Wall clock time and date at job start Tue Mar 31 2020 14:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38236 * 120.00393 * 2 1 4 4 C 1.38233 * 120.00175 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00198 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99774 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47511 * 23.94694 * 6 5 4 8 8 N 1.46902 * 109.46682 * 143.94490 * 6 5 4 9 9 C 1.46893 * 111.00366 * 232.02093 * 8 6 5 10 10 C 1.52999 * 109.47576 * 173.91770 * 9 8 6 11 11 C 1.50705 * 109.47298 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99631 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99799 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00121 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99551 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47268 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47179 * 120.00210 * 15 13 11 18 18 H 1.48505 * 109.47266 * 239.99944 * 15 13 11 19 19 C 1.52999 * 109.47274 * 263.94162 * 6 5 4 20 20 H 1.09000 * 109.46713 * 54.57910 * 19 6 5 21 21 C 1.52992 * 109.47294 * 294.58211 * 19 6 5 22 22 S 1.81399 * 109.47095 * 174.57522 * 19 6 5 23 23 C 1.81398 * 101.92207 * 299.93427 * 22 19 6 24 24 O 1.42098 * 108.57761 * 185.44552 * 22 19 6 25 25 O 1.42102 * 108.57538 * 54.42316 * 22 19 6 26 26 C 1.38233 * 119.99873 * 0.25902 * 5 4 3 27 27 C 1.38234 * 119.99957 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47175 * 89.99686 * 1 2 3 29 29 H 1.09001 * 109.47274 * 209.99580 * 1 2 3 30 30 H 1.09000 * 109.47090 * 329.99705 * 1 2 3 31 31 H 1.08001 * 119.99643 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.99476 * 179.97438 * 4 3 2 33 33 H 1.00906 * 111.00094 * 108.06581 * 8 6 5 34 34 H 1.09010 * 109.46987 * 293.92020 * 9 8 6 35 35 H 1.09000 * 109.47412 * 53.91716 * 9 8 6 36 36 H 1.08997 * 109.47123 * 300.00433 * 10 9 8 37 37 H 1.09002 * 109.46772 * 60.00107 * 10 9 8 38 38 H 0.96993 * 119.99633 * 179.97438 * 14 13 11 39 39 H 1.09006 * 109.47248 * 300.37665 * 21 19 6 40 40 H 1.09000 * 109.47437 * 60.38244 * 21 19 6 41 41 H 1.09008 * 109.47123 * 180.38310 * 21 19 6 42 42 H 1.08996 * 109.47538 * 301.82751 * 23 22 19 43 43 H 1.08998 * 109.46995 * 61.83033 * 23 22 19 44 44 H 1.09005 * 109.46795 * 181.82715 * 23 22 19 45 45 H 1.07997 * 120.00396 * 179.72913 * 26 5 4 46 46 H 1.08000 * 120.00022 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 0.0000 -0.0028 7 1 6.1423 0.9389 0.4145 8 7 6.2689 -1.1201 0.8115 9 6 7.2408 -0.6583 1.8115 10 6 7.6131 -1.8197 2.7353 11 6 8.6107 -1.3459 3.7608 12 1 8.9453 -0.3190 3.7545 13 6 9.0954 -2.2232 4.7076 14 7 8.6875 -3.4735 4.7155 15 14 10.3313 -1.6358 5.9792 16 1 10.6248 -0.1972 5.7565 17 1 9.7669 -1.8205 7.3403 18 1 11.5843 -2.4226 5.8520 19 6 6.2876 -0.1516 -1.4377 20 1 5.8466 0.6244 -2.0634 21 6 5.8915 -1.5276 -1.9766 22 16 8.0944 0.0090 -1.4585 23 6 8.3297 1.6806 -0.7945 24 8 8.5348 -0.0077 -2.8094 25 8 8.6425 -0.9250 -0.5385 26 6 3.5805 -1.1972 -0.0076 27 6 2.1981 -1.1972 -0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1324 0.0004 32 1 4.1205 2.1324 -0.0010 33 1 6.6644 -1.8439 0.2302 34 1 8.1358 -0.2939 1.3071 35 1 6.8018 0.1475 2.3998 36 1 6.7182 -2.1841 3.2396 37 1 8.0522 -2.6254 2.1470 38 1 9.0288 -4.0907 5.3814 39 1 6.3269 -2.3036 -1.3469 40 1 4.8056 -1.6215 -1.9705 41 1 6.2600 -1.6382 -2.9965 42 1 7.8016 2.3985 -1.4219 43 1 7.9361 1.7269 0.2209 44 1 9.3929 1.9207 -0.7833 45 1 4.1204 -2.1325 -0.0128 46 1 1.6581 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280953554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:02 Heat of formation + Delta-G solvation = -70.046899 kcal Electronic energy + Delta-G solvation = -26469.372951 eV Core-core repulsion = 22871.256537 eV Total energy + Delta-G solvation = -3598.116414 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76083 -38.74240 -37.79212 -37.08179 -35.65598 -33.91900 -33.07340 -31.72728 -30.79917 -30.47511 -28.48208 -26.38770 -25.73806 -23.41490 -23.06488 -22.32705 -21.16543 -19.75032 -18.50434 -17.93421 -17.56225 -17.14300 -16.88862 -16.46370 -16.42014 -16.16645 -15.82687 -15.22663 -14.96190 -14.53871 -14.44105 -14.21315 -14.18868 -14.02810 -13.98727 -13.84393 -13.63559 -13.26051 -13.18924 -13.00725 -12.91825 -12.84597 -12.77973 -12.63605 -12.44429 -12.24558 -12.13776 -12.00618 -11.71115 -11.65106 -11.39030 -11.20340 -11.00577 -10.51306 -9.67680 -9.28017 -9.22922 -8.14734 -6.24861 -1.02775 0.51842 0.64509 1.40689 1.42086 1.54646 1.73878 2.43347 2.62438 2.79053 3.05769 3.19008 3.26341 3.55633 3.64946 3.91716 4.01342 4.05508 4.13792 4.16466 4.24694 4.28811 4.32119 4.60396 4.63775 4.64786 4.72348 4.77102 4.82155 4.88474 4.93935 4.99184 5.04550 5.10006 5.27032 5.31226 5.36388 5.51499 5.62903 5.76183 5.81164 5.82558 5.91325 6.19556 6.24695 6.36568 6.53477 6.93525 7.43248 8.98214 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.004310 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.805262 B = 6495.283556 C = 8402.680082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.130 4.130 4 C -0.119 4.119 5 C -0.075 4.075 6 C 0.137 3.863 7 H 0.105 0.895 8 N -0.693 5.693 9 C 0.068 3.932 10 C 0.037 3.963 11 C -0.536 4.536 12 H 0.064 0.936 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.965 3.035 16 H -0.258 1.258 17 H -0.278 1.278 18 H -0.281 1.281 19 C -0.574 4.574 20 H 0.181 0.819 21 C -0.150 4.150 22 S 2.393 3.607 23 C -0.646 4.646 24 O -0.977 6.977 25 O -0.967 6.967 26 C -0.099 4.099 27 C -0.140 4.140 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.345 0.655 34 H 0.050 0.950 35 H 0.062 0.938 36 H -0.012 1.012 37 H -0.017 1.017 38 H 0.261 0.739 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.168 0.832 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.115 0.885 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.442 14.112 -15.496 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.148 4.148 4 C -0.137 4.137 5 C -0.076 4.076 6 C 0.026 3.974 7 H 0.123 0.877 8 N -0.327 5.327 9 C -0.060 4.060 10 C 0.000 4.000 11 C -0.574 4.574 12 H 0.082 0.918 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.790 3.210 16 H -0.181 1.181 17 H -0.204 1.204 18 H -0.207 1.207 19 C -0.686 4.686 20 H 0.198 0.802 21 C -0.208 4.208 22 S 2.581 3.419 23 C -0.799 4.799 24 O -0.974 6.974 25 O -0.964 6.964 26 C -0.117 4.117 27 C -0.158 4.158 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.006 0.994 37 H 0.002 0.998 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.101 0.899 42 H 0.186 0.814 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.133 0.867 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.257 13.326 -15.277 24.222 hybrid contribution 1.015 0.018 0.572 1.165 sum -12.242 13.345 -14.705 23.328 Atomic orbital electron populations 1.20806 0.89824 1.03245 1.02914 1.20232 0.97265 0.93134 0.99327 1.21236 0.94094 0.98152 1.01271 1.21266 0.94679 0.97682 1.00089 1.19626 0.93627 0.93726 1.00665 1.20394 0.93562 0.95956 0.87535 0.87684 1.60599 1.42336 1.11553 1.18228 1.22145 0.93111 0.97936 0.92809 1.18803 0.94208 0.93769 0.93255 1.21682 1.25024 0.96893 1.13818 0.91783 1.26000 0.98914 0.94978 1.00249 1.70139 1.45619 1.05247 1.36567 0.85399 0.78299 0.78971 0.78352 1.18122 1.20390 1.20734 1.30581 1.22997 1.09234 1.05790 0.80184 1.21791 1.05551 0.91964 1.01536 1.08429 0.78899 0.79781 0.74747 1.30194 1.13722 1.21179 1.14787 1.93526 1.80059 1.87734 1.36103 1.93663 1.76862 1.61460 1.64430 1.21069 0.94059 0.98407 0.98162 1.21245 0.94140 0.98398 1.02059 0.90286 0.91567 0.90668 0.84076 0.83722 0.83197 0.93159 0.91977 0.99368 0.99848 0.93019 0.92114 0.88440 0.89867 0.81368 0.84117 0.84156 0.86682 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.23 0.71 -0.82 16 2 C -0.10 -1.94 5.88 -19.87 -0.12 -2.06 16 3 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 4 C -0.12 -2.24 9.68 22.27 0.22 -2.03 16 5 C -0.07 -1.74 4.74 -19.87 -0.09 -1.83 16 6 C 0.14 3.21 2.05 44.17 0.09 3.31 16 7 H 0.11 1.99 5.60 -2.39 -0.01 1.98 16 8 N -0.69 -23.67 5.05 -495.46 -2.50 -26.17 16 9 C 0.07 2.84 4.71 86.30 0.41 3.25 16 10 C 0.04 2.07 5.28 29.85 0.16 2.23 16 11 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16 12 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 13 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 14 N -0.94 -59.44 13.29 21.45 0.28 -59.15 16 15 Si 0.97 45.55 29.54 68.60 2.03 47.57 16 16 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 19 C -0.57 -10.97 2.51 30.59 0.08 -10.89 16 20 H 0.18 1.93 8.14 -2.39 -0.02 1.91 16 21 C -0.15 -3.17 8.24 71.98 0.59 -2.58 16 22 S 2.39 57.17 4.71 -56.49 -0.27 56.90 16 23 C -0.65 -9.52 10.09 113.37 1.14 -8.38 16 24 O -0.98 -28.38 18.10 -127.37 -2.30 -30.69 16 25 O -0.97 -34.19 13.32 -127.37 -1.70 -35.89 16 26 C -0.10 -2.52 7.37 22.27 0.16 -2.36 16 27 C -0.14 -3.19 9.70 22.27 0.22 -2.97 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.89 8.09 -2.39 -0.02 0.88 16 30 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 31 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 32 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 33 H 0.35 12.24 4.77 -89.69 -0.43 11.82 16 34 H 0.05 2.00 5.16 -2.38 -0.01 1.99 16 35 H 0.06 2.43 8.02 -2.39 -0.02 2.41 16 36 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 38 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.06 1.51 6.11 -2.38 -0.01 1.50 16 40 H 0.10 1.90 5.87 -2.39 -0.01 1.88 16 41 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.17 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.14 2.00 6.47 -2.39 -0.02 1.98 16 44 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.12 3.20 7.03 -2.91 -0.02 3.18 16 46 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -83.02 372.27 0.56 -82.45 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.55 Total: 23.28 kcal Atomic # 6 Polarization: -62.79 SS G_CDS: 4.48 Total: -58.31 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -2.22 Total: -85.32 kcal Atomic # 8 Polarization: -62.57 SS G_CDS: -4.00 Total: -66.57 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 57.17 SS G_CDS: -0.27 Total: 56.90 kcal Total: -83.02 0.56 -82.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280953554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.407 kcal (2) G-P(sol) polarization free energy of solvation -83.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds