Wall clock time and date at job start Tue Mar 31 2020 13:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48502 * 109.46789 * 239.99788 * 3 2 1 5 5 H 1.48503 * 109.46775 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47427 * 119.99842 * 3 2 1 7 7 C 1.38625 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99777 * 180.02562 * 7 2 1 9 9 O 1.34810 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.35801 * 116.99689 * 185.05549 * 9 7 2 11 11 C 1.38894 * 119.99621 * 354.46089 * 10 9 7 12 12 C 1.38016 * 120.00598 * 179.97438 * 11 10 9 13 13 C 1.38954 * 119.99182 * 0.02562 * 12 11 10 14 14 N 1.39775 * 120.00393 * 180.02562 * 13 12 11 15 15 C 1.46501 * 120.00189 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.21477 * 325.54894 * 15 14 13 17 17 C 1.52735 * 109.25207 * 206.10527 * 15 14 13 18 18 C 1.53322 * 108.38391 * 188.54434 * 17 15 14 19 19 C 1.52730 * 108.39385 * 69.83998 * 18 17 15 20 20 C 1.50653 * 110.59609 * 308.83679 * 19 18 17 21 21 C 1.38959 * 117.69328 * 197.67057 * 20 19 18 22 22 C 1.37826 * 120.62521 * 180.62479 * 21 20 19 23 23 C 1.38766 * 119.71278 * 359.96531 * 22 21 20 24 24 O 1.35899 * 120.17367 * 179.89936 * 23 22 21 25 25 C 1.38423 * 119.65035 * 359.87800 * 23 22 21 26 26 C 1.37701 * 122.53574 * 18.01758 * 20 19 18 27 27 C 1.38952 * 119.98917 * 0.27200 * 13 12 11 28 28 C 1.38011 * 119.98866 * 359.42621 * 27 13 12 29 29 H 0.97010 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99836 * 359.97406 * 11 10 9 31 31 H 1.07998 * 120.00031 * 180.02562 * 12 11 10 32 32 H 0.97003 * 120.00164 * 359.97438 * 14 13 12 33 33 H 1.08998 * 109.68482 * 68.82379 * 17 15 14 34 34 H 1.09001 * 109.71155 * 308.28635 * 17 15 14 35 35 H 1.08994 * 109.68003 * 310.11241 * 18 17 15 36 36 H 1.09002 * 109.70824 * 189.58049 * 18 17 15 37 37 H 1.08997 * 109.24626 * 188.55047 * 19 18 17 38 38 H 1.08993 * 109.24926 * 69.12567 * 19 18 17 39 39 H 1.08002 * 119.69003 * 0.59944 * 21 20 19 40 40 H 1.08000 * 120.14496 * 179.97438 * 22 21 20 41 41 H 0.96698 * 114.00030 * 269.97432 * 24 23 22 42 42 H 1.08006 * 119.74750 * 180.02562 * 25 23 22 43 43 H 1.07996 * 120.00354 * 179.72667 * 27 13 12 44 44 H 1.08009 * 119.99582 * 180.27197 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1036 1.6962 -1.2125 5 1 1.2849 2.7464 -0.0006 6 1 3.1036 1.6964 1.2124 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3347 -2.3680 0.0016 10 6 2.0703 -3.5045 0.1087 11 6 3.4575 -3.4377 0.0949 12 6 4.2053 -4.5925 0.2042 13 6 3.5702 -5.8222 0.3276 14 7 4.3273 -6.9919 0.4390 15 6 3.6576 -8.2883 0.5697 16 1 2.7415 -8.1623 1.1468 17 6 4.5820 -9.2615 1.2984 18 6 3.9575 -10.6604 1.2360 19 6 4.0363 -11.1594 -0.2053 20 6 3.4771 -10.1310 -1.1536 21 6 3.1265 -10.5528 -2.4304 22 6 2.6212 -9.6600 -3.3508 23 6 2.4602 -8.3273 -2.9995 24 8 1.9647 -7.4385 -3.9003 25 6 2.8065 -7.9079 -1.7266 26 6 3.3134 -8.8100 -0.8010 27 6 2.1823 -5.8894 0.3352 28 6 1.4352 -4.7336 0.2321 29 1 -0.4851 0.8401 -0.0004 30 1 3.9511 -2.4819 -0.0015 31 1 5.2840 -4.5404 0.1939 32 1 5.2961 -6.9453 0.4297 33 1 4.6918 -8.9546 2.3385 34 1 5.5585 -9.2734 0.8142 35 1 2.9153 -10.6114 1.5510 36 1 4.5071 -11.3378 1.8895 37 1 3.4639 -12.0824 -0.2978 38 1 5.0775 -11.3557 -0.4612 39 1 3.2515 -11.5901 -2.7042 40 1 2.3516 -9.9962 -4.3410 41 1 2.6411 -7.0081 -4.4410 42 1 2.6815 -6.8710 -1.4514 43 1 1.6884 -6.8454 0.4267 44 1 0.3564 -4.7853 0.2424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000319638770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:42 Heat of formation + Delta-G solvation = -15.621150 kcal Electronic energy + Delta-G solvation = -26932.314911 eV Core-core repulsion = 23201.114624 eV Total energy + Delta-G solvation = -3731.200287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.59156 -38.96794 -38.01778 -36.89400 -35.32960 -34.04559 -32.12290 -31.16457 -30.04183 -29.84115 -28.58867 -26.60412 -25.07488 -23.59183 -22.87353 -22.59915 -21.46298 -20.58940 -19.83968 -18.01815 -17.77778 -17.14641 -16.50944 -16.10895 -15.69452 -15.66777 -15.11022 -14.51678 -14.44137 -14.23238 -13.81023 -13.67450 -13.59066 -13.34323 -13.15274 -12.98005 -12.67339 -12.47396 -12.37842 -12.12577 -11.81397 -11.57255 -11.44255 -11.30563 -11.14976 -11.00980 -10.86735 -10.64428 -10.58395 -10.38013 -10.35260 -9.25278 -9.21416 -8.81366 -8.45148 -8.40878 -8.16030 -6.41200 -6.31758 -3.89126 1.19715 1.32853 2.17907 2.54293 3.18990 3.20035 3.22786 3.49491 3.83185 4.06399 4.25219 4.48998 4.51525 4.67598 4.73192 4.85771 4.96263 5.04644 5.18672 5.20836 5.26374 5.35083 5.44131 5.47323 5.59384 5.63977 5.66386 5.69436 5.74935 5.85729 5.98337 6.00828 6.02966 6.20560 6.22360 6.34516 6.51855 6.53311 6.56959 6.82401 6.86600 6.92371 7.12114 7.31564 7.44032 7.63073 7.72651 7.94587 8.12225 8.21641 9.13850 9.88196 10.86826 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.002954 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.992664 B = 9477.698120 C =10345.342810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.037 3.963 3 Si 0.937 3.063 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.388 4.388 8 H 0.088 0.912 9 O -0.187 6.187 10 C 0.116 3.884 11 C -0.190 4.190 12 C -0.140 4.140 13 C 0.121 3.879 14 N -0.751 5.751 15 C 0.199 3.801 16 H 0.087 0.913 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.078 4.078 20 C -0.086 4.086 21 C -0.115 4.115 22 C -0.147 4.147 23 C 0.097 3.903 24 O -0.497 6.497 25 C -0.132 4.132 26 C -0.080 4.080 27 C -0.147 4.147 28 C -0.148 4.148 29 H 0.268 0.732 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.392 0.608 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.388 0.612 42 H 0.151 0.849 43 H 0.112 0.888 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.490 -21.636 -1.420 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.166 4.166 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.105 0.895 9 O -0.092 6.092 10 C 0.063 3.937 11 C -0.210 4.210 12 C -0.163 4.163 13 C 0.023 3.977 14 N -0.385 5.385 15 C 0.093 3.907 16 H 0.105 0.895 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.115 4.115 20 C -0.086 4.086 21 C -0.133 4.133 22 C -0.165 4.165 23 C 0.053 3.947 24 O -0.307 6.307 25 C -0.150 4.150 26 C -0.081 4.081 27 C -0.169 4.169 28 C -0.168 4.168 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.124 0.876 32 H 0.226 0.774 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.244 0.756 42 H 0.169 0.831 43 H 0.130 0.870 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.362 -21.667 -1.180 23.632 hybrid contribution 1.273 1.030 -0.479 1.706 sum 10.635 -20.637 -1.659 23.275 Atomic orbital electron populations 1.70041 1.05847 1.27403 1.47144 1.25213 0.95788 0.98606 0.97025 0.85843 0.78677 0.80224 0.79007 1.19678 1.20412 1.19676 1.21185 0.91540 0.81125 1.52613 0.89503 1.83992 1.33802 1.11125 1.80234 1.19236 0.90124 0.88227 0.96118 1.20985 0.93702 0.98286 1.08059 1.20222 0.98211 0.90912 1.06913 1.17371 0.90619 0.85885 1.03791 1.44278 1.06809 1.02077 1.85361 1.19475 0.96595 0.83462 0.91195 0.89532 1.21773 0.98957 0.94505 1.00882 1.21515 1.01735 0.96052 0.96174 1.20455 1.00912 0.96649 0.93490 1.19623 1.00397 0.93769 0.94842 1.20929 1.00078 0.99235 0.93050 1.21339 1.01456 0.93406 1.00329 1.18479 0.97515 0.88841 0.89911 1.84846 1.36284 1.57871 1.51697 1.22166 0.97394 1.02453 0.92998 1.20168 0.98819 0.92294 0.96868 1.20235 0.91626 0.97397 1.07672 1.20039 0.99397 0.89905 1.07483 0.92224 0.85505 0.87599 0.77435 0.90741 0.91277 0.91258 0.91078 0.90848 0.90801 0.86122 0.85864 0.75596 0.83132 0.86989 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.10 13.67 55.48 0.76 -25.34 16 2 C 0.04 1.04 5.49 -17.52 -0.10 0.94 16 3 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.39 -11.05 9.48 30.88 0.29 -10.76 16 8 H 0.09 2.28 5.20 -52.48 -0.27 2.01 16 9 O -0.19 -5.44 9.76 -0.05 0.00 -5.44 16 10 C 0.12 2.82 6.65 -39.09 -0.26 2.56 16 11 C -0.19 -4.13 9.16 -39.42 -0.36 -4.49 16 12 C -0.14 -2.53 9.89 -39.40 -0.39 -2.92 16 13 C 0.12 2.02 5.44 -83.71 -0.46 1.56 16 14 N -0.75 -9.74 4.97 -53.40 -0.27 -10.00 16 15 C 0.20 2.29 2.37 -69.25 -0.16 2.13 16 16 H 0.09 1.08 6.44 -51.93 -0.33 0.75 16 17 C -0.12 -1.05 5.43 -26.70 -0.15 -1.20 16 18 C -0.12 -0.85 5.98 -26.70 -0.16 -1.01 16 19 C -0.08 -0.60 5.67 -28.04 -0.16 -0.76 16 20 C -0.09 -0.91 5.74 -104.57 -0.60 -1.51 16 21 C -0.11 -1.19 9.60 -39.46 -0.38 -1.57 16 22 C -0.15 -1.71 9.99 -39.54 -0.40 -2.11 16 23 C 0.10 1.34 6.70 -39.32 -0.26 1.08 16 24 O -0.50 -6.90 13.51 -19.42 -0.26 -7.16 16 25 C -0.13 -1.92 8.46 -39.29 -0.33 -2.26 16 26 C -0.08 -0.99 5.53 -104.63 -0.58 -1.57 16 27 C -0.15 -2.66 6.90 -39.40 -0.27 -2.93 16 28 C -0.15 -3.19 9.98 -39.42 -0.39 -3.59 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.13 2.76 5.63 -52.49 -0.30 2.47 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.39 4.46 8.62 -40.82 -0.35 4.10 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.12 0.95 8.05 -52.49 -0.42 0.52 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.39 3.65 9.06 45.56 0.41 4.06 16 42 H 0.15 2.52 3.98 -52.48 -0.21 2.31 16 43 H 0.11 1.83 5.76 -52.49 -0.30 1.53 16 44 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -32.98 355.23 -9.26 -42.25 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -4.71 Total: 12.81 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -5.11 Total: -28.40 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.49 Total: -35.35 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.26 Total: -12.61 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.98 -9.26 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319638770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.625 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds