Wall clock time and date at job start Tue Mar 31 2020 13:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00244 * 2 1 4 4 H 1.48497 * 109.47170 * 270.00135 * 3 2 1 5 5 H 1.48503 * 109.47174 * 29.99814 * 3 2 1 6 6 H 1.48502 * 109.47266 * 149.99846 * 3 2 1 7 7 C 1.37880 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00491 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47000 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47276 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00248 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99938 * 0.02562 * 12 11 10 14 14 C 1.47606 * 120.00437 * 180.02562 * 12 11 10 15 15 C 1.39735 * 120.09161 * 180.02562 * 14 12 11 16 16 C 1.37700 * 119.91037 * 180.02562 * 15 14 12 17 17 C 1.38998 * 120.08640 * 0.02562 * 16 15 14 18 18 O 1.35715 * 119.90892 * 179.97438 * 17 16 15 19 19 C 1.42893 * 117.00103 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.47555 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99737 * 269.73250 * 20 19 18 22 22 C 1.38234 * 119.99650 * 179.76278 * 21 20 19 23 23 C 1.38238 * 120.00293 * 0.48397 * 22 21 20 24 24 C 1.38234 * 119.99375 * 359.78609 * 23 22 21 25 25 C 1.38230 * 119.99766 * 89.99749 * 20 19 18 26 26 C 1.38997 * 120.18014 * 0.24824 * 17 16 15 27 27 C 1.37699 * 120.08693 * 359.45355 * 26 17 16 28 28 H 0.97008 * 120.00156 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46745 * 60.00068 * 9 7 2 30 30 H 1.09000 * 109.47151 * 300.00000 * 9 7 2 31 31 H 1.09006 * 109.46914 * 60.00059 * 10 9 7 32 32 H 1.09000 * 109.47328 * 300.00087 * 10 9 7 33 33 H 0.97005 * 119.99804 * 0.02562 * 11 10 9 34 34 H 1.08001 * 120.03993 * 0.02562 * 15 14 12 35 35 H 1.07994 * 119.95746 * 180.02562 * 16 15 14 36 36 H 1.08996 * 109.47255 * 299.99772 * 19 18 17 37 37 H 1.09004 * 109.47453 * 59.99455 * 19 18 17 38 38 H 1.07998 * 120.00412 * 359.97438 * 21 20 19 39 39 H 1.08005 * 119.99808 * 180.24837 * 22 21 20 40 40 H 1.07997 * 120.00129 * 179.77287 * 23 22 21 41 41 H 1.08003 * 119.99739 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.00422 * 0.02562 * 25 20 19 43 43 H 1.08001 * 119.95376 * 179.72103 * 26 17 16 44 44 H 1.08002 * 120.04878 * 180.27243 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5126 -4.9308 0.0032 12 6 2.1864 -6.0980 0.0028 13 8 3.4023 -6.0980 0.0014 14 6 1.4484 -7.3763 0.0040 15 6 2.1452 -8.5875 0.0041 16 6 1.4530 -9.7779 0.0047 17 6 0.0630 -9.7756 0.0046 18 8 -0.6156 -10.9509 0.0047 19 6 -2.0426 -10.8761 0.0040 20 6 -2.6187 -12.2687 0.0035 21 6 -2.8876 -12.9050 -1.1938 22 6 -3.4115 -14.1842 -1.1943 23 6 -3.6759 -14.8233 0.0026 24 6 -3.4122 -14.1847 1.2000 25 6 -2.8835 -12.9075 1.2005 26 6 -0.6338 -8.5730 -0.0012 27 6 0.0510 -7.3783 0.0044 28 1 -0.4851 0.8401 0.0004 29 1 0.6239 -2.5574 -0.8880 30 1 0.6246 -2.5563 0.8920 31 1 2.8725 -3.6040 0.8910 32 1 2.8711 -3.6048 -0.8890 33 1 0.5426 -4.9308 0.0039 34 1 3.2252 -8.5900 0.0037 35 1 1.9907 -10.7144 0.0052 36 1 -2.3789 -10.3438 0.8937 37 1 -2.3782 -10.3441 -0.8862 38 1 -2.6851 -12.4040 -2.1290 39 1 -3.6178 -14.6829 -2.1298 40 1 -4.0886 -15.8213 0.0023 41 1 -3.6192 -14.6838 2.1351 42 1 -2.6778 -12.4086 2.1359 43 1 -1.7138 -8.5755 -0.0058 44 1 -0.4911 -6.4442 0.0042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310028039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:39 Heat of formation + Delta-G solvation = -33.793853 kcal Electronic energy + Delta-G solvation = -24758.136899 eV Core-core repulsion = 21026.148584 eV Total energy + Delta-G solvation = -3731.988315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66004 -39.71808 -39.01531 -37.10306 -34.90026 -32.97619 -32.69141 -31.37537 -31.26492 -30.53287 -29.16170 -26.98091 -24.95664 -23.31105 -23.06552 -22.93800 -21.56028 -20.93956 -20.16667 -18.62331 -17.46452 -17.35341 -16.49415 -16.42901 -16.20511 -15.47568 -15.10345 -15.03269 -14.81979 -14.66725 -14.48640 -13.90691 -13.87212 -13.86387 -13.43563 -13.22811 -13.20658 -12.79970 -12.56096 -12.40911 -12.28440 -11.58986 -11.55085 -11.22712 -11.18878 -11.04517 -11.02482 -10.64354 -10.33627 -9.85130 -9.49332 -9.38570 -9.34612 -9.24052 -9.22302 -8.61803 -8.44396 -8.26411 -6.09989 -4.12690 0.73374 0.86832 0.93969 1.17661 2.80322 3.02559 3.29454 3.35505 3.39580 3.48391 3.67943 3.90787 4.20998 4.30324 4.41701 4.51426 4.54730 4.65339 4.67940 4.72334 4.82423 4.99123 5.03011 5.12884 5.16003 5.26920 5.27239 5.46733 5.47294 5.56218 5.78532 5.94233 5.97582 6.03955 6.08008 6.09256 6.23736 6.34956 6.40915 6.48809 6.50139 6.73479 6.90349 7.08425 7.50853 7.60615 7.88219 8.00401 8.27237 8.63724 8.93214 9.52178 11.01616 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024925 B = 0.001713 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.090848 B =16340.747571 C =17148.751588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.718 5.718 12 C 0.551 3.449 13 O -0.550 6.550 14 C -0.165 4.165 15 C -0.022 4.022 16 C -0.161 4.161 17 C 0.148 3.852 18 O -0.307 6.307 19 C 0.099 3.901 20 C -0.096 4.096 21 C -0.095 4.095 22 C -0.124 4.124 23 C -0.111 4.111 24 C -0.124 4.124 25 C -0.095 4.095 26 C -0.217 4.217 27 C -0.044 4.044 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.396 0.604 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.133 0.867 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.963 -29.848 0.014 31.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.367 5.367 12 C 0.338 3.662 13 O -0.430 6.430 14 C -0.169 4.169 15 C -0.041 4.041 16 C -0.179 4.179 17 C 0.102 3.898 18 O -0.220 6.220 19 C 0.024 3.976 20 C -0.096 4.096 21 C -0.113 4.113 22 C -0.142 4.142 23 C -0.129 4.129 24 C -0.142 4.142 25 C -0.113 4.113 26 C -0.236 4.236 27 C -0.063 4.063 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.230 0.770 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.151 0.849 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.180 -29.874 0.018 31.253 hybrid contribution -0.378 1.119 -0.010 1.181 sum -9.557 -28.755 0.008 30.302 Atomic orbital electron populations 1.69952 1.06094 1.26867 1.50403 1.24993 0.94896 0.99415 0.94970 0.86506 0.79850 0.82965 0.78200 1.20558 1.21178 1.19710 1.21053 0.93281 0.90356 1.51333 0.92198 1.19337 0.94234 0.91155 0.97854 1.21756 0.96075 0.81290 1.00963 1.46264 1.10482 1.06518 1.73473 1.18163 0.87285 0.83763 0.77005 1.90744 1.13463 1.87753 1.51023 1.20050 0.93565 0.94245 1.09010 1.21100 1.00805 0.89888 0.92299 1.20380 0.90676 0.99120 1.07754 1.19236 0.91834 0.84465 0.94270 1.86107 1.19511 1.28285 1.88110 1.21640 0.78699 0.94600 1.02651 1.19489 1.00866 0.95355 0.93877 1.21120 0.97658 0.94971 0.97552 1.21185 0.99611 0.95011 0.98380 1.21260 0.99114 0.99921 0.92605 1.21184 0.99585 0.95045 0.98375 1.21119 0.97636 0.94977 0.97565 1.21158 1.00374 0.91863 1.10220 1.21188 0.93113 0.98053 0.93936 0.92856 0.95920 0.95907 0.92387 0.92381 0.76953 0.83911 0.84659 0.90740 0.90746 0.85688 0.85694 0.85843 0.85696 0.85688 0.84936 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 11 N -0.72 -12.90 5.50 -61.33 -0.34 -13.24 16 12 C 0.55 9.89 7.76 -12.44 -0.10 9.80 16 13 O -0.55 -11.72 16.34 5.29 0.09 -11.63 16 14 C -0.17 -2.36 5.88 -104.95 -0.62 -2.98 16 15 C -0.02 -0.28 9.58 -39.22 -0.38 -0.66 16 16 C -0.16 -1.80 9.97 -39.50 -0.39 -2.20 16 17 C 0.15 1.61 6.70 -39.02 -0.26 1.35 16 18 O -0.31 -3.12 10.11 -18.85 -0.19 -3.31 16 19 C 0.10 0.75 4.86 36.01 0.17 0.92 16 20 C -0.10 -0.74 5.51 -104.62 -0.58 -1.31 16 21 C -0.09 -0.68 9.70 -39.58 -0.38 -1.06 16 22 C -0.12 -0.78 10.05 -39.58 -0.40 -1.17 16 23 C -0.11 -0.66 10.05 -39.58 -0.40 -1.06 16 24 C -0.12 -0.78 10.05 -39.58 -0.40 -1.17 16 25 C -0.09 -0.68 9.70 -39.58 -0.38 -1.06 16 26 C -0.22 -2.23 9.01 -39.50 -0.36 -2.59 16 27 C -0.04 -0.52 9.53 -39.22 -0.37 -0.89 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.40 6.10 6.49 -40.82 -0.27 5.84 16 34 H 0.14 1.82 7.64 -52.49 -0.40 1.42 16 35 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.07 0.48 7.61 -51.93 -0.40 0.08 16 37 H 0.07 0.48 7.58 -51.93 -0.39 0.08 16 38 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 40 H 0.12 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 1.03 6.28 -52.49 -0.33 0.70 16 44 H 0.13 1.36 6.39 -52.49 -0.34 1.03 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -33.14 378.67 -10.32 -43.46 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.89 Total: 2.55 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -5.41 Total: -14.60 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.40 Total: -38.53 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.10 Total: -14.95 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.14 -10.32 -43.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310028039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.667 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds