Wall clock time and date at job start Tue Mar 31 2020 14:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99493 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00052 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 10 10 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 11 11 N 1.46506 * 109.47077 * 204.99779 * 8 7 2 12 12 S 1.65595 * 120.00189 * 144.99442 * 11 8 7 13 13 O 1.42100 * 104.27726 * 181.07006 * 12 11 8 14 14 O 1.42096 * 104.27931 * 308.93528 * 12 11 8 15 15 C 1.81406 * 104.44637 * 65.00479 * 12 11 8 16 16 C 1.53000 * 109.47209 * 179.97438 * 15 12 11 17 17 C 1.52997 * 109.46961 * 300.00108 * 16 15 12 18 18 C 1.53000 * 109.47016 * 59.99785 * 16 15 12 19 19 C 1.50700 * 109.47103 * 179.97438 * 16 15 12 20 20 H 1.08000 * 119.99997 * 0.02562 * 19 16 15 21 21 C 1.37874 * 119.99782 * 179.97438 * 19 16 15 22 22 N 1.31517 * 120.00157 * 0.02562 * 21 19 16 23 23 Si 1.86805 * 119.99872 * 180.02562 * 21 19 16 24 24 H 1.48497 * 109.47095 * 60.00116 * 23 21 19 25 25 H 1.48502 * 109.47098 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46658 * 300.00036 * 23 21 19 27 27 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 30 30 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.00533 * 180.02562 * 4 3 2 32 32 H 1.08001 * 119.99773 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.00080 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47106 * 299.99743 * 10 8 7 35 35 H 1.09003 * 109.46741 * 60.00291 * 10 8 7 36 36 H 1.08999 * 109.46802 * 179.97438 * 10 8 7 37 37 H 0.97002 * 119.99746 * 325.00388 * 11 8 7 38 38 H 1.08994 * 109.47043 * 299.99788 * 15 12 11 39 39 H 1.09002 * 109.46942 * 59.99545 * 15 12 11 40 40 H 1.08998 * 109.47307 * 59.99997 * 17 16 15 41 41 H 1.09005 * 109.47041 * 180.02562 * 17 16 15 42 42 H 1.09004 * 109.47331 * 299.99427 * 17 16 15 43 43 H 1.09007 * 109.46879 * 60.00073 * 18 16 15 44 44 H 1.09002 * 109.47222 * 179.97438 * 18 16 15 45 45 H 1.08998 * 109.47344 * 300.00059 * 18 16 15 46 46 H 0.97001 * 119.99912 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1969 0.0016 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 1 0.5337 -2.3930 0.6002 10 6 1.0812 -2.8875 -1.4238 11 7 2.2843 -3.5482 0.6005 12 16 1.5965 -4.7446 1.5158 13 8 2.6956 -5.5443 1.9302 14 8 0.7997 -4.0468 2.4631 15 6 0.5475 -5.6585 0.3517 16 6 -0.1507 -6.8048 1.0862 17 6 0.9001 -7.7483 1.6748 18 6 -1.0149 -6.2367 2.2137 19 6 -1.0226 -7.5637 0.1192 20 1 -1.0734 -7.2591 -0.9157 21 6 -1.7548 -8.6474 0.5556 22 7 -1.6926 -9.0186 1.8158 23 14 -2.8351 -9.5885 -0.6431 24 1 -1.9964 -10.1395 -1.7377 25 1 -3.5128 -10.7010 0.0698 26 1 -3.8552 -8.6727 -1.2140 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1326 0.0010 32 1 5.3517 0.0001 0.0024 33 1 4.1206 -2.1322 0.0029 34 1 0.4564 -2.1092 -1.8619 35 1 1.9921 -2.9965 -2.0124 36 1 0.5365 -3.8316 -1.4195 37 1 3.2432 -3.5399 0.4543 38 1 -0.2007 -4.9862 -0.0679 39 1 1.1633 -6.0635 -0.4513 40 1 1.5304 -7.1992 2.3743 41 1 0.4026 -8.5653 2.1977 42 1 1.5157 -8.1531 0.8715 43 1 -1.7635 -5.5645 1.7943 44 1 -1.5127 -7.0533 2.7367 45 1 -0.3845 -5.6876 2.9132 46 1 -2.2080 -9.7808 2.1229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295158897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:34 Heat of formation + Delta-G solvation = -74.971803 kcal Electronic energy + Delta-G solvation = -26682.079260 eV Core-core repulsion = 23083.749286 eV Total energy + Delta-G solvation = -3598.329974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75046 -38.15615 -38.12928 -37.13313 -36.88416 -33.83389 -33.62562 -31.70963 -30.10547 -28.35681 -27.72391 -27.68457 -27.23013 -24.72343 -22.75126 -21.58682 -21.32485 -20.22880 -18.98550 -18.01177 -17.76298 -16.95129 -16.85559 -16.60708 -16.39417 -15.91124 -15.34142 -15.13048 -14.98164 -14.74223 -14.43540 -14.34916 -14.21334 -13.95030 -13.83393 -13.47601 -13.12499 -13.07838 -13.02554 -12.87113 -12.84925 -12.77699 -12.71005 -12.50789 -12.47079 -12.17442 -12.14905 -11.95764 -11.83635 -11.56637 -11.53087 -11.36320 -10.75246 -10.43461 -10.39681 -9.68884 -9.46337 -8.01532 -6.20214 -0.63055 0.44265 0.50008 1.46841 1.47184 1.54266 1.86457 2.45495 2.83800 2.85767 3.20697 3.30205 3.58191 3.92285 3.98483 4.04462 4.10659 4.15271 4.27140 4.27584 4.38386 4.49744 4.59587 4.66544 4.78556 4.83700 4.87299 4.88312 4.89847 4.98044 5.02805 5.07181 5.10532 5.13927 5.30151 5.37917 5.41124 5.51471 5.61314 5.63634 5.66015 5.74545 5.98030 6.07173 6.12570 6.14603 6.35087 6.84610 7.48180 8.98225 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.003433 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.737191 B = 8155.170465 C = 8670.734630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.090 4.090 3 C -0.125 4.125 4 C -0.123 4.123 5 C -0.131 4.131 6 C -0.125 4.125 7 C -0.099 4.099 8 C 0.177 3.823 9 H 0.096 0.904 10 C -0.175 4.175 11 N -1.110 6.110 12 S 2.609 3.391 13 O -0.993 6.993 14 O -0.991 6.991 15 C -0.583 4.583 16 C 0.071 3.929 17 C -0.161 4.161 18 C -0.160 4.160 19 C -0.516 4.516 20 H 0.066 0.934 21 C 0.018 3.982 22 N -0.909 5.909 23 Si 0.954 3.046 24 H -0.272 1.272 25 H -0.290 1.290 26 H -0.270 1.270 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.420 0.580 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.030 0.970 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.031 0.969 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.885 19.657 -7.888 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.144 4.144 7 C -0.100 4.100 8 C 0.071 3.929 9 H 0.113 0.887 10 C -0.233 4.233 11 N -0.871 5.871 12 S 2.707 3.293 13 O -0.984 6.984 14 O -0.981 6.981 15 C -0.716 4.716 16 C 0.069 3.931 17 C -0.219 4.219 18 C -0.218 4.218 19 C -0.556 4.556 20 H 0.084 0.916 21 C -0.182 4.182 22 N -0.548 5.548 23 Si 0.780 3.220 24 H -0.197 1.197 25 H -0.215 1.215 26 H -0.196 1.196 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.258 0.742 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.795 19.401 -6.780 21.980 hybrid contribution -0.350 -1.035 -0.850 1.385 sum 7.445 18.365 -7.630 21.235 Atomic orbital electron populations 1.21009 0.90243 1.03532 1.03580 1.19978 0.97053 0.92483 0.99502 1.21316 0.94720 0.97761 1.00458 1.21479 0.94471 0.98858 0.99319 1.21398 1.00981 0.92221 1.00334 1.21116 0.93581 0.99133 1.00546 1.19794 0.94344 0.93772 1.02106 1.19909 0.92759 0.84414 0.95833 0.88655 1.22464 1.03357 1.03176 0.94344 1.55616 1.18705 1.41195 1.71607 1.04836 0.74729 0.73727 0.75977 1.93505 1.52995 1.70350 1.81514 1.93502 1.72199 1.72662 1.59728 1.30552 1.14189 1.11426 1.15442 1.17912 0.92530 0.89720 0.92986 1.22222 0.97480 1.02345 0.99855 1.22207 1.00457 1.00301 0.98794 1.21271 1.25837 1.12904 0.95547 0.91596 1.25679 0.97913 0.97988 0.96604 1.69944 1.41880 1.27147 1.15781 0.85675 0.79075 0.78144 0.79087 1.19731 1.21536 1.19553 0.89291 0.90138 0.91846 0.83943 0.83787 0.84183 0.85496 0.89402 0.90711 0.91227 0.74225 0.84128 0.84185 0.95124 0.91036 0.94071 0.93905 0.91112 0.95064 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.39 71.24 0.67 -1.42 16 2 C -0.09 -1.76 5.88 -19.87 -0.12 -1.87 16 3 C -0.12 -2.07 9.70 22.27 0.22 -1.85 16 4 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16 5 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 6 C -0.13 -2.55 9.29 22.27 0.21 -2.34 16 7 C -0.10 -2.17 5.06 -19.87 -0.10 -2.27 16 8 C 0.18 4.17 2.52 44.24 0.11 4.28 16 9 H 0.10 2.42 5.50 -2.39 -0.01 2.40 16 10 C -0.17 -3.35 9.46 71.98 0.68 -2.67 16 11 N -1.11 -29.57 5.23 -172.52 -0.90 -30.47 16 12 S 2.61 95.17 4.47 -56.49 -0.25 94.92 16 13 O -0.99 -41.68 15.70 -127.65 -2.00 -43.69 16 14 O -0.99 -41.64 15.01 -127.65 -1.92 -43.56 16 15 C -0.58 -21.51 4.16 71.98 0.30 -21.21 16 16 C 0.07 3.36 0.52 -52.93 -0.03 3.34 16 17 C -0.16 -8.02 7.78 71.98 0.56 -7.46 16 18 C -0.16 -7.88 7.77 71.98 0.56 -7.32 16 19 C -0.52 -26.41 8.01 25.60 0.21 -26.20 16 20 H 0.07 3.19 7.74 -2.91 -0.02 3.17 16 21 C 0.02 0.92 5.15 84.65 0.44 1.36 16 22 N -0.91 -50.17 9.35 21.45 0.20 -49.97 16 23 Si 0.95 41.64 29.54 68.60 2.03 43.67 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 29 H 0.06 1.19 6.02 -2.38 -0.01 1.18 16 30 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 31 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.13 2.29 6.08 -2.91 -0.02 2.27 16 34 H 0.09 1.38 7.92 -2.39 -0.02 1.36 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.39 5.78 -2.39 -0.01 1.37 16 37 H 0.42 9.51 6.53 -96.75 -0.63 8.88 16 38 H 0.14 4.51 6.77 -2.39 -0.02 4.50 16 39 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 40 H 0.03 1.46 5.46 -2.39 -0.01 1.45 16 41 H 0.07 3.89 6.07 -2.38 -0.01 3.87 16 42 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 45 H 0.03 1.48 5.47 -2.39 -0.01 1.46 16 46 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -68.10 362.09 1.66 -66.44 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.36 Total: 32.03 kcal Atomic # 6 Polarization: -73.53 SS G_CDS: 4.15 Total: -69.38 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -0.70 Total: -80.44 kcal Atomic # 8 Polarization: -83.32 SS G_CDS: -3.92 Total: -87.24 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 95.17 SS G_CDS: -0.25 Total: 94.92 kcal Total: -68.10 1.66 -66.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295158897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.529 kcal (2) G-P(sol) polarization free energy of solvation -68.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds