Wall clock time and date at job start Tue Mar 31 2020 13:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00244 * 2 1 4 4 H 1.48497 * 109.47170 * 270.00135 * 3 2 1 5 5 H 1.48503 * 109.47174 * 29.99814 * 3 2 1 6 6 H 1.48502 * 109.47266 * 149.99846 * 3 2 1 7 7 C 1.37880 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00491 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99554 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47000 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47276 * 179.97438 * 10 9 7 12 12 C 1.34769 * 120.00248 * 179.97438 * 11 10 9 13 13 O 1.21588 * 119.99938 * 0.02562 * 12 11 10 14 14 C 1.47606 * 120.00437 * 180.02562 * 12 11 10 15 15 C 1.39735 * 120.09161 * 180.02562 * 14 12 11 16 16 C 1.37700 * 119.91037 * 180.02562 * 15 14 12 17 17 C 1.38998 * 120.08640 * 0.02562 * 16 15 14 18 18 O 1.35715 * 119.90892 * 179.97438 * 17 16 15 19 19 C 1.42893 * 117.00103 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.47555 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99737 * 269.73250 * 20 19 18 22 22 C 1.38234 * 119.99650 * 179.76278 * 21 20 19 23 23 C 1.38238 * 120.00293 * 0.48397 * 22 21 20 24 24 C 1.38234 * 119.99375 * 359.78609 * 23 22 21 25 25 C 1.38230 * 119.99766 * 89.99749 * 20 19 18 26 26 C 1.38997 * 120.18014 * 0.24824 * 17 16 15 27 27 C 1.37699 * 120.08693 * 359.45355 * 26 17 16 28 28 H 0.97008 * 120.00156 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46745 * 60.00068 * 9 7 2 30 30 H 1.09000 * 109.47151 * 300.00000 * 9 7 2 31 31 H 1.09006 * 109.46914 * 60.00059 * 10 9 7 32 32 H 1.09000 * 109.47328 * 300.00087 * 10 9 7 33 33 H 0.97005 * 119.99804 * 0.02562 * 11 10 9 34 34 H 1.08001 * 120.03993 * 0.02562 * 15 14 12 35 35 H 1.07994 * 119.95746 * 180.02562 * 16 15 14 36 36 H 1.08996 * 109.47255 * 299.99772 * 19 18 17 37 37 H 1.09004 * 109.47453 * 59.99455 * 19 18 17 38 38 H 1.07998 * 120.00412 * 359.97438 * 21 20 19 39 39 H 1.08005 * 119.99808 * 180.24837 * 22 21 20 40 40 H 1.07997 * 120.00129 * 179.77287 * 23 22 21 41 41 H 1.08003 * 119.99739 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.00422 * 0.02562 * 25 20 19 43 43 H 1.08001 * 119.95376 * 179.72103 * 26 17 16 44 44 H 1.08002 * 120.04878 * 180.27243 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5126 -4.9308 0.0032 12 6 2.1864 -6.0980 0.0028 13 8 3.4023 -6.0980 0.0014 14 6 1.4484 -7.3763 0.0040 15 6 2.1452 -8.5875 0.0041 16 6 1.4530 -9.7779 0.0047 17 6 0.0630 -9.7756 0.0046 18 8 -0.6156 -10.9509 0.0047 19 6 -2.0426 -10.8761 0.0040 20 6 -2.6187 -12.2687 0.0035 21 6 -2.8876 -12.9050 -1.1938 22 6 -3.4115 -14.1842 -1.1943 23 6 -3.6759 -14.8233 0.0026 24 6 -3.4122 -14.1847 1.2000 25 6 -2.8835 -12.9075 1.2005 26 6 -0.6338 -8.5730 -0.0012 27 6 0.0510 -7.3783 0.0044 28 1 -0.4851 0.8401 0.0004 29 1 0.6239 -2.5574 -0.8880 30 1 0.6246 -2.5563 0.8920 31 1 2.8725 -3.6040 0.8910 32 1 2.8711 -3.6048 -0.8890 33 1 0.5426 -4.9308 0.0039 34 1 3.2252 -8.5900 0.0037 35 1 1.9907 -10.7144 0.0052 36 1 -2.3789 -10.3438 0.8937 37 1 -2.3782 -10.3441 -0.8862 38 1 -2.6851 -12.4040 -2.1290 39 1 -3.6178 -14.6829 -2.1298 40 1 -4.0886 -15.8213 0.0023 41 1 -3.6192 -14.6838 2.1351 42 1 -2.6778 -12.4086 2.1359 43 1 -1.7138 -8.5755 -0.0058 44 1 -0.4911 -6.4442 0.0042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310028039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:39 Heat of formation + Delta-G solvation = -52.156095 kcal Electronic energy + Delta-G solvation = -24758.933145 eV Core-core repulsion = 21026.148584 eV Total energy + Delta-G solvation = -3732.784562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54997 -40.68530 -39.84536 -38.06599 -36.63304 -34.87514 -33.35227 -32.30489 -31.82369 -31.80169 -30.60390 -27.66139 -26.74612 -24.47186 -23.85348 -23.52136 -22.85464 -22.05223 -21.45551 -19.49502 -18.73082 -18.37886 -17.96517 -17.15895 -17.05479 -16.49509 -16.47201 -16.43580 -16.02959 -15.64110 -15.54876 -15.05651 -14.89196 -14.63195 -14.40784 -14.30106 -14.24228 -13.93280 -13.50712 -13.46820 -13.27874 -13.21419 -12.94075 -12.53785 -12.27737 -12.14809 -12.10810 -11.83063 -11.79599 -11.68588 -11.47045 -10.96549 -10.60480 -10.13739 -10.10074 -9.85235 -9.82844 -9.29922 -8.24076 -6.34356 -0.15088 0.23944 0.28797 0.47305 1.42354 1.42649 1.54204 1.82295 2.13340 2.22749 2.45178 2.81512 2.96510 3.10781 3.60499 3.72905 3.78804 3.83962 3.88379 4.09690 4.15939 4.25898 4.26584 4.31213 4.40888 4.46996 4.48288 4.58660 4.60525 4.71962 4.83970 4.92882 5.02662 5.05960 5.12612 5.18332 5.25968 5.34401 5.47889 5.51967 5.57426 5.58799 5.59102 5.59617 5.78210 6.05739 6.15875 6.29697 6.58771 6.78349 7.21378 7.34850 8.87700 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024925 B = 0.001713 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.090848 B =16340.747571 C =17148.751588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.140 3.860 11 N -0.713 5.713 12 C 0.552 3.448 13 O -0.591 6.591 14 C -0.190 4.190 15 C -0.027 4.027 16 C -0.162 4.162 17 C 0.156 3.844 18 O -0.314 6.314 19 C 0.093 3.907 20 C -0.112 4.112 21 C -0.109 4.109 22 C -0.133 4.133 23 C -0.117 4.117 24 C -0.133 4.133 25 C -0.109 4.109 26 C -0.211 4.211 27 C -0.040 4.040 28 H 0.266 0.734 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.409 0.591 34 H 0.137 0.863 35 H 0.152 0.848 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.132 0.868 43 H 0.163 0.837 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.194 -31.049 0.002 33.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.364 5.364 12 C 0.341 3.659 13 O -0.473 6.473 14 C -0.193 4.193 15 C -0.046 4.046 16 C -0.181 4.181 17 C 0.109 3.891 18 O -0.228 6.228 19 C 0.019 3.981 20 C -0.112 4.112 21 C -0.127 4.127 22 C -0.150 4.150 23 C -0.135 4.135 24 C -0.150 4.150 25 C -0.127 4.127 26 C -0.229 4.229 27 C -0.059 4.059 28 H 0.075 0.925 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.246 0.754 34 H 0.155 0.845 35 H 0.169 0.831 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.180 0.820 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.443 -31.100 0.005 32.806 hybrid contribution -0.105 1.311 -0.006 1.316 sum -10.548 -29.788 -0.001 31.601 Atomic orbital electron populations 1.70050 1.07483 1.27993 1.50928 1.25853 0.95808 1.03025 0.94373 0.85447 0.78621 0.78474 0.78512 1.19775 1.20466 1.19142 1.21464 0.93606 0.91922 1.51655 0.92330 1.19148 0.94225 0.91652 0.96505 1.21274 0.95140 0.81987 0.99983 1.46053 1.11059 1.05529 1.73725 1.18707 0.86971 0.84652 0.75550 1.90711 1.15330 1.88370 1.52925 1.19796 0.94537 0.92487 1.12465 1.21094 1.00714 0.90156 0.92626 1.20507 0.91217 0.99025 1.07332 1.19350 0.91844 0.85050 0.92829 1.86112 1.21123 1.27917 1.87613 1.21872 0.77138 0.95119 1.03945 1.19611 1.01611 0.95671 0.94329 1.21340 0.97975 0.95545 0.97813 1.21479 0.99251 0.94901 0.99401 1.21589 0.98618 1.00834 0.92413 1.21478 0.99226 0.94933 0.99396 1.21339 0.97958 0.95550 0.97825 1.21420 1.01810 0.90837 1.08879 1.21331 0.92021 0.99409 0.93143 0.92529 0.97136 0.97122 0.93410 0.93381 0.75401 0.84536 0.83056 0.89401 0.89402 0.84959 0.84008 0.83834 0.84010 0.84967 0.81992 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.00 13.29 21.45 0.28 -53.71 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -30.78 9.11 25.60 0.23 -30.55 16 8 H 0.06 3.22 7.74 -2.92 -0.02 3.20 16 9 C 0.02 1.12 5.09 29.85 0.15 1.28 16 10 C 0.14 6.16 5.61 86.38 0.48 6.65 16 11 N -0.71 -25.95 5.50 -466.21 -2.57 -28.52 16 12 C 0.55 20.16 7.76 86.72 0.67 20.83 16 13 O -0.59 -25.97 16.34 -3.99 -0.07 -26.04 16 14 C -0.19 -5.37 5.88 -20.08 -0.12 -5.48 16 15 C -0.03 -0.69 9.58 22.50 0.22 -0.47 16 16 C -0.16 -3.43 9.97 22.32 0.22 -3.20 16 17 C 0.16 3.05 6.70 22.63 0.15 3.21 16 18 O -0.31 -5.70 10.11 -90.36 -0.91 -6.61 16 19 C 0.09 1.19 4.86 71.24 0.35 1.54 16 20 C -0.11 -1.54 5.51 -19.87 -0.11 -1.65 16 21 C -0.11 -1.39 9.70 22.27 0.22 -1.17 16 22 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 23 C -0.12 -1.17 10.05 22.27 0.22 -0.94 16 24 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 25 C -0.11 -1.39 9.70 22.27 0.22 -1.17 16 26 C -0.21 -3.79 9.01 22.32 0.20 -3.59 16 27 C -0.04 -0.89 9.53 22.51 0.21 -0.67 16 28 H 0.27 14.57 8.31 -92.70 -0.77 13.80 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.41 12.56 6.49 -92.70 -0.60 11.96 16 34 H 0.14 3.59 7.64 -2.91 -0.02 3.56 16 35 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.09 0.88 7.61 -2.39 -0.02 0.86 16 37 H 0.09 0.88 7.58 -2.38 -0.02 0.86 16 38 H 0.13 1.37 8.06 -2.91 -0.02 1.34 16 39 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 40 H 0.14 0.76 8.06 -2.91 -0.02 0.74 16 41 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 42 H 0.13 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.16 1.91 6.28 -2.91 -0.02 1.90 16 44 H 0.15 2.74 6.39 -2.91 -0.02 2.72 16 Total: -1.00 -71.21 378.67 3.41 -67.80 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.41 Total: 18.29 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 4.23 Total: -16.91 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -2.28 Total: -82.23 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.98 Total: -32.65 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -71.21 3.41 -67.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310028039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.640 kcal (2) G-P(sol) polarization free energy of solvation -71.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds