Wall clock time and date at job start Tue Mar 31 2020 14:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38314 * 119.96105 * 2 1 4 4 C 1.38267 * 120.14560 * 180.02562 * 3 2 1 5 5 C 1.38128 * 120.07750 * 359.74215 * 4 3 2 6 6 C 1.50695 * 120.03710 * 180.27542 * 5 4 3 7 7 C 1.38889 * 119.92129 * 0.53404 * 5 4 3 8 8 N 1.39676 * 120.07313 * 179.74462 * 7 5 4 9 9 C 1.46498 * 119.99736 * 94.25465 * 8 7 5 10 10 S 1.65595 * 120.00185 * 274.25758 * 8 7 5 11 11 O 1.42103 * 104.27777 * 20.49655 * 10 8 7 12 12 O 1.42096 * 104.27785 * 148.35686 * 10 8 7 13 13 C 1.81402 * 104.44975 * 264.42882 * 10 8 7 14 14 C 1.52995 * 109.47343 * 180.02562 * 13 10 8 15 15 C 1.52996 * 109.47356 * 300.00308 * 14 13 10 16 16 C 1.53008 * 109.46939 * 60.00051 * 14 13 10 17 17 C 1.50700 * 109.47277 * 180.02562 * 14 13 10 18 18 H 1.08001 * 119.99700 * 359.97438 * 17 14 13 19 19 C 1.37871 * 120.00046 * 180.02562 * 17 14 13 20 20 N 1.31519 * 120.00242 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 120.00148 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47033 * 59.99846 * 21 19 17 23 23 H 1.48501 * 109.47285 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46994 * 299.99826 * 21 19 17 25 25 C 1.38081 * 119.96526 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46658 * 269.97761 * 1 2 3 27 27 H 1.08998 * 109.47006 * 29.97972 * 1 2 3 28 28 H 1.08998 * 109.47143 * 149.97841 * 1 2 3 29 29 H 1.07994 * 119.92451 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.95323 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47384 * 265.11501 * 6 5 4 32 32 H 1.09000 * 109.47415 * 25.11464 * 6 5 4 33 33 H 1.08998 * 109.47097 * 145.11574 * 6 5 4 34 34 H 1.08998 * 109.47284 * 270.00139 * 9 8 7 35 35 H 1.09005 * 109.47413 * 30.00227 * 9 8 7 36 36 H 1.08997 * 109.47040 * 150.00190 * 9 8 7 37 37 H 1.09001 * 109.46712 * 300.03221 * 13 10 8 38 38 H 1.09004 * 109.46876 * 60.03060 * 13 10 8 39 39 H 1.09003 * 109.47332 * 59.99815 * 15 14 13 40 40 H 1.08997 * 109.47274 * 179.97438 * 15 14 13 41 41 H 1.09004 * 109.47186 * 299.99819 * 15 14 13 42 42 H 1.09001 * 109.47019 * 59.99520 * 16 14 13 43 43 H 1.08997 * 109.47062 * 179.97438 * 16 14 13 44 44 H 1.08996 * 109.46794 * 299.99992 * 16 14 13 45 45 H 0.96997 * 120.00016 * 180.02562 * 20 19 17 46 46 H 1.08001 * 120.03545 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5804 1.2028 -0.0005 5 6 4.2766 0.0097 0.0043 6 6 5.7835 0.0157 0.0100 7 6 3.5860 -1.1953 -0.0015 8 7 4.2867 -2.4036 -0.0020 9 6 4.5679 -3.0877 1.2625 10 16 4.7997 -3.0627 -1.4319 11 8 4.8075 -1.9689 -2.3391 12 8 6.0007 -3.7425 -1.0936 13 6 3.5005 -4.2484 -1.8757 14 6 3.8631 -4.9321 -3.1954 15 6 3.9902 -3.8786 -4.2976 16 6 5.1946 -5.6695 -3.0388 17 6 2.7835 -5.9167 -3.5644 18 1 1.9248 -6.0424 -2.9216 19 6 2.8925 -6.6576 -4.7220 20 7 3.9385 -6.5048 -5.5045 21 14 1.5546 -7.8785 -5.1790 22 1 0.2624 -7.1628 -5.3315 23 1 1.9065 -8.5421 -6.4600 24 1 1.4310 -8.9008 -4.1090 25 6 2.1967 -1.1962 -0.0005 26 1 -0.3632 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6560 2.1325 0.0004 30 1 4.1167 2.1403 -0.0001 31 1 6.1511 -0.0723 -1.0124 32 1 6.1416 0.9484 0.4458 33 1 6.1479 -0.8248 0.6007 34 1 5.5239 -2.7435 1.6571 35 1 3.7776 -2.8654 1.9796 36 1 4.6115 -4.1634 1.0918 37 1 3.4100 -4.9988 -1.0904 38 1 2.5519 -3.7230 -1.9874 39 1 4.7709 -3.1662 -4.0310 40 1 4.2490 -4.3657 -5.2377 41 1 3.0417 -3.3533 -4.4093 42 1 5.1041 -6.4200 -2.2535 43 1 5.4528 -6.1570 -3.9788 44 1 5.9752 -4.9570 -2.7721 45 1 4.0149 -7.0258 -6.3191 46 1 1.6567 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296842607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:57 Heat of formation + Delta-G solvation = -50.145278 kcal Electronic energy + Delta-G solvation = -27210.174731 eV Core-core repulsion = 23612.921317 eV Total energy + Delta-G solvation = -3597.253415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.82545 -36.58574 -36.31761 -36.03062 -35.25572 -33.49263 -31.67271 -30.08112 -29.28544 -26.73533 -26.20438 -25.72758 -25.23455 -24.69874 -22.45718 -20.99058 -19.43998 -18.43792 -17.40371 -16.46643 -16.15100 -15.95203 -15.62386 -15.07096 -14.83057 -14.74463 -14.04056 -13.86080 -13.56886 -13.32471 -13.10453 -12.98112 -12.86885 -12.62565 -12.61045 -12.50702 -12.10179 -12.01698 -11.85424 -11.49490 -11.37588 -11.23538 -11.22292 -11.06376 -11.02236 -10.93275 -10.70657 -10.40703 -10.28233 -10.11696 -9.66456 -9.63535 -9.13085 -8.83032 -8.65229 -8.40783 -8.36521 -6.04044 -4.16293 0.70609 1.31993 1.36834 3.03049 3.26390 3.31934 3.33396 3.63917 4.30754 4.38568 4.62742 4.77933 4.81856 4.92572 4.99857 5.14427 5.21040 5.27444 5.43955 5.48010 5.52788 5.54934 5.61198 5.65342 5.71984 5.72185 5.80104 5.82895 5.97423 6.01220 6.24612 6.34811 6.35730 6.48137 6.59716 6.68840 6.69347 6.78365 6.89431 7.02430 7.18220 7.30296 7.49272 7.66663 7.96718 8.08111 8.31745 8.81745 9.49035 10.97329 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016146 B = 0.004351 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.714372 B = 6433.251432 C = 7321.310436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.114 4.114 4 C -0.112 4.112 5 C -0.069 4.069 6 C -0.123 4.123 7 C 0.150 3.850 8 N -0.968 5.968 9 C 0.096 3.904 10 S 2.586 3.414 11 O -0.949 6.949 12 O -0.958 6.958 13 C -0.580 4.580 14 C 0.083 3.917 15 C -0.163 4.163 16 C -0.164 4.164 17 C -0.502 4.502 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.116 4.116 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.027 0.973 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.096 0.904 44 H 0.027 0.973 45 H 0.263 0.737 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 12.521 13.605 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.132 4.132 4 C -0.131 4.131 5 C -0.072 4.072 6 C -0.180 4.180 7 C 0.057 3.943 8 N -0.799 5.799 9 C -0.048 4.048 10 S 2.686 3.314 11 O -0.939 6.939 12 O -0.948 6.948 13 C -0.714 4.714 14 C 0.081 3.919 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.203 1.203 25 C -0.136 4.136 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.046 0.954 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.045 0.955 45 H 0.073 0.927 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.823 12.648 13.042 18.259 hybrid contribution -1.395 -1.065 -0.071 1.757 sum -3.219 11.583 12.972 17.686 Atomic orbital electron populations 1.20785 0.90978 1.03067 1.02166 1.19745 0.96087 0.92645 1.00359 1.21036 0.94076 0.97456 1.00638 1.20906 0.94058 0.97088 1.01043 1.20130 0.96430 0.92407 0.98203 1.20867 0.91189 1.02559 1.03395 1.17032 0.89947 0.84630 1.02706 1.55566 1.71570 1.29882 1.22847 1.21505 1.01425 0.96694 0.85210 1.06152 0.77220 0.75849 0.72155 1.93551 1.87202 1.51687 1.61510 1.93542 1.42836 1.76091 1.82351 1.30558 1.16166 1.14279 1.10402 1.17932 0.95415 0.93186 0.85407 1.22267 0.99039 0.96948 1.03810 1.22280 0.95887 1.00196 1.03776 1.20889 1.05227 1.21074 1.06994 0.92369 1.24935 0.95774 0.96876 0.96100 1.69791 1.28128 1.40851 1.13397 0.86592 0.82008 0.81219 0.77784 1.20256 1.21136 1.20253 1.21322 0.93111 0.98409 1.00773 0.91298 0.91475 0.91291 0.85940 0.85719 0.90122 0.91408 0.91405 0.92278 0.91083 0.90695 0.86507 0.86392 0.95417 0.88622 0.94455 0.94471 0.88559 0.95461 0.92656 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.09 -1.03 5.88 -104.65 -0.62 -1.65 16 3 C -0.11 -1.26 9.70 -39.54 -0.38 -1.65 16 4 C -0.11 -1.34 9.68 -39.61 -0.38 -1.73 16 5 C -0.07 -0.98 5.72 -104.42 -0.60 -1.58 16 6 C -0.12 -1.64 9.70 36.00 0.35 -1.29 16 7 C 0.15 2.24 4.40 -83.79 -0.37 1.87 16 8 N -0.97 -14.91 2.19 -65.40 -0.14 -15.05 16 9 C 0.10 1.16 10.05 59.85 0.60 1.76 16 10 S 2.59 50.52 4.36 -107.50 -0.47 50.05 16 11 O -0.95 -20.66 14.43 -57.54 -0.83 -21.49 16 12 O -0.96 -20.47 14.92 -57.54 -0.86 -21.33 16 13 C -0.58 -11.73 5.12 37.16 0.19 -11.54 16 14 C 0.08 2.04 0.52 -155.66 -0.08 1.96 16 15 C -0.16 -4.10 7.77 37.16 0.29 -3.81 16 16 C -0.16 -4.08 7.78 37.16 0.29 -3.79 16 17 C -0.50 -13.27 8.01 -34.44 -0.28 -13.55 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 20 N -0.88 -24.21 9.35 55.43 0.52 -23.69 16 21 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.12 -1.56 9.62 -39.38 -0.38 -1.94 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.08 1.21 7.96 -51.93 -0.41 0.79 16 32 H 0.07 0.69 8.05 -51.93 -0.42 0.28 16 33 H 0.07 0.89 7.06 -51.93 -0.37 0.53 16 34 H 0.06 0.67 7.71 -51.93 -0.40 0.26 16 35 H 0.07 0.69 8.05 -51.93 -0.42 0.27 16 36 H 0.07 0.86 7.94 -51.93 -0.41 0.45 16 37 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 38 H 0.12 2.21 8.14 -51.92 -0.42 1.79 16 39 H 0.03 0.66 5.47 -51.93 -0.28 0.38 16 40 H 0.10 2.57 6.07 -51.93 -0.32 2.26 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 2.57 6.07 -51.93 -0.32 2.26 16 44 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 45 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -31.75 372.16 -9.68 -41.43 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.39 Total: 4.79 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: -1.10 Total: -35.93 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.37 Total: -38.75 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -1.69 Total: -42.82 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 50.52 SS G_CDS: -0.47 Total: 50.05 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.75 -9.68 -41.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296842607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.716 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds