Wall clock time and date at job start Tue Mar 31 2020 13:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48502 * 109.46789 * 239.99788 * 3 2 1 5 5 H 1.48503 * 109.46775 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47427 * 119.99842 * 3 2 1 7 7 C 1.38625 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99777 * 180.02562 * 7 2 1 9 9 O 1.34810 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.35801 * 116.99689 * 185.05549 * 9 7 2 11 11 C 1.38894 * 119.99621 * 354.46089 * 10 9 7 12 12 C 1.38016 * 120.00598 * 179.97438 * 11 10 9 13 13 C 1.38954 * 119.99182 * 0.02562 * 12 11 10 14 14 N 1.39775 * 120.00393 * 180.02562 * 13 12 11 15 15 C 1.46501 * 120.00189 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.21477 * 325.54894 * 15 14 13 17 17 C 1.52735 * 109.25207 * 206.10527 * 15 14 13 18 18 C 1.53322 * 108.38391 * 188.54434 * 17 15 14 19 19 C 1.52730 * 108.39385 * 69.83998 * 18 17 15 20 20 C 1.50653 * 110.59609 * 308.83679 * 19 18 17 21 21 C 1.38959 * 117.69328 * 197.67057 * 20 19 18 22 22 C 1.37826 * 120.62521 * 180.62479 * 21 20 19 23 23 C 1.38766 * 119.71278 * 359.96531 * 22 21 20 24 24 O 1.35899 * 120.17367 * 179.89936 * 23 22 21 25 25 C 1.38423 * 119.65035 * 359.87800 * 23 22 21 26 26 C 1.37701 * 122.53574 * 18.01758 * 20 19 18 27 27 C 1.38952 * 119.98917 * 0.27200 * 13 12 11 28 28 C 1.38011 * 119.98866 * 359.42621 * 27 13 12 29 29 H 0.97010 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99836 * 359.97406 * 11 10 9 31 31 H 1.07998 * 120.00031 * 180.02562 * 12 11 10 32 32 H 0.97003 * 120.00164 * 359.97438 * 14 13 12 33 33 H 1.08998 * 109.68482 * 68.82379 * 17 15 14 34 34 H 1.09001 * 109.71155 * 308.28635 * 17 15 14 35 35 H 1.08994 * 109.68003 * 310.11241 * 18 17 15 36 36 H 1.09002 * 109.70824 * 189.58049 * 18 17 15 37 37 H 1.08997 * 109.24626 * 188.55047 * 19 18 17 38 38 H 1.08993 * 109.24926 * 69.12567 * 19 18 17 39 39 H 1.08002 * 119.69003 * 0.59944 * 21 20 19 40 40 H 1.08000 * 120.14496 * 179.97438 * 22 21 20 41 41 H 0.96698 * 114.00030 * 269.97432 * 24 23 22 42 42 H 1.08006 * 119.74750 * 180.02562 * 25 23 22 43 43 H 1.07996 * 120.00354 * 179.72667 * 27 13 12 44 44 H 1.08009 * 119.99582 * 180.27197 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1036 1.6962 -1.2125 5 1 1.2849 2.7464 -0.0006 6 1 3.1036 1.6964 1.2124 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2006 0.0010 9 8 1.3347 -2.3680 0.0016 10 6 2.0703 -3.5045 0.1087 11 6 3.4575 -3.4377 0.0949 12 6 4.2053 -4.5925 0.2042 13 6 3.5702 -5.8222 0.3276 14 7 4.3273 -6.9919 0.4390 15 6 3.6576 -8.2883 0.5697 16 1 2.7415 -8.1623 1.1468 17 6 4.5820 -9.2615 1.2984 18 6 3.9575 -10.6604 1.2360 19 6 4.0363 -11.1594 -0.2053 20 6 3.4771 -10.1310 -1.1536 21 6 3.1265 -10.5528 -2.4304 22 6 2.6212 -9.6600 -3.3508 23 6 2.4602 -8.3273 -2.9995 24 8 1.9647 -7.4385 -3.9003 25 6 2.8065 -7.9079 -1.7266 26 6 3.3134 -8.8100 -0.8010 27 6 2.1823 -5.8894 0.3352 28 6 1.4352 -4.7336 0.2321 29 1 -0.4851 0.8401 -0.0004 30 1 3.9511 -2.4819 -0.0015 31 1 5.2840 -4.5404 0.1939 32 1 5.2961 -6.9453 0.4297 33 1 4.6918 -8.9546 2.3385 34 1 5.5585 -9.2734 0.8142 35 1 2.9153 -10.6114 1.5510 36 1 4.5071 -11.3378 1.8895 37 1 3.4639 -12.0824 -0.2978 38 1 5.0775 -11.3557 -0.4612 39 1 3.2515 -11.5901 -2.7042 40 1 2.3516 -9.9962 -4.3410 41 1 2.6411 -7.0081 -4.4410 42 1 2.6815 -6.8710 -1.4514 43 1 1.6884 -6.8454 0.4267 44 1 0.3564 -4.7853 0.2424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319638770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:41 Heat of formation + Delta-G solvation = -37.594026 kcal Electronic energy + Delta-G solvation = -26933.267726 eV Core-core repulsion = 23201.114624 eV Total energy + Delta-G solvation = -3732.153103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58884 -40.57076 -39.15819 -38.35550 -36.38625 -35.16739 -34.09543 -32.41644 -31.54117 -30.70379 -29.71021 -28.03574 -26.91660 -24.61324 -23.98494 -23.59319 -22.77357 -22.08785 -20.67375 -19.68136 -19.00233 -18.85099 -17.80833 -17.27025 -16.73513 -16.62505 -16.31941 -16.20099 -15.59586 -15.50051 -15.28601 -15.24692 -14.66183 -14.50235 -14.32334 -14.12179 -13.96615 -13.69792 -13.52594 -13.39293 -13.18882 -12.95990 -12.83561 -12.63103 -12.46334 -12.20612 -12.09415 -11.80855 -11.72930 -11.44650 -11.32925 -11.11416 -10.89454 -10.23875 -9.80460 -9.72805 -9.30012 -8.39628 -7.96062 -6.03848 0.28746 0.38478 0.54464 0.90015 1.35998 1.47461 1.52542 2.22345 2.50044 2.78245 2.89283 3.22656 3.33473 3.63964 3.74520 3.78675 3.98657 4.08046 4.09211 4.12725 4.20428 4.32034 4.34234 4.47135 4.53989 4.64180 4.68846 4.73490 4.87660 4.92902 5.02221 5.06543 5.07684 5.09818 5.15438 5.25272 5.28088 5.41458 5.45865 5.49296 5.51607 5.57399 5.69050 5.75764 5.95202 5.97913 6.10084 6.55941 6.82532 7.02345 7.06079 7.92517 8.84794 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.002954 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.992664 B = 9477.698120 C =10345.342810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.029 4.029 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.408 4.408 8 H 0.100 0.900 9 O -0.243 6.243 10 C 0.066 3.934 11 C -0.191 4.191 12 C -0.142 4.142 13 C 0.157 3.843 14 N -0.735 5.735 15 C 0.195 3.805 16 H 0.076 0.924 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.077 4.077 20 C -0.082 4.082 21 C -0.110 4.110 22 C -0.150 4.150 23 C 0.074 3.926 24 O -0.518 6.518 25 C -0.159 4.159 26 C -0.088 4.088 27 C -0.143 4.143 28 C -0.158 4.158 29 H 0.270 0.730 30 H 0.121 0.879 31 H 0.143 0.857 32 H 0.406 0.594 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.154 0.846 40 H 0.139 0.861 41 H 0.402 0.598 42 H 0.122 0.878 43 H 0.130 0.870 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.963 -25.178 -0.930 28.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.225 4.225 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.484 4.484 8 H 0.117 0.883 9 O -0.151 6.151 10 C 0.017 3.983 11 C -0.211 4.211 12 C -0.164 4.164 13 C 0.056 3.944 14 N -0.368 5.368 15 C 0.089 3.911 16 H 0.094 0.906 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.114 4.114 20 C -0.082 4.082 21 C -0.127 4.127 22 C -0.169 4.169 23 C 0.030 3.970 24 O -0.331 6.331 25 C -0.178 4.178 26 C -0.090 4.090 27 C -0.165 4.165 28 C -0.178 4.178 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.242 0.758 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.172 0.828 40 H 0.157 0.843 41 H 0.260 0.740 42 H 0.140 0.860 43 H 0.148 0.852 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.903 -25.300 -0.688 28.409 hybrid contribution 0.311 1.677 -0.661 1.830 sum 13.214 -23.623 -1.349 27.101 Atomic orbital electron populations 1.70209 1.08041 1.28504 1.49975 1.26557 0.96833 1.02694 0.96395 0.84670 0.77344 0.74451 0.79870 1.18196 1.19837 1.18153 1.21739 0.92382 0.81726 1.52565 0.88304 1.83942 1.35596 1.12350 1.83174 1.19678 0.91538 0.87841 0.99263 1.21054 0.92750 0.99501 1.07773 1.20499 0.99818 0.89967 1.06144 1.17438 0.90325 0.87054 0.99591 1.44358 1.07412 1.01567 1.83494 1.19689 0.97035 0.83112 0.91229 0.90641 1.21763 0.98587 0.94318 1.00771 1.21540 1.01698 0.95496 0.96521 1.20557 1.01955 0.96139 0.92700 1.20014 0.99054 0.93525 0.95631 1.21348 0.98387 1.00500 0.92497 1.21561 1.01240 0.92528 1.01546 1.18733 0.98573 0.89877 0.89842 1.84797 1.37700 1.58436 1.52139 1.22042 0.99849 1.01607 0.94288 1.20220 0.99133 0.93057 0.96554 1.20337 0.92372 0.96777 1.07017 1.20174 0.99373 0.90373 1.07842 0.92141 0.86113 0.83953 0.75818 0.90028 0.90165 0.91866 0.88599 0.89019 0.89056 0.82843 0.84341 0.73989 0.86050 0.85206 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.24 13.67 21.61 0.30 -58.95 16 2 C -0.03 -1.69 5.49 84.82 0.47 -1.22 16 3 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.41 -24.61 9.48 67.91 0.64 -23.96 16 8 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 9 O -0.24 -15.29 9.76 -23.11 -0.23 -15.51 16 10 C 0.07 3.47 6.65 22.59 0.15 3.62 16 11 C -0.19 -8.54 9.16 22.37 0.20 -8.33 16 12 C -0.14 -4.97 9.89 22.39 0.22 -4.75 16 13 C 0.16 5.04 5.44 38.22 0.21 5.25 16 14 N -0.73 -17.08 4.97 -322.86 -1.61 -18.69 16 15 C 0.20 3.96 2.37 44.14 0.10 4.06 16 16 H 0.08 1.74 6.44 -2.39 -0.02 1.72 16 17 C -0.12 -1.49 5.43 30.61 0.17 -1.33 16 18 C -0.11 -1.13 5.98 30.61 0.18 -0.95 16 19 C -0.08 -0.78 5.67 29.74 0.17 -0.62 16 20 C -0.08 -1.43 5.74 -19.83 -0.11 -1.55 16 21 C -0.11 -1.87 9.60 22.35 0.21 -1.66 16 22 C -0.15 -3.21 9.99 22.30 0.22 -2.99 16 23 C 0.07 2.03 6.70 22.44 0.15 2.18 16 24 O -0.52 -14.84 13.51 -92.41 -1.25 -16.09 16 25 C -0.16 -4.58 8.46 22.46 0.19 -4.39 16 26 C -0.09 -1.99 5.53 -19.87 -0.11 -2.10 16 27 C -0.14 -5.24 6.90 22.39 0.15 -5.08 16 28 C -0.16 -7.24 9.98 22.37 0.22 -7.01 16 29 H 0.27 15.83 8.31 -92.70 -0.77 15.05 16 30 H 0.12 5.44 5.63 -2.91 -0.02 5.43 16 31 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 32 H 0.41 7.66 8.62 -92.71 -0.80 6.86 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.90 8.10 -2.39 -0.02 0.88 16 35 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 36 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.09 0.68 8.12 -2.39 -0.02 0.66 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.15 1.61 8.05 -2.91 -0.02 1.59 16 40 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.40 7.95 9.06 -74.06 -0.67 7.28 16 42 H 0.12 4.13 3.98 -2.91 -0.01 4.12 16 43 H 0.13 4.27 5.76 -2.91 -0.02 4.25 16 44 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -78.94 355.23 2.29 -76.65 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -0.41 Total: 37.06 kcal Atomic # 6 Polarization: -54.27 SS G_CDS: 3.45 Total: -50.82 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -1.31 Total: -77.64 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.47 Total: -31.60 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -78.94 2.29 -76.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319638770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.056 kcal (2) G-P(sol) polarization free energy of solvation -78.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds