 * 119.99929 * 353.17394 * 6 5 4 17 17 O 1.21605 * 119.99702 * 6.65580 * 16 6 5 18 18 C 1.47505 * 120.00102 * 186.65913 * 16 6 5 19 19 C 1.39717 * 120.19317 * 325.51467 * 18 16 6 20 20 C 1.37784 * 119.90553 * 180.25806 * 19 18 16 21 21 C 1.38546 * 120.30358 * 359.43962 * 20 19 18 22 22 C 1.50696 * 119.80595 * 180.30476 * 21 20 19 23 23 C 1.38055 * 120.38850 * 0.56302 * 21 20 19 24 24 C 1.38706 * 120.09035 * 359.72058 * 23 21 20 25 25 O 1.35655 * 120.15004 * 180.02562 * 24 23 21 26 26 C 1.38886 * 119.85872 * 0.26865 * 5 4 3 27 27 C 1.38115 * 119.92621 * 359.48033 * 26 5 4 28 28 H 1.08992 * 109.47217 * 90.00013 * 1 2 3 29 29 H 1.09003 * 109.47176 * 210.00024 * 1 2 3 30 30 H 1.09002 * 109.47377 * 329.99798 * 1 2 3 31 31 H 1.07995 * 119.96642 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.04260 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47463 * 44.40831 * 7 6 5 34 34 H 1.09004 * 109.47359 * 164.40811 * 7 6 5 35 35 H 0.97003 * 119.99791 * 179.97438 * 11 10 8 36 36 H 1.07999 * 120.04323 * 359.97438 * 19 18 16 37 37 H 1.08002 * 119.84391 * 179.72026 * 20 19 18 38 38 H 1.09001 * 109.47251 * 270.25468 * 22 21 20 39 39 H 1.09000 * 109.47019 * 30.25607 * 22 21 20 40 40 H 1.08999 * 109.47376 * 150.25536 * 22 21 20 41 41 H 1.08007 * 119.95972 * 179.74346 * 23 21 20 42 42 H 0.96705 * 113.99724 * 269.96801 * 25 24 23 43 43 H 1.07997 * 120.04031 * 179.72561 * 26 5 4 44 44 H 1.08000 * 119.96579 * 180.22886 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5779 1.2019 0.0005 5 6 4.2739 -0.0001 0.0016 6 7 5.6724 -0.0002 0.0027 7 6 6.4048 -1.2598 0.1547 8 6 6.3487 -1.7030 1.5939 9 1 5.8200 -1.1063 2.3225 10 6 6.9714 -2.8709 1.9804 11 7 7.6148 -3.5977 1.0931 12 14 6.9013 -3.4205 3.7644 13 1 5.7085 -4.2805 3.9709 14 1 8.1285 -4.1889 4.0941 15 1 6.8113 -2.2291 4.6463 16 6 6.3465 1.1587 -0.1360 17 8 5.7446 2.2153 -0.1405 18 6 7.8142 1.1452 -0.2825 19 6 8.5785 0.1870 0.3881 20 6 9.9495 0.1832 0.2512 21 6 10.5739 1.1186 -0.5579 22 6 12.0736 1.0998 -0.7049 23 6 9.8308 2.0710 -1.2261 24 6 8.4501 2.0934 -1.0955 25 8 7.7186 3.0284 -1.7519 26 6 3.5780 -1.2020 -0.0035 27 6 2.1968 -1.1986 0.0012 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.6552 2.1327 -0.0004 32 1 4.1163 2.1382 0.0001 33 1 5.9512 -2.0225 -0.4783 34 1 7.4439 -1.1139 -0.1403 35 1 8.0532 -4.4192 1.3651 36 1 8.0956 -0.5469 1.0164 37 1 10.5397 -0.5552 0.7736 38 1 12.5220 1.7280 0.0648 39 1 12.4365 0.0777 -0.5967 40 1 12.3470 1.4802 -1.6891 41 1 10.3250 2.7995 -1.8519 42 1 7.5804 3.8433 -1.2500 43 1 4.1161 -2.1383 -0.0072 44 1 1.6550 -2.1328 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179484180.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:17 Heat of formation + Delta-G solvation = -13.802254 kcal Electronic energy + Delta-G solvation = -27613.281411 eV Core-core repulsion = 23882.159997 eV Total energy + Delta-G solvation = -3731.121414 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17033 -40.53610 -39.15589 -38.08993 -37.04009 -34.85211 -34.00049 -32.36007 -31.78583 -30.96742 -29.51507 -28.71940 -26.91243 -25.33362 -23.97015 -23.59380 -23.01329 -22.12165 -20.98801 -18.94359 -18.71246 -18.35691 -18.14448 -16.91455 -16.77050 -16.55740 -16.39976 -16.12041 -15.80424 -15.35483 -15.01651 -14.81204 -14.48982 -14.44885 -14.37101 -14.33608 -14.14208 -13.57530 -13.29112 -13.09971 -13.05301 -12.95375 -12.84586 -12.76044 -12.63015 -12.35778 -12.26190 -12.05238 -11.89440 -11.84600 -11.36982 -10.81266 -10.68671 -10.25978 -9.79426 -9.68801 -9.59899 -8.67085 -8.26449 -6.45369 -0.23040 0.31109 0.49850 0.56599 1.37238 1.40126 1.49152 1.75737 2.02110 2.35222 2.65242 2.98854 2.99934 3.21523 3.44378 3.94486 3.99415 4.07226 4.10877 4.28243 4.29139 4.39439 4.47571 4.54075 4.62447 4.63498 4.85481 4.88111 4.89556 4.91249 4.93310 5.05731 5.09458 5.15902 5.20193 5.24914 5.31803 5.37050 5.49439 5.55318 5.59096 5.61309 5.73402 5.81054 5.87330 5.90102 6.31333 6.40289 6.67177 6.75915 7.07952 7.25778 8.75729 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009314 B = 0.005502 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.589296 B = 5088.001718 C = 7674.161303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.122 4.122 3 C -0.107 4.107 4 C -0.193 4.193 5 C 0.134 3.866 6 N -0.536 5.536 7 C 0.217 3.783 8 C -0.545 4.545 9 H 0.046 0.954 10 C 0.037 3.963 11 N -0.904 5.904 12 Si 0.953 3.047 13 H -0.276 1.276 14 H -0.271 1.271 15 H -0.275 1.275 16 C 0.556 3.444 17 O -0.548 6.548 18 C -0.201 4.201 19 C -0.083 4.083 20 C -0.149 4.149 21 C -0.037 4.037 22 C -0.113 4.113 23 C -0.162 4.162 24 C 0.157 3.843 25 O -0.499 6.499 26 C -0.155 4.155 27 C -0.105 4.105 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.144 0.856 32 H 0.168 0.832 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.273 0.727 36 H 0.159 0.841 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.163 0.837 42 H 0.409 0.591 43 H 0.114 0.886 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 8.127 -2.861 8.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.123 4.123 3 C -0.125 4.125 4 C -0.212 4.212 5 C 0.039 3.961 6 N -0.255 5.255 7 C 0.098 3.902 8 C -0.583 4.583 9 H 0.064 0.936 10 C -0.165 4.165 11 N -0.542 5.542 12 Si 0.778 3.222 13 H -0.201 1.201 14 H -0.196 1.196 15 H -0.200 1.200 16 C 0.349 3.651 17 O -0.431 6.431 18 C -0.205 4.205 19 C -0.101 4.101 20 C -0.167 4.167 21 C -0.038 4.038 22 C -0.169 4.169 23 C -0.180 4.180 24 C 0.111 3.889 25 O -0.312 6.312 26 C -0.175 4.175 27 C -0.124 4.124 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.162 0.838 32 H 0.184 0.816 33 H 0.032 0.968 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.176 0.824 37 H 0.157 0.843 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.180 0.820 42 H 0.269 0.731 43 H 0.132 0.868 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.322 8.060 -3.343 8.825 hybrid contribution -0.134 -0.573 1.279 1.408 sum 1.189 7.487 -2.063 7.856 Atomic orbital electron populations 1.20730 0.88501 1.03497 1.02968 1.20259 0.97882 0.92386 1.01803 1.21244 0.92876 0.98677 0.99718 1.22765 0.95821 0.99248 1.03414 1.18341 0.82365 0.95378 1.00008 1.45806 1.04870 1.09649 1.65130 1.20206 0.93930 0.79161 0.96908 1.21286 1.35265 1.08109 0.93626 0.93618 1.25522 0.94034 0.95541 1.01445 1.69997 1.33659 1.15103 1.35392 0.85626 0.78165 0.78384 0.80028 1.20123 1.19558 1.19954 1.18652 0.88108 0.82824 0.75546 1.90258 1.68615 1.31602 1.52597 1.20267 0.92155 1.02649 1.05383 1.22482 0.95418 0.95163 0.97002 1.21254 0.93491 1.00691 1.01292 1.20404 0.98295 0.92246 0.92814 1.20937 0.87823 1.04061 1.04106 1.21420 0.91031 1.02188 1.03372 1.18562 0.90121 0.89704 0.90490 1.84618 1.73648 1.28998 1.43918 1.21031 0.95429 0.96396 1.04681 1.21063 0.92285 0.98987 1.00049 0.90338 0.90815 0.90589 0.83819 0.81616 0.96821 0.90672 0.91731 0.82443 0.84281 0.88975 0.90447 0.89494 0.81972 0.73131 0.86788 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 10.01 71.23 0.71 -1.44 16 2 C -0.12 -3.84 5.88 -19.84 -0.12 -3.95 16 3 C -0.11 -3.65 9.69 22.25 0.22 -3.44 16 4 C -0.19 -8.16 9.06 22.40 0.20 -7.96 16 5 C 0.13 6.21 6.35 38.17 0.24 6.45 16 6 N -0.54 -26.02 2.73 -638.87 -1.75 -27.76 16 7 C 0.22 11.01 4.05 85.63 0.35 11.36 16 8 C -0.54 -28.76 7.16 25.60 0.18 -28.58 16 9 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 10 C 0.04 1.92 5.46 84.66 0.46 2.38 16 11 N -0.90 -47.71 13.29 21.45 0.28 -47.43 16 12 Si 0.95 41.21 29.54 68.60 2.03 43.24 16 13 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 14 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 C 0.56 25.85 7.22 86.69 0.63 26.47 16 17 O -0.55 -25.39 12.32 13.13 0.16 -25.23 16 18 C -0.20 -8.32 5.51 -20.01 -0.11 -8.43 16 19 C -0.08 -3.38 7.41 22.52 0.17 -3.21 16 20 C -0.15 -4.90 9.67 22.24 0.22 -4.69 16 21 C -0.04 -0.98 5.88 -19.84 -0.12 -1.10 16 22 C -0.11 -1.92 10.00 71.23 0.71 -1.20 16 23 C -0.16 -4.40 9.62 22.34 0.21 -4.19 16 24 C 0.16 5.43 6.68 22.85 0.15 5.58 16 25 O -0.50 -16.27 12.12 -72.53 -0.88 -17.15 16 26 C -0.15 -6.72 9.01 22.40 0.20 -6.52 16 27 C -0.11 -3.71 9.69 22.25 0.22 -3.49 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 30 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 31 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 32 H 0.17 7.40 4.52 -62.83 -0.28 7.12 16 33 H 0.01 0.75 6.76 -2.39 -0.02 0.74 16 34 H 0.08 3.84 3.80 -2.57 -0.01 3.83 16 35 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 36 H 0.16 7.46 3.95 -2.91 -0.01 7.45 16 37 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 40 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 41 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 42 H 0.41 10.11 9.06 -74.05 -0.67 9.44 16 43 H 0.11 5.35 6.19 -2.91 -0.02 5.33 16 44 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -65.09 360.92 4.48 -60.61 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: 0.11 Total: 39.68 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 4.53 Total: -25.96 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -1.46 Total: -75.19 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -0.72 Total: -42.38 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -65.09 4.48 -60.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179484180.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.809 kcal (2) G-P(sol) polarization free energy of solvation -65.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds