Wall clock time and date at job start Tue Mar 31 2020 14:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38232 * 120.00098 * 2 1 4 4 C 1.38233 * 120.00422 * 179.97438 * 3 2 1 5 5 C 1.38237 * 119.99656 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00312 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.46665 * 340.00062 * 6 5 4 8 8 C 1.53006 * 109.47184 * 99.99673 * 6 5 4 9 9 N 1.46492 * 109.47354 * 220.00148 * 6 5 4 10 10 S 1.65601 * 120.00062 * 144.99818 * 9 6 5 11 11 O 1.42105 * 104.27675 * 181.06938 * 10 9 6 12 12 O 1.42099 * 104.27743 * 308.92922 * 10 9 6 13 13 C 1.81402 * 104.45028 * 65.00048 * 10 9 6 14 14 C 1.52992 * 109.47524 * 180.02562 * 13 10 9 15 15 C 1.53006 * 109.46945 * 300.00149 * 14 13 10 16 16 C 1.52997 * 109.47062 * 59.99400 * 14 13 10 17 17 C 1.50695 * 109.47416 * 180.02562 * 14 13 10 18 18 H 1.07999 * 119.99920 * 359.97438 * 17 14 13 19 19 C 1.37883 * 119.99949 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00085 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99925 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.47082 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46809 * 120.00278 * 21 19 17 24 24 H 1.48494 * 109.47271 * 240.00235 * 21 19 17 25 25 C 1.38242 * 119.99800 * 0.27553 * 5 4 3 26 26 C 1.38232 * 120.00009 * 359.51827 * 25 5 4 27 27 H 1.08998 * 109.46803 * 89.99785 * 1 2 3 28 28 H 1.09000 * 109.47443 * 209.99957 * 1 2 3 29 29 H 1.09002 * 109.47166 * 330.00560 * 1 2 3 30 30 H 1.08001 * 120.00121 * 359.97438 * 3 2 1 31 31 H 1.07992 * 120.00535 * 180.02562 * 4 3 2 32 32 H 1.09001 * 109.46998 * 60.00038 * 8 6 5 33 33 H 1.09000 * 109.47050 * 180.02562 * 8 6 5 34 34 H 1.09001 * 109.46801 * 300.00442 * 8 6 5 35 35 H 0.97003 * 120.00229 * 324.99767 * 9 6 5 36 36 H 1.09000 * 109.46799 * 300.00078 * 13 10 9 37 37 H 1.09004 * 109.46934 * 59.99887 * 13 10 9 38 38 H 1.08993 * 109.47617 * 59.99482 * 15 14 13 39 39 H 1.08997 * 109.47010 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.46988 * 299.99917 * 15 14 13 41 41 H 1.08999 * 109.47178 * 60.01002 * 16 14 13 42 42 H 1.09007 * 109.47134 * 180.02562 * 16 14 13 43 43 H 1.08997 * 109.47782 * 300.00108 * 16 14 13 44 44 H 0.97003 * 120.00161 * 179.97438 * 20 19 17 45 45 H 1.07998 * 119.99533 * 179.72614 * 25 5 4 46 46 H 1.08002 * 119.99840 * 180.27336 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 -0.0001 0.0028 7 1 6.1423 0.9655 -0.3489 8 6 6.2876 -0.2499 1.4239 9 7 6.2677 -1.0585 -0.8842 10 16 7.6520 -0.8281 -1.7634 11 8 7.7972 -2.0289 -2.5093 12 8 7.4503 0.4188 -2.4143 13 6 8.9625 -0.6908 -0.5167 14 6 10.3075 -0.4726 -1.2124 15 6 10.6029 -1.6573 -2.1346 16 6 10.2518 0.8145 -2.0378 17 6 11.3963 -0.3591 -0.1768 18 1 11.1532 -0.4347 0.8728 19 6 12.7029 -0.1589 -0.5692 20 7 12.9989 -0.0673 -1.8472 21 14 14.0524 -0.0175 0.7147 22 1 13.4621 -0.1544 2.0704 23 1 15.0539 -1.0929 0.5004 24 1 14.7140 1.3063 0.5937 25 6 3.5805 -1.1972 -0.0036 26 6 2.1982 -1.1971 0.0002 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6583 2.1325 -0.0004 31 1 4.1205 2.1324 0.0010 32 1 5.9240 -1.2154 1.7756 33 1 7.3776 -0.2495 1.4248 34 1 5.9237 0.5377 2.0838 35 1 5.7807 -1.8942 -0.9565 36 1 8.7523 0.1534 0.1399 37 1 9.0019 -1.6077 0.0715 38 1 9.8155 -1.7399 -2.8837 39 1 11.5609 -1.5016 -2.6306 40 1 10.6425 -2.5743 -1.5466 41 1 10.0415 1.6585 -1.3810 42 1 11.2100 0.9698 -2.5339 43 1 9.4644 0.7320 -2.7870 44 1 13.9181 0.0739 -2.1233 45 1 4.1205 -2.1324 -0.0072 46 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296710298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:40 Heat of formation + Delta-G solvation = -61.546848 kcal Electronic energy + Delta-G solvation = -26244.131955 eV Core-core repulsion = 22646.384131 eV Total energy + Delta-G solvation = -3597.747824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.82348 -36.71678 -36.28739 -36.27041 -35.28476 -32.46154 -31.68931 -31.10067 -29.66780 -27.13491 -26.43791 -25.71519 -25.23035 -23.19650 -22.70846 -20.66629 -19.61771 -18.78467 -17.65080 -16.79555 -15.97622 -15.58668 -15.41950 -15.33368 -14.99484 -14.73632 -14.43290 -14.08792 -13.70385 -13.56434 -13.44463 -13.17434 -12.98170 -12.58462 -12.48793 -12.41059 -12.06961 -11.97654 -11.75594 -11.67445 -11.42575 -11.19494 -11.08560 -11.05923 -10.95999 -10.83423 -10.69838 -10.35943 -10.27787 -10.09692 -9.71015 -9.65271 -9.29470 -9.07201 -8.69398 -8.64486 -8.41002 -6.04014 -4.15936 0.84159 1.17064 1.25501 3.19453 3.24369 3.32959 3.35289 3.59688 4.29371 4.37678 4.44269 4.62236 4.71886 4.79815 4.85556 4.99146 5.12360 5.20878 5.21907 5.26747 5.32286 5.36837 5.50701 5.54610 5.59928 5.72005 5.76093 5.85733 5.90488 6.04457 6.09824 6.26194 6.40333 6.41388 6.51133 6.70264 6.79674 6.84101 6.90992 7.02268 7.13152 7.31554 7.50320 7.67535 7.97949 8.09424 8.32536 8.82850 9.49564 10.97335 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.003022 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.748126 B = 9263.130708 C = 9656.725870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.106 4.106 5 C -0.084 4.084 6 C 0.185 3.815 7 H 0.101 0.899 8 C -0.176 4.176 9 N -1.124 6.124 10 S 2.592 3.408 11 O -0.965 6.965 12 O -0.963 6.963 13 C -0.583 4.583 14 C 0.082 3.918 15 C -0.164 4.164 16 C -0.164 4.164 17 C -0.501 4.501 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.883 5.883 21 Si 0.895 3.105 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.107 4.107 26 C -0.119 4.119 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.410 0.590 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.027 0.973 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.262 0.738 45 H 0.122 0.878 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.746 -0.044 6.081 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.124 4.124 5 C -0.085 4.085 6 C 0.078 3.922 7 H 0.119 0.881 8 C -0.234 4.234 9 N -0.880 5.880 10 S 2.690 3.310 11 O -0.955 6.955 12 O -0.953 6.953 13 C -0.716 4.716 14 C 0.080 3.920 15 C -0.222 4.222 16 C -0.222 4.222 17 C -0.540 4.540 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.521 5.521 21 Si 0.723 3.277 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.125 4.125 26 C -0.137 4.137 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.244 0.756 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.140 0.860 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.479 0.196 5.003 21.082 hybrid contribution 0.762 -0.329 1.381 1.611 sum -19.717 -0.133 6.384 20.725 Atomic orbital electron populations 1.20784 0.91318 1.02632 1.02288 1.19932 0.96024 0.93297 0.99978 1.21003 0.94033 0.97539 1.01073 1.21061 0.94225 0.97643 0.99517 1.19915 0.94792 0.93630 1.00202 1.19673 0.90440 0.91577 0.90544 0.88096 1.22478 1.02602 1.02931 0.95429 1.56021 1.44450 1.25380 1.62191 1.05669 0.74556 0.74400 0.76395 1.93553 1.85594 1.47575 1.68806 1.93541 1.84372 1.45107 1.72312 1.30631 1.15278 1.09844 1.15871 1.17927 0.87228 0.93229 0.93609 1.22280 1.03715 0.97433 0.98774 1.22279 1.03158 0.97715 0.99039 1.20975 0.90974 1.49911 0.92138 0.92243 1.24944 0.98569 0.94897 0.95379 1.69811 1.18997 1.49212 1.14125 0.86486 0.81865 0.77691 0.81632 1.19845 1.20980 1.20964 1.20921 0.94090 0.97686 0.99799 1.20994 0.94021 0.97545 1.01176 0.91230 0.91646 0.91623 0.86003 0.85543 0.91658 0.90814 0.91138 0.75613 0.86289 0.86164 0.95405 0.88637 0.94459 0.94465 0.88668 0.95315 0.92801 0.85983 0.86088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.09 -0.85 5.88 -104.62 -0.62 -1.47 16 3 C -0.12 -1.13 9.70 -39.59 -0.38 -1.51 16 4 C -0.11 -1.13 9.67 -39.58 -0.38 -1.51 16 5 C -0.08 -0.96 4.96 -104.62 -0.52 -1.48 16 6 C 0.19 2.27 3.01 -69.08 -0.21 2.06 16 7 H 0.10 1.29 7.34 -51.93 -0.38 0.90 16 8 C -0.18 -1.85 9.46 37.16 0.35 -1.50 16 9 N -1.12 -15.51 5.31 -5.88 -0.03 -15.54 16 10 S 2.59 47.96 4.47 -107.50 -0.48 47.48 16 11 O -0.96 -20.39 15.70 -57.54 -0.90 -21.29 16 12 O -0.96 -20.29 15.01 -57.54 -0.86 -21.16 16 13 C -0.58 -11.10 4.16 37.15 0.15 -10.95 16 14 C 0.08 1.97 0.52 -155.67 -0.08 1.89 16 15 C -0.16 -4.05 7.77 37.16 0.29 -3.76 16 16 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 17 C -0.50 -12.98 8.01 -34.44 -0.28 -13.25 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 20 N -0.88 -24.03 9.35 55.43 0.52 -23.52 16 21 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.11 -1.12 9.16 -39.58 -0.36 -1.48 16 26 C -0.12 -1.14 9.70 -39.59 -0.38 -1.52 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.13 1.17 8.04 -52.49 -0.42 0.75 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.82 5.78 -51.93 -0.30 0.52 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.41 4.87 7.03 -34.47 -0.24 4.63 16 36 H 0.12 2.02 6.77 -51.92 -0.35 1.67 16 37 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 38 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 39 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 43 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 44 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.12 1.11 6.80 -52.49 -0.36 0.75 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -32.08 367.68 -10.12 -42.20 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.02 Total: 7.80 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: -1.86 Total: -37.00 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.49 Total: -39.06 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.77 Total: -42.45 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 47.96 SS G_CDS: -0.48 Total: 47.48 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.08 -10.12 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296710298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.350 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds