Wall clock time and date at job start Tue Mar 31 2020 13:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.50699 * 115.56386 * 248.05564 * 3 2 1 5 5 O 1.20834 * 120.00146 * 145.77285 * 4 3 2 6 6 O 1.34227 * 120.00095 * 325.77395 * 4 3 2 7 7 C 1.45197 * 116.99913 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47104 * 179.97438 * 7 6 4 9 9 C 1.38639 * 119.74886 * 269.72444 * 8 7 6 10 10 C 1.37619 * 120.24878 * 179.76355 * 9 8 7 11 11 C 1.40717 * 119.74340 * 0.48270 * 10 9 8 12 12 C 1.41398 * 120.24632 * 179.79155 * 11 10 9 13 13 H 1.07997 * 119.99642 * 24.36525 * 12 11 10 14 14 C 1.39944 * 120.00211 * 204.36848 * 12 11 10 15 15 N 1.30826 * 119.99839 * 17.85610 * 14 12 11 16 16 Si 1.86795 * 119.99955 * 197.85193 * 14 12 11 17 17 H 1.48501 * 109.46981 * 60.00340 * 16 14 12 18 18 H 1.48500 * 109.46927 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47374 * 300.00030 * 16 14 12 20 20 C 1.40714 * 119.51347 * 359.76888 * 11 10 9 21 21 C 1.37621 * 119.74597 * 0.02562 * 20 11 10 22 22 C 1.53177 * 117.56431 * 102.21660 * 3 2 1 23 23 C 1.52137 * 117.52056 * 33.82730 * 3 2 1 24 24 C 1.54420 * 121.40434 * 356.66214 * 23 3 2 25 25 C 1.55040 * 102.49161 * 179.22479 * 24 23 3 26 26 C 1.54336 * 104.44606 * 37.01165 * 25 24 23 27 27 C 1.53465 * 121.85845 * 218.68267 * 23 3 2 28 28 H 1.09003 * 109.47225 * 299.99106 * 7 6 4 29 29 H 1.08999 * 109.47906 * 59.99603 * 7 6 4 30 30 H 1.07999 * 119.87591 * 359.97438 * 9 8 7 31 31 H 1.07992 * 120.12911 * 180.27715 * 10 9 8 32 32 H 0.96998 * 119.99902 * 179.97438 * 15 14 12 33 33 H 1.07994 * 120.13246 * 180.02562 * 20 11 10 34 34 H 1.08003 * 119.87901 * 179.97438 * 21 20 11 35 35 H 1.08997 * 117.52596 * 145.16659 * 22 3 2 36 36 H 1.09007 * 117.52131 * 0.02562 * 22 3 2 37 37 H 1.09000 * 110.91002 * 60.95496 * 24 23 3 38 38 H 1.09003 * 110.78339 * 297.43286 * 24 23 3 39 39 H 1.08992 * 110.45802 * 278.23243 * 25 24 23 40 40 H 1.09001 * 110.46043 * 155.78612 * 25 24 23 41 41 H 1.08991 * 110.03154 * 95.74420 * 26 25 24 42 42 H 1.09000 * 110.02611 * 217.12107 * 26 25 24 43 43 H 1.09003 * 110.08687 * 47.12616 * 27 23 3 44 44 H 1.09000 * 110.13202 * 285.58120 * 27 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.2580 0.5090 1.2610 5 8 4.2994 0.0277 1.6402 6 8 2.6801 1.4964 1.9629 7 6 3.3626 1.9361 3.1667 8 6 2.5723 3.0426 3.8165 9 6 2.8258 4.3618 3.4741 10 6 2.1069 5.3800 4.0575 11 6 1.1184 5.0784 5.0125 12 6 0.3764 6.1164 5.6219 13 1 0.2615 7.0651 5.1188 14 6 -0.2089 5.9145 6.8769 15 7 0.1996 4.9326 7.6388 16 14 -1.5732 7.0471 7.4643 17 1 -2.7167 6.9759 6.5195 18 1 -2.0209 6.6235 8.8153 19 1 -1.0671 8.4419 7.5247 20 6 0.8732 3.7361 5.3562 21 6 1.6014 2.7338 4.7568 22 6 3.3166 0.2883 -1.3272 23 6 3.3114 -1.1199 -0.7511 24 6 2.5168 -2.2608 -1.4231 25 6 3.6387 -3.1210 -2.0597 26 6 4.7946 -3.0630 -1.0387 27 6 4.5883 -1.7790 -0.2125 28 1 3.4536 1.0992 3.8591 29 1 4.3558 2.3032 2.9079 30 1 3.5880 4.5912 2.7441 31 1 2.3029 6.4067 3.7860 32 1 -0.2058 4.7928 8.5088 33 1 0.1166 3.4932 6.0875 34 1 1.4153 1.7028 5.0194 35 1 4.2528 0.8451 -1.2879 36 1 2.6926 0.4776 -2.2007 37 1 1.8474 -1.8698 -2.1893 38 1 1.9629 -2.8356 -0.6808 39 1 3.9507 -2.6950 -3.0132 40 1 3.3008 -4.1485 -2.1947 41 1 4.7611 -3.9359 -0.3868 42 1 5.7512 -3.0230 -1.5597 43 1 4.4652 -2.0279 0.8415 44 1 5.4391 -1.1100 -0.3419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297323744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:33 Heat of formation + Delta-G solvation = -23.997736 kcal Electronic energy + Delta-G solvation = -26090.123619 eV Core-core repulsion = 22358.560096 eV Total energy + Delta-G solvation = -3731.563523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.11687 -39.20609 -37.65433 -36.50744 -36.14696 -34.47765 -33.89108 -30.86281 -29.39196 -29.08371 -27.70882 -26.52700 -25.32297 -23.75697 -21.86653 -21.11159 -20.77008 -20.11102 -19.73667 -18.51180 -17.41014 -16.73524 -16.32441 -16.06950 -15.80544 -15.36735 -14.63006 -14.46850 -14.18101 -13.92438 -13.66299 -13.56457 -13.27217 -13.11842 -12.95582 -12.62722 -12.54711 -12.42654 -12.32784 -12.05010 -11.57478 -11.54884 -11.52408 -11.31026 -11.24527 -11.14847 -10.82920 -10.73519 -10.65563 -10.58853 -10.50942 -10.24790 -10.04596 -9.71386 -9.48551 -9.22763 -7.58256 -7.48006 -6.88718 -4.48052 1.87141 2.24158 2.42892 2.62589 2.90497 2.99424 3.01628 3.04139 3.22395 3.36949 3.48724 3.84560 4.11226 4.20886 4.33139 4.40578 4.51258 4.78450 4.89298 5.16982 5.19480 5.19846 5.29790 5.34146 5.48219 5.52787 5.56198 5.61383 5.64809 5.66089 5.76565 5.86226 6.01437 6.08161 6.10822 6.22128 6.29234 6.67314 6.85569 6.95771 7.16257 7.24568 7.36818 7.49687 7.70939 7.86828 7.94078 7.98631 8.17356 8.52052 8.76719 8.84952 10.05256 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.002315 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.111813 B =12093.567889 C =12452.641181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.244 3.756 3 C -0.051 4.051 4 C 0.502 3.498 5 O -0.497 6.497 6 O -0.342 6.342 7 C 0.137 3.863 8 C -0.239 4.239 9 C -0.062 4.062 10 C -0.231 4.231 11 C 0.119 3.881 12 C -0.455 4.455 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.785 5.785 16 Si 0.911 3.089 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.171 4.171 21 C -0.074 4.074 22 C -0.106 4.106 23 C -0.066 4.066 24 C -0.095 4.095 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.082 4.082 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.284 0.716 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 -12.666 -15.387 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C -0.074 4.074 3 C -0.056 4.056 4 C 0.344 3.656 5 O -0.385 6.385 6 O -0.258 6.258 7 C 0.065 3.935 8 C -0.240 4.240 9 C -0.080 4.080 10 C -0.250 4.250 11 C 0.117 3.883 12 C -0.484 4.484 13 H 0.099 0.901 14 C -0.144 4.144 15 N -0.409 5.409 16 Si 0.735 3.265 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.188 1.188 20 C -0.190 4.190 21 C -0.093 4.093 22 C -0.144 4.144 23 C -0.067 4.067 24 C -0.132 4.132 25 C -0.157 4.157 26 C -0.163 4.163 27 C -0.119 4.119 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.138 0.862 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.258 -12.876 -14.949 20.699 hybrid contribution -0.219 0.670 0.684 0.982 sum 6.039 -12.206 -14.265 19.722 Atomic orbital electron populations 1.81259 1.11460 1.08057 1.06785 1.26910 0.92444 0.93710 0.94316 1.17765 0.83590 1.10167 0.94079 1.21601 0.82772 0.78141 0.83131 1.90656 1.22835 1.56997 1.68040 1.86743 1.52794 1.47981 1.38288 1.21825 0.94203 0.95896 0.81537 1.18634 1.07375 0.91959 1.06064 1.20378 0.97883 0.92395 0.97365 1.20948 1.01289 0.96866 1.05948 1.17693 0.88653 0.92767 0.89225 1.19655 1.27315 1.00008 1.01408 0.90149 1.25983 0.96407 0.95664 0.96356 1.69814 1.35012 1.27258 1.08851 0.86318 0.81230 0.80757 0.78207 1.18670 1.20204 1.18841 1.21301 1.02243 0.92110 1.03343 1.20541 0.95288 0.97431 0.96026 1.23335 1.01709 0.97770 0.91552 1.22106 0.97748 0.89808 0.97053 1.22174 0.97076 0.94551 0.99391 1.22324 0.94993 0.99727 0.98616 1.22217 0.98579 0.97905 0.97598 1.21684 0.94000 0.95718 1.00524 0.91727 0.91652 0.89229 0.88660 0.90538 0.86240 0.89373 0.85866 0.86187 0.90867 0.90251 0.91176 0.91290 0.91573 0.91455 0.89457 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.57 18.54 42.15 0.78 -5.79 16 2 C 0.24 3.46 14.16 -20.76 -0.29 3.17 16 3 C -0.05 -0.60 2.52 -158.80 -0.40 -1.01 16 4 C 0.50 7.49 7.47 36.01 0.27 7.76 16 5 O -0.50 -7.61 13.57 -18.76 -0.25 -7.86 16 6 O -0.34 -6.16 9.88 -39.25 -0.39 -6.55 16 7 C 0.14 2.53 5.58 36.01 0.20 2.73 16 8 C -0.24 -5.27 5.54 -104.32 -0.58 -5.85 16 9 C -0.06 -1.38 9.67 -39.66 -0.38 -1.76 16 10 C -0.23 -5.61 9.80 -38.87 -0.38 -5.99 16 11 C 0.12 3.16 5.58 -106.82 -0.60 2.56 16 12 C -0.46 -11.88 9.05 -37.74 -0.34 -12.23 16 13 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 14 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 15 N -0.78 -19.92 10.95 55.55 0.61 -19.32 16 16 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 17 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 18 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 20 C -0.17 -4.44 8.70 -38.87 -0.34 -4.78 16 21 C -0.07 -1.76 9.67 -39.66 -0.38 -2.14 16 22 C -0.11 -0.84 9.67 -27.08 -0.26 -1.11 16 23 C -0.07 -0.58 2.24 -154.40 -0.35 -0.92 16 24 C -0.09 -0.71 5.95 -24.91 -0.15 -0.86 16 25 C -0.12 -0.70 6.83 -24.95 -0.17 -0.87 16 26 C -0.13 -0.82 6.82 -25.47 -0.17 -0.99 16 27 C -0.08 -0.71 4.88 -25.93 -0.13 -0.84 16 28 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 29 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 30 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 32 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 33 H 0.12 3.19 6.16 -52.49 -0.32 2.87 16 34 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 35 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.92 6.98 -51.93 -0.36 0.56 16 44 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -29.01 375.93 -9.30 -38.31 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.14 Total: 3.58 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -4.54 Total: -21.34 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 1.39 Total: -25.10 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.64 Total: -14.41 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.01 -9.30 -38.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297323744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.313 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds