Wall clock time and date at job start Tue Mar 31 2020 14:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38260 * 120.00096 * 2 1 4 4 C 1.38203 * 119.99867 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00372 * 0.27946 * 4 3 2 6 6 C 1.38212 * 119.99702 * 359.50942 * 5 4 3 7 7 C 1.50704 * 119.99822 * 180.25563 * 6 5 4 8 8 O 1.42905 * 109.46712 * 270.20802 * 7 6 5 9 9 C 1.35907 * 116.99389 * 179.97438 * 8 7 6 10 10 C 1.38869 * 119.98460 * 359.73006 * 9 8 7 11 11 C 1.38262 * 120.24978 * 179.72036 * 10 9 8 12 12 C 1.37987 * 120.21517 * 0.55540 * 11 10 9 13 13 C 1.39636 * 119.95410 * 359.72312 * 12 11 10 14 14 C 1.47741 * 120.11987 * 180.02562 * 13 12 11 15 15 O 1.21590 * 119.99993 * 215.22211 * 14 13 12 16 16 N 1.34778 * 119.99952 * 35.22486 * 14 13 12 17 17 C 1.46494 * 120.00196 * 5.84223 * 16 14 13 18 18 C 1.36877 * 119.99691 * 185.84771 * 16 14 13 19 19 H 1.08004 * 120.00014 * 335.02043 * 18 16 14 20 20 C 1.39041 * 120.00243 * 155.02917 * 18 16 14 21 21 N 1.31366 * 119.99843 * 349.51262 * 20 18 16 22 22 Si 1.86793 * 120.00367 * 169.51651 * 20 18 16 23 23 H 1.48499 * 109.47423 * 59.99490 * 22 20 18 24 24 H 1.48498 * 109.47466 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47195 * 299.99796 * 22 20 18 26 26 C 1.38433 * 119.97877 * 180.02562 * 9 8 7 27 27 C 1.38217 * 120.00086 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46837 * 90.00193 * 1 2 3 29 29 H 1.09007 * 109.46563 * 210.00128 * 1 2 3 30 30 H 1.09001 * 109.47003 * 329.99846 * 1 2 3 31 31 H 1.07999 * 119.99822 * 0.02562 * 3 2 1 32 32 H 1.08011 * 119.99973 * 180.02562 * 4 3 2 33 33 H 1.07999 * 120.00092 * 179.71964 * 5 4 3 34 34 H 1.08991 * 109.47176 * 30.21329 * 7 6 5 35 35 H 1.09005 * 109.46642 * 150.21452 * 7 6 5 36 36 H 1.07997 * 119.87272 * 0.02562 * 10 9 8 37 37 H 1.08001 * 119.89457 * 180.27997 * 11 10 9 38 38 H 1.07997 * 120.02116 * 179.75000 * 12 11 10 39 39 H 1.08998 * 109.46956 * 24.88614 * 17 16 14 40 40 H 1.09009 * 109.47022 * 144.88536 * 17 16 14 41 41 H 1.08997 * 109.47149 * 264.88319 * 17 16 14 42 42 H 0.97003 * 120.00410 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.10602 * 359.97438 * 26 9 8 44 44 H 1.07998 * 119.99644 * 359.97229 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 -0.0001 -0.0048 6 6 3.5807 -1.1970 -0.0004 7 6 4.3343 -2.5021 -0.0003 8 8 4.5724 -2.9146 -1.3477 9 6 5.2465 -4.0812 -1.5256 10 6 5.6747 -4.8103 -0.4241 11 6 6.3560 -6.0007 -0.5988 12 6 6.6252 -6.4668 -1.8694 13 6 6.2037 -5.7377 -2.9832 14 6 6.4895 -6.2336 -4.3453 15 8 6.7363 -5.4472 -5.2392 16 7 6.4765 -7.5576 -4.5969 17 6 6.0549 -8.4972 -3.5551 18 6 6.8574 -8.0243 -5.8260 19 1 6.7800 -7.3860 -6.6938 20 6 7.3437 -9.3203 -5.9574 21 7 7.6324 -10.0252 -4.8872 22 14 7.5868 -10.0589 -7.6558 23 1 8.5552 -9.2330 -8.4209 24 1 8.1121 -11.4416 -7.5237 25 1 6.2870 -10.0892 -8.3731 26 6 5.5114 -4.5388 -2.8050 27 6 2.1982 -1.1970 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6584 2.1326 0.0004 32 1 4.1205 2.1327 0.0010 33 1 5.3517 0.0000 -0.0089 34 1 5.2866 -2.3718 0.5135 35 1 3.7451 -3.2618 0.5135 36 1 5.4705 -4.4487 0.5728 37 1 6.6824 -6.5654 0.2620 38 1 7.1611 -7.3949 -2.0022 39 1 5.3970 -7.9876 -2.8510 40 1 5.5219 -9.3312 -4.0119 41 1 6.9318 -8.8718 -3.0272 42 1 7.9720 -10.9292 -4.9788 43 1 5.1827 -3.9704 -3.6625 44 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337537318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:22 Heat of formation + Delta-G solvation = -9.654236 kcal Electronic energy + Delta-G solvation = -25838.870513 eV Core-core repulsion = 22107.928971 eV Total energy + Delta-G solvation = -3730.941543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.25314 -39.51318 -38.50067 -36.59205 -34.73445 -33.40796 -32.07995 -31.76023 -30.61365 -29.55035 -27.36351 -26.61762 -26.28081 -24.91232 -22.84639 -22.28377 -21.96786 -20.88340 -19.50090 -17.69255 -16.91548 -16.85102 -16.22750 -15.99942 -15.89359 -15.47011 -14.92112 -14.84587 -14.50453 -14.16506 -14.03837 -13.87928 -13.44145 -13.35348 -13.21822 -12.86887 -12.67015 -12.56019 -12.28542 -12.15186 -11.88769 -11.72550 -11.40337 -11.28145 -11.24219 -11.01969 -10.92004 -10.73021 -10.56144 -10.38511 -10.30908 -9.14322 -9.06009 -8.91323 -8.66984 -8.40057 -7.88958 -7.69917 -6.36732 -3.92426 0.95680 1.12201 1.41734 1.77268 3.11366 3.18665 3.22815 3.27308 3.69781 3.75041 4.11491 4.36897 4.44758 4.48733 4.61663 4.82851 4.86002 4.93864 4.97146 5.05652 5.10732 5.14002 5.22341 5.24253 5.30567 5.39244 5.51613 5.59036 5.70162 5.75049 5.81261 5.84932 5.96720 6.17391 6.27494 6.30109 6.31930 6.36226 6.52879 6.71299 6.71745 6.84379 6.92042 6.97868 7.19415 7.51707 7.60269 8.10502 8.45110 9.13581 9.35497 9.94132 10.65962 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025070 B = 0.002195 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.608723 B =12754.331843 C =13108.594915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.114 4.114 4 C -0.120 4.120 5 C -0.101 4.101 6 C -0.088 4.088 7 C 0.102 3.898 8 O -0.309 6.309 9 C 0.115 3.885 10 C -0.208 4.208 11 C -0.091 4.091 12 C -0.132 4.132 13 C -0.055 4.055 14 C 0.477 3.523 15 O -0.585 6.585 16 N -0.431 5.431 17 C 0.105 3.895 18 C -0.305 4.305 19 H 0.100 0.900 20 C 0.032 3.968 21 N -0.878 5.878 22 Si 0.931 3.069 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.273 1.273 26 C -0.109 4.109 27 C -0.096 4.096 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.139 0.861 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.270 0.730 43 H 0.134 0.866 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.336 14.396 16.008 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.138 4.138 5 C -0.119 4.119 6 C -0.088 4.088 7 C 0.027 3.973 8 O -0.224 6.224 9 C 0.070 3.930 10 C -0.227 4.227 11 C -0.109 4.109 12 C -0.151 4.151 13 C -0.059 4.059 14 C 0.266 3.734 15 O -0.470 6.470 16 N -0.148 5.148 17 C -0.038 4.038 18 C -0.433 4.433 19 H 0.118 0.882 20 C -0.172 4.172 21 N -0.517 5.517 22 Si 0.757 3.243 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.129 4.129 27 C -0.114 4.114 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.157 0.843 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.152 0.848 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.222 14.651 15.445 23.616 hybrid contribution 0.293 -0.641 -0.401 0.811 sum -9.929 14.010 15.044 22.830 Atomic orbital electron populations 1.20800 0.90988 1.02765 1.02566 1.19926 0.96237 0.93023 0.99967 1.21091 0.94321 0.97542 1.00208 1.21135 0.94309 0.97981 1.00365 1.21093 1.00138 0.91832 0.98808 1.19521 0.93639 0.93733 1.01955 1.21518 0.99182 0.93383 0.83213 1.86151 1.71727 1.36804 1.27713 1.18788 0.94247 0.85956 0.93968 1.21195 1.05863 0.98240 0.97371 1.20824 0.97808 0.95183 0.97106 1.21690 1.01089 1.00806 0.91498 1.20134 0.96694 0.94075 0.94997 1.17952 0.85129 0.83308 0.87011 1.90613 1.55168 1.55224 1.46030 1.43447 1.54795 1.03806 1.12743 1.21833 0.98976 0.92564 0.90473 1.19645 1.40028 0.97844 0.85784 0.88183 1.25417 0.95593 0.96967 0.99230 1.69940 1.41959 1.11283 1.28501 0.85924 0.78970 0.77782 0.81622 1.19646 1.20873 1.19793 1.20437 1.01074 0.96597 0.94794 1.20976 0.93304 0.97939 0.99152 0.90986 0.91443 0.91542 0.86003 0.85768 0.85751 0.91218 0.91250 0.85974 0.85781 0.84314 0.94464 0.91970 0.91458 0.92000 0.84806 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.11 -0.96 9.70 -39.59 -0.38 -1.35 16 4 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 5 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 6 C -0.09 -0.95 5.51 -104.62 -0.58 -1.53 16 7 C 0.10 1.13 4.86 36.01 0.18 1.30 16 8 O -0.31 -4.67 10.12 -19.45 -0.20 -4.87 16 9 C 0.11 1.88 6.68 -39.28 -0.26 1.62 16 10 C -0.21 -2.92 9.03 -39.34 -0.36 -3.28 16 11 C -0.09 -1.34 10.02 -39.66 -0.40 -1.73 16 12 C -0.13 -2.39 7.59 -39.15 -0.30 -2.69 16 13 C -0.06 -1.17 5.16 -104.99 -0.54 -1.72 16 14 C 0.48 12.41 7.31 -12.38 -0.09 12.32 16 15 O -0.58 -17.16 16.53 5.29 0.09 -17.07 16 16 N -0.43 -11.35 3.01 -123.32 -0.37 -11.73 16 17 C 0.10 2.37 7.09 59.84 0.42 2.79 16 18 C -0.30 -8.59 9.26 -15.00 -0.14 -8.73 16 19 H 0.10 2.94 7.40 -52.48 -0.39 2.55 16 20 C 0.03 0.84 5.15 -17.45 -0.09 0.75 16 21 N -0.88 -23.08 10.69 55.50 0.59 -22.48 16 22 Si 0.93 20.69 29.57 -169.99 -5.03 15.67 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 26 C -0.11 -2.13 9.55 -39.01 -0.37 -2.50 16 27 C -0.10 -0.96 9.36 -39.58 -0.37 -1.33 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.07 0.67 7.59 -51.93 -0.39 0.28 16 35 H 0.07 0.66 7.61 -51.93 -0.40 0.27 16 36 H 0.12 1.33 6.28 -52.49 -0.33 1.00 16 37 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.14 2.56 5.53 -52.49 -0.29 2.27 16 39 H 0.04 0.73 5.74 -51.93 -0.30 0.43 16 40 H 0.06 1.45 7.41 -51.92 -0.38 1.07 16 41 H 0.07 1.53 6.23 -51.93 -0.32 1.21 16 42 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 43 H 0.13 2.72 8.00 -52.49 -0.42 2.30 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -32.45 367.85 -9.42 -41.87 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.74 Total: 3.80 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -4.31 Total: -10.73 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 0.22 Total: -34.21 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.11 Total: -21.94 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.45 -9.42 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337537318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.219 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds