Wall clock time and date at job start Tue Mar 31 2020 14:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38236 * 120.00393 * 2 1 4 4 C 1.38233 * 120.00175 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00198 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99774 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47511 * 23.94694 * 6 5 4 8 8 N 1.46902 * 109.46682 * 143.94490 * 6 5 4 9 9 C 1.46893 * 111.00366 * 232.02093 * 8 6 5 10 10 C 1.52999 * 109.47576 * 173.91770 * 9 8 6 11 11 C 1.50705 * 109.47298 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99631 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99799 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00121 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99551 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47268 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47179 * 120.00210 * 15 13 11 18 18 H 1.48505 * 109.47266 * 239.99944 * 15 13 11 19 19 C 1.52999 * 109.47274 * 263.94162 * 6 5 4 20 20 H 1.09000 * 109.46713 * 54.57910 * 19 6 5 21 21 C 1.52992 * 109.47294 * 294.58211 * 19 6 5 22 22 S 1.81399 * 109.47095 * 174.57522 * 19 6 5 23 23 C 1.81398 * 101.92207 * 299.93427 * 22 19 6 24 24 O 1.42098 * 108.57761 * 185.44552 * 22 19 6 25 25 O 1.42102 * 108.57538 * 54.42316 * 22 19 6 26 26 C 1.38233 * 119.99873 * 0.25902 * 5 4 3 27 27 C 1.38234 * 119.99957 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47175 * 89.99686 * 1 2 3 29 29 H 1.09001 * 109.47274 * 209.99580 * 1 2 3 30 30 H 1.09000 * 109.47090 * 329.99705 * 1 2 3 31 31 H 1.08001 * 119.99643 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.99476 * 179.97438 * 4 3 2 33 33 H 1.00906 * 111.00094 * 108.06581 * 8 6 5 34 34 H 1.09010 * 109.46987 * 293.92020 * 9 8 6 35 35 H 1.09000 * 109.47412 * 53.91716 * 9 8 6 36 36 H 1.08997 * 109.47123 * 300.00433 * 10 9 8 37 37 H 1.09002 * 109.46772 * 60.00107 * 10 9 8 38 38 H 0.96993 * 119.99633 * 179.97438 * 14 13 11 39 39 H 1.09006 * 109.47248 * 300.37665 * 21 19 6 40 40 H 1.09000 * 109.47437 * 60.38244 * 21 19 6 41 41 H 1.09008 * 109.47123 * 180.38310 * 21 19 6 42 42 H 1.08996 * 109.47538 * 301.82751 * 23 22 19 43 43 H 1.08998 * 109.46995 * 61.83033 * 23 22 19 44 44 H 1.09005 * 109.46795 * 181.82715 * 23 22 19 45 45 H 1.07997 * 120.00396 * 179.72913 * 26 5 4 46 46 H 1.08000 * 120.00022 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 0.0000 -0.0028 7 1 6.1423 0.9389 0.4145 8 7 6.2689 -1.1201 0.8115 9 6 7.2408 -0.6583 1.8115 10 6 7.6131 -1.8197 2.7353 11 6 8.6107 -1.3459 3.7608 12 1 8.9453 -0.3190 3.7545 13 6 9.0954 -2.2232 4.7076 14 7 8.6875 -3.4735 4.7155 15 14 10.3313 -1.6358 5.9792 16 1 10.6248 -0.1972 5.7565 17 1 9.7669 -1.8205 7.3403 18 1 11.5843 -2.4226 5.8520 19 6 6.2876 -0.1516 -1.4377 20 1 5.8466 0.6244 -2.0634 21 6 5.8915 -1.5276 -1.9766 22 16 8.0944 0.0090 -1.4585 23 6 8.3297 1.6806 -0.7945 24 8 8.5348 -0.0077 -2.8094 25 8 8.6425 -0.9250 -0.5385 26 6 3.5805 -1.1972 -0.0076 27 6 2.1981 -1.1972 -0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1324 0.0004 32 1 4.1205 2.1324 -0.0010 33 1 6.6644 -1.8439 0.2302 34 1 8.1358 -0.2939 1.3071 35 1 6.8018 0.1475 2.3998 36 1 6.7182 -2.1841 3.2396 37 1 8.0522 -2.6254 2.1470 38 1 9.0288 -4.0907 5.3814 39 1 6.3269 -2.3036 -1.3469 40 1 4.8056 -1.6215 -1.9705 41 1 6.2600 -1.6382 -2.9965 42 1 7.8016 2.3985 -1.4219 43 1 7.9361 1.7269 0.2209 44 1 9.3929 1.9207 -0.7833 45 1 4.1204 -2.1325 -0.0128 46 1 1.6581 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280953554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:03 Heat of formation + Delta-G solvation = -44.770453 kcal Electronic energy + Delta-G solvation = -26468.276882 eV Core-core repulsion = 22871.256537 eV Total energy + Delta-G solvation = -3597.020345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.84411 -37.68436 -36.75177 -36.00633 -33.85260 -32.41709 -32.02050 -30.88453 -29.84775 -29.04221 -27.38336 -25.36492 -24.00866 -22.46706 -22.12613 -20.54083 -20.25214 -18.76343 -17.07281 -16.57316 -16.21568 -16.10707 -15.92791 -15.43617 -15.13655 -14.98705 -14.36801 -14.23572 -13.82565 -13.59502 -13.41169 -13.28692 -13.21780 -13.10312 -12.95507 -12.66014 -12.32408 -12.13704 -12.03531 -11.97564 -11.87651 -11.64116 -11.40615 -11.26215 -11.16001 -10.91846 -10.88121 -10.82498 -10.51374 -10.22504 -9.85624 -9.31847 -9.03570 -8.81813 -8.41680 -8.26454 -7.88160 -5.90436 -3.91422 -0.10971 1.37419 1.50202 2.61376 3.36351 3.43280 3.46606 3.53593 3.68136 3.95922 4.28016 4.41414 4.52066 4.66235 4.69059 4.80588 4.85797 4.90259 4.93218 5.07204 5.12293 5.16033 5.36905 5.45176 5.46048 5.46637 5.53267 5.58734 5.65462 5.71232 5.80518 5.93870 6.09123 6.17055 6.30839 6.45351 6.55282 6.64861 6.74130 7.07823 7.11855 7.45372 7.78040 7.85763 8.05756 8.18048 8.53731 9.15646 9.70898 11.21357 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.004310 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.805262 B = 6495.283556 C = 8402.680082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.125 4.125 4 C -0.118 4.118 5 C -0.060 4.060 6 C 0.138 3.862 7 H 0.083 0.917 8 N -0.682 5.682 9 C 0.053 3.947 10 C 0.032 3.968 11 C -0.515 4.515 12 H 0.053 0.947 13 C 0.057 3.943 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.593 4.593 20 H 0.139 0.861 21 C -0.144 4.144 22 S 2.404 3.596 23 C -0.660 4.660 24 O -0.945 6.945 25 O -0.907 6.907 26 C -0.079 4.079 27 C -0.126 4.126 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.348 0.652 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.258 0.742 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.494 10.433 -15.180 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.062 4.062 6 C 0.026 3.974 7 H 0.101 0.899 8 N -0.317 5.317 9 C -0.075 4.075 10 C -0.006 4.006 11 C -0.554 4.554 12 H 0.071 0.929 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.718 3.282 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.703 4.703 20 H 0.157 0.843 21 C -0.202 4.202 22 S 2.586 3.414 23 C -0.809 4.809 24 O -0.942 6.942 25 O -0.904 6.904 26 C -0.097 4.097 27 C -0.144 4.144 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.171 0.829 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.144 0.856 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.312 9.666 -14.930 21.632 hybrid contribution 0.845 1.157 0.516 1.523 sum -11.467 10.823 -14.414 21.363 Atomic orbital electron populations 1.20763 0.91647 1.02589 1.01911 1.19872 0.95773 0.93377 1.00403 1.20875 0.93982 0.97275 1.02198 1.20950 0.94218 0.97329 1.01136 1.19618 0.94043 0.93190 0.99348 1.20299 0.93246 0.96804 0.87011 0.89924 1.60766 1.43703 1.09789 1.17468 1.22516 0.91609 1.00641 0.92740 1.18958 0.96206 0.92486 0.92933 1.21197 1.24619 0.96280 1.13265 0.92888 1.24976 0.96726 0.94936 0.97759 1.69983 1.44070 1.03769 1.35463 0.86581 0.81358 0.78758 0.81511 1.19879 1.21137 1.21085 1.30741 1.25130 1.08103 1.06333 0.84333 1.21737 1.05122 0.92071 1.01275 1.08502 0.78326 0.78644 0.75907 1.30329 1.12255 1.24333 1.14027 1.93571 1.79068 1.86728 1.34800 1.93733 1.75086 1.58143 1.63394 1.21050 0.93339 0.98522 0.96798 1.21067 0.94399 0.97319 1.01576 0.91551 0.91668 0.91837 0.86552 0.86497 0.82862 0.94034 0.92865 0.96049 0.96148 0.93198 0.90223 0.89230 0.90952 0.85568 0.84783 0.84958 0.85094 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 2 C -0.09 -1.02 5.88 -104.63 -0.62 -1.63 16 3 C -0.13 -1.33 9.70 -39.58 -0.38 -1.71 16 4 C -0.12 -1.31 9.68 -39.58 -0.38 -1.70 16 5 C -0.06 -0.75 4.74 -104.63 -0.50 -1.25 16 6 C 0.14 1.74 2.05 -68.87 -0.14 1.59 16 7 H 0.08 0.92 5.60 -51.93 -0.29 0.63 16 8 N -0.68 -11.37 5.05 -107.96 -0.54 -11.92 16 9 C 0.05 1.07 4.71 -3.83 -0.02 1.05 16 10 C 0.03 0.84 5.28 -27.88 -0.15 0.69 16 11 C -0.51 -14.82 9.11 -34.44 -0.31 -15.14 16 12 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 15 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 19 C -0.59 -6.17 2.51 -26.74 -0.07 -6.23 16 20 H 0.14 1.02 8.14 -51.92 -0.42 0.60 16 21 C -0.14 -1.51 8.24 37.15 0.31 -1.21 16 22 S 2.40 29.60 4.71 -107.50 -0.51 29.09 16 23 C -0.66 -5.99 10.09 101.05 1.02 -4.97 16 24 O -0.94 -13.91 18.10 -57.83 -1.05 -14.96 16 25 O -0.91 -15.39 13.32 -57.83 -0.77 -16.16 16 26 C -0.08 -1.01 7.37 -39.58 -0.29 -1.30 16 27 C -0.13 -1.46 9.70 -39.58 -0.38 -1.84 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.35 5.77 4.77 -39.29 -0.19 5.58 16 34 H 0.04 0.82 5.16 -51.92 -0.27 0.55 16 35 H 0.05 1.06 8.02 -51.93 -0.42 0.64 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.08 0.91 6.11 -51.93 -0.32 0.59 16 40 H 0.09 0.87 5.87 -51.93 -0.30 0.57 16 41 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 42 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.13 1.20 6.47 -51.92 -0.34 0.87 16 44 H 0.13 1.13 8.14 -51.92 -0.42 0.70 16 45 H 0.13 1.70 7.03 -52.49 -0.37 1.33 16 46 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -36.43 372.27 -10.29 -46.72 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -7.10 Total: 3.90 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: -1.65 Total: -32.62 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.19 Total: -38.63 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.82 Total: -31.12 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 29.60 SS G_CDS: -0.51 Total: 29.09 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.43 -10.29 -46.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280953554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.954 kcal (2) G-P(sol) polarization free energy of solvation -36.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds