Wall clock time and date at job start Tue Mar 31 2020 13:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.50699 * 115.56386 * 248.05564 * 3 2 1 5 5 O 1.20834 * 120.00146 * 145.77285 * 4 3 2 6 6 O 1.34227 * 120.00095 * 325.77395 * 4 3 2 7 7 C 1.45197 * 116.99913 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47104 * 179.97438 * 7 6 4 9 9 C 1.38639 * 119.74886 * 269.72444 * 8 7 6 10 10 C 1.37619 * 120.24878 * 179.76355 * 9 8 7 11 11 C 1.40717 * 119.74340 * 0.48270 * 10 9 8 12 12 C 1.41398 * 120.24632 * 179.79155 * 11 10 9 13 13 H 1.07997 * 119.99642 * 24.36525 * 12 11 10 14 14 C 1.39944 * 120.00211 * 204.36848 * 12 11 10 15 15 N 1.30826 * 119.99839 * 17.85610 * 14 12 11 16 16 Si 1.86795 * 119.99955 * 197.85193 * 14 12 11 17 17 H 1.48501 * 109.46981 * 60.00340 * 16 14 12 18 18 H 1.48500 * 109.46927 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47374 * 300.00030 * 16 14 12 20 20 C 1.40714 * 119.51347 * 359.76888 * 11 10 9 21 21 C 1.37621 * 119.74597 * 0.02562 * 20 11 10 22 22 C 1.53177 * 117.56431 * 102.21660 * 3 2 1 23 23 C 1.52137 * 117.52056 * 33.82730 * 3 2 1 24 24 C 1.54420 * 121.40434 * 356.66214 * 23 3 2 25 25 C 1.55040 * 102.49161 * 179.22479 * 24 23 3 26 26 C 1.54336 * 104.44606 * 37.01165 * 25 24 23 27 27 C 1.53465 * 121.85845 * 218.68267 * 23 3 2 28 28 H 1.09003 * 109.47225 * 299.99106 * 7 6 4 29 29 H 1.08999 * 109.47906 * 59.99603 * 7 6 4 30 30 H 1.07999 * 119.87591 * 359.97438 * 9 8 7 31 31 H 1.07992 * 120.12911 * 180.27715 * 10 9 8 32 32 H 0.96998 * 119.99902 * 179.97438 * 15 14 12 33 33 H 1.07994 * 120.13246 * 180.02562 * 20 11 10 34 34 H 1.08003 * 119.87901 * 179.97438 * 21 20 11 35 35 H 1.08997 * 117.52596 * 145.16659 * 22 3 2 36 36 H 1.09007 * 117.52131 * 0.02562 * 22 3 2 37 37 H 1.09000 * 110.91002 * 60.95496 * 24 23 3 38 38 H 1.09003 * 110.78339 * 297.43286 * 24 23 3 39 39 H 1.08992 * 110.45802 * 278.23243 * 25 24 23 40 40 H 1.09001 * 110.46043 * 155.78612 * 25 24 23 41 41 H 1.08991 * 110.03154 * 95.74420 * 26 25 24 42 42 H 1.09000 * 110.02611 * 217.12107 * 26 25 24 43 43 H 1.09003 * 110.08687 * 47.12616 * 27 23 3 44 44 H 1.09000 * 110.13202 * 285.58120 * 27 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.2580 0.5090 1.2610 5 8 4.2994 0.0277 1.6402 6 8 2.6801 1.4964 1.9629 7 6 3.3626 1.9361 3.1667 8 6 2.5723 3.0426 3.8165 9 6 2.8258 4.3618 3.4741 10 6 2.1069 5.3800 4.0575 11 6 1.1184 5.0784 5.0125 12 6 0.3764 6.1164 5.6219 13 1 0.2615 7.0651 5.1188 14 6 -0.2089 5.9145 6.8769 15 7 0.1996 4.9326 7.6388 16 14 -1.5732 7.0471 7.4643 17 1 -2.7167 6.9759 6.5195 18 1 -2.0209 6.6235 8.8153 19 1 -1.0671 8.4419 7.5247 20 6 0.8732 3.7361 5.3562 21 6 1.6014 2.7338 4.7568 22 6 3.3166 0.2883 -1.3272 23 6 3.3114 -1.1199 -0.7511 24 6 2.5168 -2.2608 -1.4231 25 6 3.6387 -3.1210 -2.0597 26 6 4.7946 -3.0630 -1.0387 27 6 4.5883 -1.7790 -0.2125 28 1 3.4536 1.0992 3.8591 29 1 4.3558 2.3032 2.9079 30 1 3.5880 4.5912 2.7441 31 1 2.3029 6.4067 3.7860 32 1 -0.2058 4.7928 8.5088 33 1 0.1166 3.4932 6.0875 34 1 1.4153 1.7028 5.0194 35 1 4.2528 0.8451 -1.2879 36 1 2.6926 0.4776 -2.2007 37 1 1.8474 -1.8698 -2.1893 38 1 1.9629 -2.8356 -0.6808 39 1 3.9507 -2.6950 -3.0132 40 1 3.3008 -4.1485 -2.1947 41 1 4.7611 -3.9359 -0.3868 42 1 5.7512 -3.0230 -1.5597 43 1 4.4652 -2.0279 0.8415 44 1 5.4391 -1.1100 -0.3419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297323744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:32 Heat of formation + Delta-G solvation = -35.726159 kcal Electronic energy + Delta-G solvation = -26090.632202 eV Core-core repulsion = 22358.560096 eV Total energy + Delta-G solvation = -3732.072106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15102 -40.28253 -39.38492 -37.65485 -37.37408 -35.71932 -35.25436 -32.63844 -31.26802 -29.67752 -29.24825 -27.56363 -26.19291 -25.32729 -23.02641 -22.96034 -21.88345 -21.43989 -20.47759 -19.56821 -19.30149 -18.03715 -17.54463 -17.13244 -17.05348 -16.36831 -16.10283 -15.69604 -15.57677 -15.29823 -14.91818 -14.73964 -14.40864 -14.28410 -13.98269 -13.92745 -13.87223 -13.79460 -13.39715 -13.35871 -13.23390 -13.07232 -12.83325 -12.43709 -12.29571 -12.16155 -12.07142 -11.84692 -11.72303 -11.63803 -11.51807 -11.40176 -11.31957 -11.25316 -11.06633 -10.90133 -9.47560 -9.37190 -8.72498 -6.42944 0.65135 0.83097 1.07875 1.30781 1.35686 1.37448 1.47221 1.50394 1.84224 2.16308 2.41335 2.62921 2.67066 3.26871 3.40563 3.55211 3.69461 3.80618 3.89861 4.04631 4.10105 4.30029 4.43176 4.46797 4.53128 4.56924 4.57430 4.61432 4.71616 4.77739 4.92754 4.97240 4.98438 5.08349 5.16585 5.22366 5.26748 5.32674 5.36116 5.37951 5.49540 5.56437 5.61464 5.84714 6.02145 6.10463 6.27009 6.28418 6.60671 6.62321 6.84828 6.93751 8.24280 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.002315 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.111813 B =12093.567889 C =12452.641181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.264 3.736 3 C -0.078 4.078 4 C 0.503 3.497 5 O -0.501 6.501 6 O -0.362 6.362 7 C 0.142 3.858 8 C -0.233 4.233 9 C -0.062 4.062 10 C -0.246 4.246 11 C 0.087 3.913 12 C -0.493 4.493 13 H 0.081 0.919 14 C 0.034 3.966 15 N -0.818 5.818 16 Si 0.984 3.016 17 H -0.262 1.262 18 H -0.266 1.266 19 H -0.255 1.255 20 C -0.197 4.197 21 C -0.083 4.083 22 C -0.079 4.079 23 C -0.055 4.055 24 C -0.097 4.097 25 C -0.112 4.112 26 C -0.122 4.122 27 C -0.084 4.084 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.291 0.709 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.027 -13.268 -17.668 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.054 4.054 3 C -0.083 4.083 4 C 0.345 3.655 5 O -0.389 6.389 6 O -0.279 6.279 7 C 0.071 3.929 8 C -0.234 4.234 9 C -0.080 4.080 10 C -0.265 4.265 11 C 0.084 3.916 12 C -0.522 4.522 13 H 0.099 0.901 14 C -0.182 4.182 15 N -0.443 5.443 16 Si 0.805 3.195 17 H -0.186 1.186 18 H -0.191 1.191 19 H -0.179 1.179 20 C -0.216 4.216 21 C -0.102 4.102 22 C -0.116 4.116 23 C -0.057 4.057 24 C -0.135 4.135 25 C -0.150 4.150 26 C -0.160 4.160 27 C -0.121 4.121 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.142 0.858 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.600 -13.497 -17.246 23.181 hybrid contribution -0.474 0.700 1.296 1.547 sum 7.126 -12.797 -15.950 21.655 Atomic orbital electron populations 1.81271 1.12898 1.09980 1.08304 1.27303 0.92888 0.92206 0.92960 1.17955 0.82206 1.13734 0.94449 1.22018 0.82769 0.77186 0.83488 1.90659 1.23209 1.56845 1.68212 1.86685 1.53462 1.49497 1.38230 1.21644 0.94199 0.94983 0.82107 1.19010 1.06096 0.93325 1.04968 1.20741 0.97980 0.91941 0.97351 1.21192 1.01296 0.98107 1.05916 1.18060 0.89842 0.93174 0.90490 1.19911 1.29319 1.00296 1.02633 0.90097 1.26851 0.98215 0.97231 0.95931 1.69867 1.36193 1.28844 1.09418 0.85214 0.77673 0.78790 0.77863 1.18647 1.19071 1.17919 1.21266 1.03181 0.92896 1.04287 1.20782 0.95500 0.97627 0.96274 1.23668 1.01781 0.96627 0.89564 1.22323 0.97299 0.90390 0.95694 1.22240 0.97647 0.94255 0.99326 1.22322 0.93810 1.00043 0.98796 1.22205 0.99635 0.96567 0.97559 1.21686 0.93907 0.96915 0.99585 0.91286 0.89600 0.85772 0.87681 0.89863 0.88039 0.88097 0.84145 0.83758 0.90041 0.91409 0.89634 0.90391 0.91685 0.90046 0.91793 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.72 18.54 20.00 0.37 -14.35 16 2 C 0.26 7.27 14.16 89.44 1.27 8.53 16 3 C -0.08 -1.71 2.52 -54.96 -0.14 -1.85 16 4 C 0.50 14.24 7.47 71.24 0.53 14.77 16 5 O -0.50 -14.52 13.57 21.94 0.30 -14.22 16 6 O -0.36 -12.59 9.88 -51.39 -0.51 -13.10 16 7 C 0.14 5.05 5.58 71.24 0.40 5.45 16 8 C -0.23 -10.13 5.54 -19.67 -0.11 -10.24 16 9 C -0.06 -2.70 9.67 22.22 0.21 -2.49 16 10 C -0.25 -12.08 9.80 22.73 0.22 -11.86 16 11 C 0.09 4.77 5.58 -21.29 -0.12 4.65 16 12 C -0.49 -26.70 9.05 23.46 0.21 -26.49 16 13 H 0.08 4.18 7.91 -2.91 -0.02 4.16 16 14 C 0.03 1.71 5.14 85.26 0.44 2.15 16 15 N -0.82 -43.00 10.95 21.83 0.24 -42.76 16 16 Si 0.98 38.17 29.59 68.60 2.03 40.20 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 18 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 19 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 20 C -0.20 -10.68 8.70 22.73 0.20 -10.49 16 21 C -0.08 -4.02 9.67 22.22 0.21 -3.81 16 22 C -0.08 -0.98 9.67 30.37 0.29 -0.69 16 23 C -0.06 -0.84 2.24 -52.11 -0.12 -0.96 16 24 C -0.10 -1.22 5.95 31.77 0.19 -1.04 16 25 C -0.11 -0.96 6.83 31.75 0.22 -0.74 16 26 C -0.12 -1.26 6.82 31.41 0.21 -1.04 16 27 C -0.08 -1.27 4.88 31.11 0.15 -1.12 16 28 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 29 H 0.09 2.69 8.07 -2.39 -0.02 2.67 16 30 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 32 H 0.29 13.78 8.30 -92.71 -0.77 13.02 16 33 H 0.10 5.75 6.16 -2.91 -0.02 5.74 16 34 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 35 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.14 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 1.29 6.98 -2.39 -0.02 1.27 16 44 H 0.08 1.16 8.04 -2.39 -0.02 1.14 16 Total: -1.00 -65.65 375.93 7.72 -57.93 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 1.01 Total: 23.55 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 4.28 Total: -37.26 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.61 Total: -57.11 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.21 Total: -27.32 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -65.65 7.72 -57.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297323744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.203 kcal (2) G-P(sol) polarization free energy of solvation -65.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds