Wall clock time and date at job start Tue Mar 31 2020 14:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38232 * 120.00098 * 2 1 4 4 C 1.38233 * 120.00422 * 179.97438 * 3 2 1 5 5 C 1.38237 * 119.99656 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00312 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.46665 * 340.00062 * 6 5 4 8 8 C 1.53006 * 109.47184 * 99.99673 * 6 5 4 9 9 N 1.46492 * 109.47354 * 220.00148 * 6 5 4 10 10 S 1.65601 * 120.00062 * 144.99818 * 9 6 5 11 11 O 1.42105 * 104.27675 * 181.06938 * 10 9 6 12 12 O 1.42099 * 104.27743 * 308.92922 * 10 9 6 13 13 C 1.81402 * 104.45028 * 65.00048 * 10 9 6 14 14 C 1.52992 * 109.47524 * 180.02562 * 13 10 9 15 15 C 1.53006 * 109.46945 * 300.00149 * 14 13 10 16 16 C 1.52997 * 109.47062 * 59.99400 * 14 13 10 17 17 C 1.50695 * 109.47416 * 180.02562 * 14 13 10 18 18 H 1.07999 * 119.99920 * 359.97438 * 17 14 13 19 19 C 1.37883 * 119.99949 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00085 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99925 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.47082 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46809 * 120.00278 * 21 19 17 24 24 H 1.48494 * 109.47271 * 240.00235 * 21 19 17 25 25 C 1.38242 * 119.99800 * 0.27553 * 5 4 3 26 26 C 1.38232 * 120.00009 * 359.51827 * 25 5 4 27 27 H 1.08998 * 109.46803 * 89.99785 * 1 2 3 28 28 H 1.09000 * 109.47443 * 209.99957 * 1 2 3 29 29 H 1.09002 * 109.47166 * 330.00560 * 1 2 3 30 30 H 1.08001 * 120.00121 * 359.97438 * 3 2 1 31 31 H 1.07992 * 120.00535 * 180.02562 * 4 3 2 32 32 H 1.09001 * 109.46998 * 60.00038 * 8 6 5 33 33 H 1.09000 * 109.47050 * 180.02562 * 8 6 5 34 34 H 1.09001 * 109.46801 * 300.00442 * 8 6 5 35 35 H 0.97003 * 120.00229 * 324.99767 * 9 6 5 36 36 H 1.09000 * 109.46799 * 300.00078 * 13 10 9 37 37 H 1.09004 * 109.46934 * 59.99887 * 13 10 9 38 38 H 1.08993 * 109.47617 * 59.99482 * 15 14 13 39 39 H 1.08997 * 109.47010 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.46988 * 299.99917 * 15 14 13 41 41 H 1.08999 * 109.47178 * 60.01002 * 16 14 13 42 42 H 1.09007 * 109.47134 * 180.02562 * 16 14 13 43 43 H 1.08997 * 109.47782 * 300.00108 * 16 14 13 44 44 H 0.97003 * 120.00161 * 179.97438 * 20 19 17 45 45 H 1.07998 * 119.99533 * 179.72614 * 25 5 4 46 46 H 1.08002 * 119.99840 * 180.27336 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 -0.0001 0.0028 7 1 6.1423 0.9655 -0.3489 8 6 6.2876 -0.2499 1.4239 9 7 6.2677 -1.0585 -0.8842 10 16 7.6520 -0.8281 -1.7634 11 8 7.7972 -2.0289 -2.5093 12 8 7.4503 0.4188 -2.4143 13 6 8.9625 -0.6908 -0.5167 14 6 10.3075 -0.4726 -1.2124 15 6 10.6029 -1.6573 -2.1346 16 6 10.2518 0.8145 -2.0378 17 6 11.3963 -0.3591 -0.1768 18 1 11.1532 -0.4347 0.8728 19 6 12.7029 -0.1589 -0.5692 20 7 12.9989 -0.0673 -1.8472 21 14 14.0524 -0.0175 0.7147 22 1 13.4621 -0.1544 2.0704 23 1 15.0539 -1.0929 0.5004 24 1 14.7140 1.3063 0.5937 25 6 3.5805 -1.1972 -0.0036 26 6 2.1982 -1.1971 0.0002 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6583 2.1325 -0.0004 31 1 4.1205 2.1324 0.0010 32 1 5.9240 -1.2154 1.7756 33 1 7.3776 -0.2495 1.4248 34 1 5.9237 0.5377 2.0838 35 1 5.7807 -1.8942 -0.9565 36 1 8.7523 0.1534 0.1399 37 1 9.0019 -1.6077 0.0715 38 1 9.8155 -1.7399 -2.8837 39 1 11.5609 -1.5016 -2.6306 40 1 10.6425 -2.5743 -1.5466 41 1 10.0415 1.6585 -1.3810 42 1 11.2100 0.9698 -2.5339 43 1 9.4644 0.7320 -2.7870 44 1 13.9181 0.0739 -2.1233 45 1 4.1205 -2.1324 -0.0072 46 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296710298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:39 Heat of formation + Delta-G solvation = -80.715650 kcal Electronic energy + Delta-G solvation = -26244.963177 eV Core-core repulsion = 22646.384131 eV Total energy + Delta-G solvation = -3598.579045 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.58265 -38.16118 -38.12766 -37.34683 -36.88672 -33.63638 -33.24968 -31.82093 -30.60263 -28.46121 -27.68472 -27.44714 -27.23197 -23.97714 -23.50802 -21.47287 -21.37566 -20.24088 -18.99491 -18.01726 -17.74873 -16.93557 -16.71305 -16.52124 -16.26402 -15.96374 -15.41487 -15.03533 -14.83086 -14.71272 -14.45872 -14.39570 -14.24638 -14.16691 -13.84669 -13.61772 -13.11782 -13.05695 -13.00596 -12.90640 -12.82806 -12.68236 -12.63157 -12.46442 -12.45902 -12.18618 -12.11165 -11.98365 -11.79709 -11.70287 -11.55217 -11.37423 -10.71520 -10.41636 -10.40034 -9.80841 -9.40267 -8.02085 -6.20396 -0.62379 0.40186 0.51838 1.43654 1.46915 1.56230 1.89022 2.44970 2.84007 2.85210 3.20416 3.31748 3.61133 3.90632 3.99511 4.09867 4.11857 4.17889 4.23079 4.27033 4.41823 4.57605 4.59309 4.61632 4.80377 4.86110 4.86805 4.87752 4.90327 4.97923 5.01825 5.07458 5.10084 5.22956 5.29054 5.33978 5.41003 5.51384 5.52777 5.66244 5.70630 5.72871 5.98038 6.08144 6.12645 6.13910 6.35056 6.84925 7.47955 8.98062 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.003022 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.748126 B = 9263.130708 C = 9656.725870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.126 4.126 4 C -0.120 4.120 5 C -0.101 4.101 6 C 0.180 3.820 7 H 0.093 0.907 8 C -0.175 4.175 9 N -1.108 6.108 10 S 2.610 3.390 11 O -0.994 6.994 12 O -0.992 6.992 13 C -0.583 4.583 14 C 0.070 3.930 15 C -0.162 4.162 16 C -0.161 4.161 17 C -0.513 4.513 18 H 0.065 0.935 19 C 0.016 3.984 20 N -0.909 5.909 21 Si 0.954 3.046 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.118 4.118 26 C -0.127 4.127 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.421 0.579 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.030 0.970 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.031 0.969 44 H 0.260 0.740 45 H 0.132 0.868 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.591 -0.231 7.928 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.102 4.102 6 C 0.073 3.927 7 H 0.111 0.889 8 C -0.233 4.233 9 N -0.869 5.869 10 S 2.708 3.292 11 O -0.984 6.984 12 O -0.982 6.982 13 C -0.716 4.716 14 C 0.068 3.932 15 C -0.219 4.219 16 C -0.219 4.219 17 C -0.552 4.552 18 H 0.084 0.916 19 C -0.183 4.183 20 N -0.548 5.548 21 Si 0.781 3.219 22 H -0.188 1.188 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.136 4.136 26 C -0.145 4.145 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.257 0.743 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.150 0.850 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.330 0.003 6.856 23.358 hybrid contribution 1.220 -0.260 0.803 1.483 sum -21.110 -0.257 7.659 22.458 Atomic orbital electron populations 1.20831 0.89429 1.03706 1.02931 1.20315 0.97545 0.93075 0.98813 1.21287 0.93786 0.98666 1.00674 1.21273 0.95002 0.97795 0.99833 1.19900 0.94112 0.94414 1.01810 1.19849 0.91368 0.90489 0.90958 0.88940 1.22479 1.02181 1.04184 0.94482 1.55569 1.42778 1.26457 1.62056 1.04820 0.75052 0.73182 0.76161 1.93505 1.86352 1.48483 1.70070 1.93502 1.84954 1.46350 1.73349 1.30552 1.12955 1.11901 1.16212 1.17912 0.89542 0.92312 0.93393 1.22226 1.02504 0.98160 0.99058 1.22216 1.01833 0.98567 0.99257 1.21322 0.91677 1.49392 0.92815 0.91631 1.25686 1.00758 0.94900 0.96959 1.69955 1.19211 1.49958 1.15668 0.85562 0.79245 0.77270 0.79872 1.18800 1.21148 1.21059 1.21127 0.94794 0.97793 0.99929 1.21292 0.93858 0.98634 1.00736 0.90679 0.90606 0.90606 0.84198 0.84908 0.90559 0.91350 0.89652 0.74269 0.84155 0.84150 0.95097 0.91069 0.94012 0.93901 0.91133 0.95009 0.92994 0.85019 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.24 0.71 -0.47 16 2 C -0.10 -1.58 5.88 -19.87 -0.12 -1.70 16 3 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 4 C -0.12 -2.41 9.67 22.27 0.22 -2.19 16 5 C -0.10 -2.16 4.96 -19.86 -0.10 -2.26 16 6 C 0.18 4.15 3.01 44.25 0.13 4.28 16 7 H 0.09 2.28 7.34 -2.39 -0.02 2.26 16 8 C -0.17 -3.30 9.46 71.98 0.68 -2.62 16 9 N -1.11 -29.08 5.31 -172.53 -0.92 -29.99 16 10 S 2.61 94.77 4.47 -56.49 -0.25 94.52 16 11 O -0.99 -41.61 15.70 -127.65 -2.00 -43.61 16 12 O -0.99 -41.60 15.01 -127.65 -1.92 -43.52 16 13 C -0.58 -21.48 4.16 71.98 0.30 -21.18 16 14 C 0.07 3.36 0.52 -52.93 -0.03 3.33 16 15 C -0.16 -8.04 7.77 71.98 0.56 -7.48 16 16 C -0.16 -7.96 7.78 71.98 0.56 -7.40 16 17 C -0.51 -26.26 8.01 25.60 0.21 -26.05 16 18 H 0.07 3.20 7.74 -2.91 -0.02 3.18 16 19 C 0.02 0.85 5.15 84.66 0.44 1.29 16 20 N -0.91 -50.27 9.35 21.45 0.20 -50.07 16 21 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 C -0.12 -2.27 9.16 22.27 0.20 -2.07 16 26 C -0.13 -2.16 9.70 22.27 0.22 -1.94 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 29 H 0.08 0.64 8.09 -2.39 -0.02 0.63 16 30 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.13 2.34 8.04 -2.91 -0.02 2.31 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.36 5.78 -2.39 -0.01 1.35 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.42 9.35 7.03 -96.74 -0.68 8.67 16 36 H 0.14 4.51 6.77 -2.39 -0.02 4.49 16 37 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 38 H 0.03 1.47 5.46 -2.39 -0.01 1.46 16 39 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 40 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 3.82 6.07 -2.38 -0.01 3.81 16 43 H 0.03 1.51 5.46 -2.39 -0.01 1.49 16 44 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 45 H 0.13 2.14 6.80 -2.91 -0.02 2.12 16 46 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -68.20 367.68 1.63 -66.57 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.30 Total: 30.68 kcal Atomic # 6 Polarization: -72.62 SS G_CDS: 4.20 Total: -68.43 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -0.72 Total: -80.06 kcal Atomic # 8 Polarization: -83.21 SS G_CDS: -3.92 Total: -87.13 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 94.77 SS G_CDS: -0.25 Total: 94.52 kcal Total: -68.20 1.63 -66.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296710298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.149 kcal (2) G-P(sol) polarization free energy of solvation -68.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds