Wall clock time and date at job start Tue Mar 31 2020 14:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 10 10 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 11 11 N 1.46506 * 109.47077 * 204.99779 * 8 7 2 12 12 S 1.65595 * 120.00189 * 144.99442 * 11 8 7 13 13 O 1.42100 * 104.27726 * 181.07006 * 12 11 8 14 14 O 1.42096 * 104.27931 * 308.93528 * 12 11 8 15 15 C 1.81406 * 104.44637 * 65.00479 * 12 11 8 16 16 C 1.53000 * 109.47209 * 179.97438 * 15 12 11 17 17 C 1.52997 * 109.46961 * 300.00108 * 16 15 12 18 18 C 1.53000 * 109.47016 * 59.99785 * 16 15 12 19 19 C 1.50700 * 109.47103 * 179.97438 * 16 15 12 20 20 H 1.08000 * 119.99997 * 0.02562 * 19 16 15 21 21 C 1.37874 * 119.99782 * 179.97438 * 19 16 15 22 22 N 1.31517 * 120.00157 * 0.02562 * 21 19 16 23 23 Si 1.86805 * 119.99872 * 180.02562 * 21 19 16 24 24 H 1.48497 * 109.47095 * 60.00116 * 23 21 19 25 25 H 1.48502 * 109.47098 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46658 * 300.00036 * 23 21 19 27 27 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 30 30 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 32 32 H 1.08001 * 119.99773 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.00080 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47106 * 299.99743 * 10 8 7 35 35 H 1.09003 * 109.46741 * 60.00291 * 10 8 7 36 36 H 1.08999 * 109.46802 * 179.97438 * 10 8 7 37 37 H 0.97002 * 119.99746 * 325.00388 * 11 8 7 38 38 H 1.08994 * 109.47043 * 299.99788 * 15 12 11 39 39 H 1.09002 * 109.46942 * 59.99545 * 15 12 11 40 40 H 1.08998 * 109.47307 * 59.99997 * 17 16 15 41 41 H 1.09005 * 109.47041 * 180.02562 * 17 16 15 42 42 H 1.09004 * 109.47331 * 299.99427 * 17 16 15 43 43 H 1.09007 * 109.46879 * 60.00073 * 18 16 15 44 44 H 1.09002 * 109.47222 * 179.97438 * 18 16 15 45 45 H 1.08998 * 109.47344 * 300.00059 * 18 16 15 46 46 H 0.97001 * 119.99912 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1969 0.0016 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 1 0.5337 -2.3930 0.6002 10 6 1.0812 -2.8875 -1.4238 11 7 2.2843 -3.5482 0.6005 12 16 1.5965 -4.7446 1.5158 13 8 2.6956 -5.5443 1.9302 14 8 0.7997 -4.0468 2.4631 15 6 0.5475 -5.6585 0.3517 16 6 -0.1507 -6.8048 1.0862 17 6 0.9001 -7.7483 1.6748 18 6 -1.0149 -6.2367 2.2137 19 6 -1.0226 -7.5637 0.1192 20 1 -1.0734 -7.2591 -0.9157 21 6 -1.7548 -8.6474 0.5556 22 7 -1.6926 -9.0186 1.8158 23 14 -2.8351 -9.5885 -0.6431 24 1 -1.9964 -10.1395 -1.7377 25 1 -3.5128 -10.7010 0.0698 26 1 -3.8552 -8.6727 -1.2140 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1326 0.0010 32 1 5.3517 0.0001 0.0024 33 1 4.1206 -2.1322 0.0029 34 1 0.4564 -2.1092 -1.8619 35 1 1.9921 -2.9965 -2.0124 36 1 0.5365 -3.8316 -1.4195 37 1 3.2432 -3.5399 0.4543 38 1 -0.2007 -4.9862 -0.0679 39 1 1.1633 -6.0635 -0.4513 40 1 1.5304 -7.1992 2.3743 41 1 0.4026 -8.5653 2.1977 42 1 1.5157 -8.1531 0.8715 43 1 -1.7635 -5.5645 1.7943 44 1 -1.5127 -7.0533 2.7367 45 1 -0.3845 -5.6876 2.9132 46 1 -2.2080 -9.7808 2.1229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295158897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:34 Heat of formation + Delta-G solvation = -55.775289 kcal Electronic energy + Delta-G solvation = -26681.246837 eV Core-core repulsion = 23083.749286 eV Total energy + Delta-G solvation = -3597.497550 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.97640 -36.63658 -36.28727 -36.10257 -35.29311 -33.08301 -31.68919 -30.81946 -29.22133 -27.10986 -26.61884 -25.71935 -25.23091 -23.89530 -21.93696 -20.72909 -19.59956 -18.79357 -17.64967 -16.85558 -16.02523 -15.82359 -15.42631 -15.34856 -14.89301 -14.74636 -14.38949 -14.26238 -13.60281 -13.47183 -13.28948 -13.08754 -12.99291 -12.56072 -12.43168 -12.25923 -12.06828 -12.06574 -11.86107 -11.63772 -11.43461 -11.18771 -11.06817 -11.05891 -10.94054 -10.72391 -10.69213 -10.40465 -10.27708 -10.10620 -9.73378 -9.65504 -9.31794 -8.94418 -8.71520 -8.69136 -8.40560 -6.03949 -4.16191 0.84748 1.20025 1.23503 3.18126 3.26264 3.32009 3.33331 3.59972 4.28417 4.37199 4.43075 4.65595 4.73738 4.81178 4.86008 5.00800 5.14786 5.16631 5.21042 5.25970 5.36897 5.48899 5.55689 5.57358 5.67163 5.71395 5.77840 5.86740 5.94373 6.04976 6.12032 6.34526 6.35327 6.39667 6.53215 6.69732 6.79257 6.85026 6.90527 7.01760 7.12248 7.31037 7.49866 7.67016 7.97632 8.08862 8.32247 8.82087 9.49270 10.97317 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.003433 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.737191 B = 8155.170465 C = 8670.734630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C -0.119 4.119 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.108 4.108 7 C -0.079 4.079 8 C 0.183 3.817 9 H 0.105 0.895 10 C -0.176 4.176 11 N -1.125 6.125 12 S 2.591 3.409 13 O -0.965 6.965 14 O -0.963 6.963 15 C -0.583 4.583 16 C 0.083 3.917 17 C -0.164 4.164 18 C -0.164 4.164 19 C -0.503 4.503 20 H 0.058 0.942 21 C 0.065 3.935 22 N -0.884 5.884 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.410 0.590 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.027 0.973 41 H 0.095 0.905 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.095 0.905 45 H 0.028 0.972 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.503 17.802 -6.012 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.077 4.077 3 C -0.137 4.137 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.127 4.127 7 C -0.081 4.081 8 C 0.075 3.925 9 H 0.122 0.878 10 C -0.234 4.234 11 N -0.883 5.883 12 S 2.690 3.310 13 O -0.955 6.955 14 O -0.953 6.953 15 C -0.716 4.716 16 C 0.081 3.919 17 C -0.222 4.222 18 C -0.221 4.221 19 C -0.542 4.542 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.522 5.522 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.203 1.203 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.245 0.755 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.046 0.954 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.113 0.887 45 H 0.047 0.953 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.407 17.544 -4.897 19.663 hybrid contribution -0.283 -0.565 -1.440 1.572 sum 7.123 16.979 -6.336 19.473 Atomic orbital electron populations 1.20961 0.91019 1.03565 1.02654 1.19732 0.96225 0.92341 0.99439 1.21002 0.94252 0.97312 1.01095 1.21116 0.94333 0.97977 1.00522 1.21099 0.99837 0.92422 1.00832 1.20915 0.93596 0.98189 0.99955 1.19772 0.93920 0.93944 1.00452 1.19729 0.93259 0.84382 0.95089 0.87750 1.22458 1.02658 1.02893 0.95420 1.56065 1.18031 1.42109 1.72053 1.05676 0.75483 0.73741 0.76149 1.93553 1.52214 1.69072 1.80653 1.93541 1.71394 1.72129 1.58243 1.30633 1.13352 1.12423 1.15224 1.17921 0.92632 0.88344 0.93051 1.22279 0.97324 1.02748 0.99837 1.22277 1.00257 1.01131 0.98479 1.20901 1.25721 1.12699 0.94893 0.92336 1.24935 0.96572 0.96941 0.95252 1.69793 1.41200 1.26862 1.14297 0.86601 0.80581 0.79454 0.81006 1.20284 1.21202 1.20267 0.90730 0.91302 0.90609 0.86020 0.86207 0.86080 0.86013 0.91086 0.91601 0.90765 0.75544 0.86302 0.86152 0.95403 0.88632 0.94469 0.94479 0.88657 0.95339 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.39 36.01 0.34 -0.79 16 2 C -0.08 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 4 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 5 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 6 C -0.11 -1.18 9.29 -39.58 -0.37 -1.55 16 7 C -0.08 -0.93 5.06 -104.63 -0.53 -1.46 16 8 C 0.18 2.27 2.52 -69.08 -0.17 2.09 16 9 H 0.10 1.36 5.50 -51.93 -0.29 1.07 16 10 C -0.18 -1.86 9.46 37.16 0.35 -1.51 16 11 N -1.13 -15.61 5.23 -5.88 -0.03 -15.64 16 12 S 2.59 47.92 4.47 -107.50 -0.48 47.44 16 13 O -0.96 -20.33 15.70 -57.54 -0.90 -21.23 16 14 O -0.96 -20.24 15.01 -57.54 -0.86 -21.10 16 15 C -0.58 -11.08 4.16 37.16 0.15 -10.93 16 16 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 17 C -0.16 -4.03 7.78 37.16 0.29 -3.75 16 18 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 19 C -0.50 -13.01 8.01 -34.44 -0.28 -13.28 16 20 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 21 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 22 N -0.88 -23.98 9.35 55.43 0.52 -23.46 16 23 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.08 0.74 6.02 -51.93 -0.31 0.43 16 30 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 31 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 1.18 6.08 -52.49 -0.32 0.86 16 34 H 0.07 0.64 7.92 -51.93 -0.41 0.23 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.82 5.78 -51.93 -0.30 0.52 16 37 H 0.41 4.88 6.53 -34.47 -0.22 4.65 16 38 H 0.12 2.01 6.77 -51.93 -0.35 1.65 16 39 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 40 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 41 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 45 H 0.03 0.66 5.47 -51.93 -0.28 0.38 16 46 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 362.09 15.07 5.46 5.46 Total: -1.00 -31.94 362.09 -9.96 -41.91 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.75 Total: 8.61 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: -1.89 Total: -37.41 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.49 Total: -39.10 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -1.77 Total: -42.33 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 47.92 SS G_CDS: -0.48 Total: 47.44 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.94 -9.96 -41.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295158897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.870 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds