Wall clock time and date at job start Tue Mar 31 2020 14:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38260 * 120.00096 * 2 1 4 4 C 1.38203 * 119.99867 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00372 * 0.27946 * 4 3 2 6 6 C 1.38212 * 119.99702 * 359.50942 * 5 4 3 7 7 C 1.50704 * 119.99822 * 180.25563 * 6 5 4 8 8 O 1.42905 * 109.46712 * 270.20802 * 7 6 5 9 9 C 1.35907 * 116.99389 * 179.97438 * 8 7 6 10 10 C 1.38869 * 119.98460 * 359.73006 * 9 8 7 11 11 C 1.38262 * 120.24978 * 179.72036 * 10 9 8 12 12 C 1.37987 * 120.21517 * 0.55540 * 11 10 9 13 13 C 1.39636 * 119.95410 * 359.72312 * 12 11 10 14 14 C 1.47741 * 120.11987 * 180.02562 * 13 12 11 15 15 O 1.21590 * 119.99993 * 215.22211 * 14 13 12 16 16 N 1.34778 * 119.99952 * 35.22486 * 14 13 12 17 17 C 1.46494 * 120.00196 * 5.84223 * 16 14 13 18 18 C 1.36877 * 119.99691 * 185.84771 * 16 14 13 19 19 H 1.08004 * 120.00014 * 335.02043 * 18 16 14 20 20 C 1.39041 * 120.00243 * 155.02917 * 18 16 14 21 21 N 1.31366 * 119.99843 * 349.51262 * 20 18 16 22 22 Si 1.86793 * 120.00367 * 169.51651 * 20 18 16 23 23 H 1.48499 * 109.47423 * 59.99490 * 22 20 18 24 24 H 1.48498 * 109.47466 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47195 * 299.99796 * 22 20 18 26 26 C 1.38433 * 119.97877 * 180.02562 * 9 8 7 27 27 C 1.38217 * 120.00086 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46837 * 90.00193 * 1 2 3 29 29 H 1.09007 * 109.46563 * 210.00128 * 1 2 3 30 30 H 1.09001 * 109.47003 * 329.99846 * 1 2 3 31 31 H 1.07999 * 119.99822 * 0.02562 * 3 2 1 32 32 H 1.08011 * 119.99973 * 180.02562 * 4 3 2 33 33 H 1.07999 * 120.00092 * 179.71964 * 5 4 3 34 34 H 1.08991 * 109.47176 * 30.21329 * 7 6 5 35 35 H 1.09005 * 109.46642 * 150.21452 * 7 6 5 36 36 H 1.07997 * 119.87272 * 0.02562 * 10 9 8 37 37 H 1.08001 * 119.89457 * 180.27997 * 11 10 9 38 38 H 1.07997 * 120.02116 * 179.75000 * 12 11 10 39 39 H 1.08998 * 109.46956 * 24.88614 * 17 16 14 40 40 H 1.09009 * 109.47022 * 144.88536 * 17 16 14 41 41 H 1.08997 * 109.47149 * 264.88319 * 17 16 14 42 42 H 0.97003 * 120.00410 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.10602 * 359.97438 * 26 9 8 44 44 H 1.07998 * 119.99644 * 359.97229 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 -0.0001 -0.0048 6 6 3.5807 -1.1970 -0.0004 7 6 4.3343 -2.5021 -0.0003 8 8 4.5724 -2.9146 -1.3477 9 6 5.2465 -4.0812 -1.5256 10 6 5.6747 -4.8103 -0.4241 11 6 6.3560 -6.0007 -0.5988 12 6 6.6252 -6.4668 -1.8694 13 6 6.2037 -5.7377 -2.9832 14 6 6.4895 -6.2336 -4.3453 15 8 6.7363 -5.4472 -5.2392 16 7 6.4765 -7.5576 -4.5969 17 6 6.0549 -8.4972 -3.5551 18 6 6.8574 -8.0243 -5.8260 19 1 6.7800 -7.3860 -6.6938 20 6 7.3437 -9.3203 -5.9574 21 7 7.6324 -10.0252 -4.8872 22 14 7.5868 -10.0589 -7.6558 23 1 8.5552 -9.2330 -8.4209 24 1 8.1121 -11.4416 -7.5237 25 1 6.2870 -10.0892 -8.3731 26 6 5.5114 -4.5388 -2.8050 27 6 2.1982 -1.1970 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6584 2.1326 0.0004 32 1 4.1205 2.1327 0.0010 33 1 5.3517 0.0000 -0.0089 34 1 5.2866 -2.3718 0.5135 35 1 3.7451 -3.2618 0.5135 36 1 5.4705 -4.4487 0.5728 37 1 6.6824 -6.5654 0.2620 38 1 7.1611 -7.3949 -2.0022 39 1 5.3970 -7.9876 -2.8510 40 1 5.5219 -9.3312 -4.0119 41 1 6.9318 -8.8718 -3.0272 42 1 7.9720 -10.9292 -4.9788 43 1 5.1827 -3.9704 -3.6625 44 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337537318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:21 Heat of formation + Delta-G solvation = -27.235381 kcal Electronic energy + Delta-G solvation = -25839.632889 eV Core-core repulsion = 22107.928971 eV Total energy + Delta-G solvation = -3731.703918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47690 -40.62450 -39.90888 -37.98292 -36.79118 -34.13688 -33.76902 -32.77082 -32.02530 -30.90015 -28.21812 -28.00835 -27.45196 -26.75232 -24.29138 -23.32067 -23.01875 -21.78986 -20.96764 -19.26607 -18.84909 -17.66594 -17.58468 -17.12644 -17.06771 -16.87807 -16.45092 -15.98624 -15.86158 -15.73346 -15.34471 -14.85893 -14.62714 -14.43563 -14.39337 -14.07068 -13.91717 -13.60815 -13.54336 -13.39327 -13.11890 -12.99929 -12.91571 -12.76871 -12.48795 -12.40116 -12.18643 -12.10607 -12.04499 -11.77947 -11.73492 -11.06344 -10.56651 -9.96547 -9.84477 -9.73473 -9.58595 -9.19268 -8.39292 -6.06051 -0.00487 0.23229 0.43457 0.44610 1.39610 1.39731 1.50684 1.98875 2.14728 2.28771 2.77995 2.89878 3.06653 3.10046 3.66259 3.80649 3.84493 3.90773 4.01226 4.14222 4.17802 4.23772 4.28491 4.29022 4.43891 4.51546 4.56842 4.57077 4.64497 4.78237 4.82509 4.93183 4.95100 4.98320 5.10460 5.23000 5.28208 5.29217 5.38483 5.40589 5.50615 5.51221 5.58450 5.64539 5.70285 6.04459 6.06128 6.42190 6.43375 7.07446 7.33705 7.92087 8.61974 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025070 B = 0.002195 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.608723 B =12754.331843 C =13108.594915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.119 4.119 4 C -0.126 4.126 5 C -0.116 4.116 6 C -0.108 4.108 7 C 0.096 3.904 8 O -0.327 6.327 9 C 0.123 3.877 10 C -0.184 4.184 11 C -0.071 4.071 12 C -0.138 4.138 13 C -0.082 4.082 14 C 0.464 3.536 15 O -0.637 6.637 16 N -0.444 5.444 17 C 0.119 3.881 18 C -0.351 4.351 19 H 0.071 0.929 20 C 0.003 3.997 21 N -0.887 5.887 22 Si 0.995 3.005 23 H -0.276 1.276 24 H -0.264 1.264 25 H -0.267 1.267 26 C -0.132 4.132 27 C -0.111 4.111 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.133 0.867 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.278 0.722 43 H 0.107 0.893 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.966 14.439 19.152 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.136 4.136 4 C -0.144 4.144 5 C -0.134 4.134 6 C -0.108 4.108 7 C 0.022 3.978 8 O -0.242 6.242 9 C 0.078 3.922 10 C -0.203 4.203 11 C -0.089 4.089 12 C -0.157 4.157 13 C -0.085 4.085 14 C 0.255 3.745 15 O -0.526 6.526 16 N -0.160 5.160 17 C -0.024 4.024 18 C -0.479 4.479 19 H 0.089 0.911 20 C -0.201 4.201 21 N -0.525 5.525 22 Si 0.817 3.183 23 H -0.202 1.202 24 H -0.188 1.188 25 H -0.192 1.192 26 C -0.152 4.152 27 C -0.129 4.129 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.186 0.814 37 H 0.188 0.812 38 H 0.150 0.850 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.125 0.875 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.868 14.675 18.638 26.093 hybrid contribution 0.429 -0.498 -1.234 1.398 sum -10.439 14.176 17.403 24.756 Atomic orbital electron populations 1.20842 0.89427 1.03849 1.02905 1.20269 0.97566 0.92921 0.99363 1.21441 0.94487 0.98398 0.99313 1.21448 0.94756 0.98497 0.99688 1.21317 1.00710 0.92203 0.99200 1.19643 0.94065 0.93926 1.03153 1.21846 1.00576 0.94078 0.81329 1.86147 1.71232 1.36082 1.30737 1.18715 0.93729 0.86521 0.93237 1.21677 1.03114 0.96963 0.98499 1.21267 0.95822 0.95130 0.96682 1.21668 1.01439 1.00521 0.92112 1.19732 0.99983 0.95735 0.93098 1.18809 0.84011 0.82965 0.88692 1.90541 1.57324 1.56436 1.48338 1.43681 1.54774 1.04588 1.12978 1.21784 0.99098 0.91692 0.89793 1.19601 1.43311 0.98854 0.86161 0.91119 1.26183 0.94336 0.96378 1.03164 1.69988 1.40957 1.11611 1.29918 0.84989 0.78880 0.77444 0.76964 1.20166 1.18808 1.19237 1.20271 1.02592 0.96449 0.95916 1.21186 0.93377 0.98756 0.99609 0.90917 0.90861 0.90039 0.83804 0.83782 0.85120 0.89339 0.89266 0.81391 0.81202 0.84974 0.91660 0.93306 0.91638 0.91192 0.87466 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 71.24 0.71 -0.56 16 2 C -0.10 -1.66 5.88 -19.86 -0.12 -1.78 16 3 C -0.12 -1.78 9.70 22.27 0.22 -1.57 16 4 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 5 C -0.12 -2.16 9.70 22.27 0.22 -1.94 16 6 C -0.11 -2.16 5.51 -19.87 -0.11 -2.27 16 7 C 0.10 1.85 4.86 71.24 0.35 2.20 16 8 O -0.33 -9.46 10.12 -92.50 -0.94 -10.40 16 9 C 0.12 3.85 6.68 22.47 0.15 4.00 16 10 C -0.18 -4.39 9.03 22.43 0.20 -4.19 16 11 C -0.07 -1.80 10.02 22.22 0.22 -1.57 16 12 C -0.14 -4.86 7.59 22.55 0.17 -4.69 16 13 C -0.08 -3.60 5.16 -20.10 -0.10 -3.70 16 14 C 0.46 25.74 7.31 86.76 0.63 26.38 16 15 O -0.64 -40.48 16.53 -4.00 -0.07 -40.55 16 16 N -0.44 -24.60 3.01 -662.32 -1.99 -26.59 16 17 C 0.12 5.47 7.09 127.77 0.91 6.38 16 18 C -0.35 -20.86 9.26 84.10 0.78 -20.08 16 19 H 0.07 4.49 7.40 -2.91 -0.02 4.47 16 20 C 0.00 0.14 5.15 84.96 0.44 0.57 16 21 N -0.89 -46.77 10.69 21.68 0.23 -46.54 16 22 Si 0.99 42.94 29.57 68.60 2.03 44.96 16 23 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 C -0.13 -5.35 9.55 22.64 0.22 -5.14 16 27 C -0.11 -2.09 9.36 22.27 0.21 -1.88 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.73 8.09 -2.38 -0.02 0.71 16 30 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 31 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 32 H 0.14 1.59 8.06 -2.90 -0.02 1.57 16 33 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.09 1.37 7.59 -2.39 -0.02 1.35 16 35 H 0.09 1.36 7.61 -2.38 -0.02 1.34 16 36 H 0.17 2.54 6.28 -2.91 -0.02 2.52 16 37 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 38 H 0.13 4.79 5.53 -2.91 -0.02 4.78 16 39 H 0.07 2.59 5.74 -2.39 -0.01 2.57 16 40 H 0.05 2.33 7.41 -2.38 -0.02 2.31 16 41 H 0.07 3.01 6.23 -2.39 -0.01 3.00 16 42 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 43 H 0.11 4.77 8.00 -2.91 -0.02 4.75 16 44 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -76.02 367.85 5.59 -70.43 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 1.01 Total: 20.31 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: 5.31 Total: -11.63 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -1.76 Total: -73.13 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -1.00 Total: -50.94 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -76.02 5.59 -70.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337537318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.194 kcal (2) G-P(sol) polarization free energy of solvation -76.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds