Wall clock time and date at job start Tue Mar 31 2020 14:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 S 1.81401 * 109.47312 * 89.99480 * 6 5 4 8 8 O 1.42098 * 110.54185 * 291.62795 * 7 6 5 9 9 O 1.42099 * 110.54483 * 68.37381 * 7 6 5 10 10 N 1.65603 * 104.45019 * 180.02562 * 7 6 5 11 11 C 1.46499 * 119.99855 * 64.99917 * 10 7 6 12 12 C 1.53006 * 109.46751 * 164.99940 * 11 10 7 13 13 C 1.53001 * 109.47199 * 300.00198 * 12 11 10 14 14 C 1.52998 * 109.46896 * 60.00056 * 12 11 10 15 15 C 1.53001 * 109.46901 * 179.97438 * 12 11 10 16 16 C 1.50701 * 109.46905 * 179.97438 * 15 12 11 17 17 H 1.07999 * 120.00395 * 0.02562 * 16 15 12 18 18 C 1.37881 * 119.99534 * 180.02562 * 16 15 12 19 19 N 1.31511 * 120.00349 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99328 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47347 * 60.00466 * 20 18 16 22 22 H 1.48508 * 109.46861 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47482 * 300.00047 * 20 18 16 24 24 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 25 25 C 1.38234 * 120.00033 * 0.49775 * 24 5 4 26 26 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 27 27 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 28 28 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 29 29 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 32 32 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 33 33 H 0.97003 * 119.99786 * 244.99840 * 10 7 6 34 34 H 1.08995 * 109.47210 * 284.99733 * 11 10 7 35 35 H 1.08996 * 109.46886 * 45.00485 * 11 10 7 36 36 H 1.08996 * 109.47428 * 59.99905 * 13 12 11 37 37 H 1.09001 * 109.46903 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.46751 * 299.99854 * 13 12 11 39 39 H 1.09005 * 109.47428 * 60.00069 * 14 12 11 40 40 H 1.09001 * 109.46995 * 179.97438 * 14 12 11 41 41 H 1.08996 * 109.47543 * 299.99392 * 14 12 11 42 42 H 1.08996 * 109.47268 * 300.00486 * 15 12 11 43 43 H 1.09004 * 109.46517 * 60.00262 * 15 12 11 44 44 H 0.96996 * 119.99887 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.99934 * 180.25938 * 24 5 4 46 46 H 1.08001 * 120.00294 * 179.76453 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 16 6.3899 -0.0033 1.6978 8 8 6.0961 1.2325 2.3348 9 8 6.0961 -1.2414 2.3302 10 7 8.0390 -0.0023 1.5466 11 6 8.7189 1.1490 0.9480 12 6 10.2153 1.0756 1.2587 13 6 10.4229 1.0920 2.7745 14 6 10.7938 -0.2166 0.6787 15 6 10.9256 2.2777 0.6331 16 6 12.3994 2.2058 0.9397 17 1 12.7904 1.3846 1.5221 18 6 13.2485 3.1884 0.4766 19 7 12.7724 4.1886 -0.2322 20 14 15.0754 3.0987 0.8560 21 1 15.6370 1.8446 0.2929 22 1 15.7647 4.2662 0.2499 23 1 15.2769 3.1145 2.3271 24 6 3.5805 -1.1972 0.0010 25 6 2.1982 -1.1972 0.0009 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1324 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 6.1400 -0.8891 -0.5270 32 1 6.1401 0.8909 -0.5236 33 1 8.5547 -0.7641 1.8543 34 1 8.5711 1.1373 -0.1318 35 1 8.3068 2.0695 1.3614 36 1 9.9170 0.2354 3.2198 37 1 11.4890 1.0401 2.9958 38 1 10.0107 2.0126 3.1877 39 1 10.6459 -0.2283 -0.4012 40 1 11.8599 -0.2686 0.8996 41 1 10.2879 -1.0732 1.1240 42 1 10.7777 2.2656 -0.4467 43 1 10.5135 3.1985 1.0461 44 1 13.3698 4.8800 -0.5576 45 1 4.1205 -2.1325 0.0013 46 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341663768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:57 Heat of formation + Delta-G solvation = -74.644227 kcal Electronic energy + Delta-G solvation = -25400.828787 eV Core-core repulsion = 21802.513018 eV Total energy + Delta-G solvation = -3598.315769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.74028 -37.74990 -36.99524 -35.87643 -34.32184 -33.57909 -31.91633 -31.23276 -29.85447 -27.05220 -26.47568 -25.85854 -25.49425 -23.05093 -22.76103 -21.27744 -19.33088 -18.46810 -17.43609 -16.83909 -16.45198 -16.12401 -15.94817 -15.57398 -15.33723 -14.59624 -14.48292 -14.20996 -14.06638 -13.72013 -13.43126 -13.27768 -13.14096 -12.82381 -12.54915 -12.43391 -12.37992 -12.09232 -12.04012 -11.96874 -11.83570 -11.58756 -11.25725 -11.24570 -11.04576 -10.99467 -10.86411 -10.62149 -10.41686 -10.26734 -9.90884 -9.30606 -9.22324 -9.18702 -8.95060 -8.71435 -8.36997 -6.01693 -4.02438 0.13458 1.06968 1.11161 2.82155 3.31661 3.36838 3.38728 3.41381 3.75019 4.09922 4.20889 4.44169 4.52139 4.59994 4.73060 4.79440 5.09063 5.14386 5.19683 5.25640 5.28451 5.34062 5.42042 5.48049 5.53842 5.73014 5.76530 5.77921 5.82914 6.08106 6.09695 6.20551 6.22768 6.28551 6.32556 6.39871 6.65587 6.67611 6.68684 7.04921 7.08498 7.13315 7.19269 7.60603 7.73879 7.97006 8.39725 9.01934 9.60707 11.09753 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028173 B = 0.002488 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.619918 B =11249.254898 C =11698.404695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.082 4.082 3 C -0.118 4.118 4 C -0.100 4.100 5 C -0.095 4.095 6 C -0.589 4.589 7 S 2.609 3.391 8 O -0.949 6.949 9 O -0.962 6.962 10 N -1.113 6.113 11 C 0.119 3.881 12 C -0.065 4.065 13 C -0.129 4.129 14 C -0.129 4.129 15 C 0.034 3.966 16 C -0.511 4.511 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.102 4.102 25 C -0.120 4.120 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.416 0.584 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.031 0.969 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.260 0.740 45 H 0.130 0.870 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.136 -10.051 -1.676 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.136 4.136 4 C -0.119 4.119 5 C -0.097 4.097 6 C -0.715 4.715 7 S 2.701 3.299 8 O -0.939 6.939 9 O -0.952 6.952 10 N -0.875 5.875 11 C -0.006 4.006 12 C -0.067 4.067 13 C -0.186 4.186 14 C -0.186 4.186 15 C -0.004 4.004 16 C -0.549 4.549 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.718 3.282 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.121 4.121 25 C -0.138 4.138 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.253 0.747 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.050 0.950 42 H 0.036 0.964 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.148 0.852 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.643 -9.722 -1.027 23.748 hybrid contribution 1.548 -0.225 -0.596 1.674 sum -20.094 -9.947 -1.623 22.480 Atomic orbital electron populations 1.20821 0.90919 1.03042 1.02460 1.20051 0.96358 0.93232 0.98605 1.21067 0.93853 0.97897 1.00804 1.21221 0.94659 0.97683 0.98358 1.18971 0.91675 0.94388 1.04659 1.29680 1.01561 1.12679 1.27586 1.05089 0.73471 0.74491 0.76881 1.93600 1.83683 1.45514 1.71104 1.93574 1.83705 1.45213 1.72692 1.55597 1.25033 1.28783 1.78047 1.21634 0.95565 0.86883 0.96526 1.20802 0.90740 0.98755 0.96359 1.21756 1.02126 0.99856 0.94851 1.21776 1.01827 0.95198 0.99822 1.19136 0.94812 0.90869 0.95585 1.21154 0.92360 1.08195 1.33200 0.92277 1.25008 0.98586 0.95563 0.95352 1.69941 1.35196 1.11958 1.36420 0.86703 0.85598 0.77373 0.78565 1.20355 1.21435 1.20316 1.21166 0.94628 0.97513 0.98817 1.21042 0.93823 0.97848 1.01052 0.90991 0.91358 0.91303 0.85398 0.84930 0.84015 0.83871 0.74726 0.92215 0.90452 0.94838 0.91595 0.93260 0.93370 0.91382 0.95002 0.96375 0.96218 0.93002 0.85176 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.01 36.01 0.36 -0.34 16 2 C -0.08 -0.73 5.88 -104.62 -0.62 -1.35 16 3 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 4 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 5 C -0.10 -1.06 5.14 -104.63 -0.54 -1.60 16 6 C -0.59 -5.95 6.20 36.00 0.22 -5.73 16 7 S 2.61 35.01 5.44 -107.50 -0.59 34.42 16 8 O -0.95 -15.91 17.49 -57.54 -1.01 -16.92 16 9 O -0.96 -15.01 18.08 -57.54 -1.04 -16.05 16 10 N -1.11 -14.89 5.22 -10.61 -0.06 -14.94 16 11 C 0.12 1.84 5.02 -4.04 -0.02 1.82 16 12 C -0.06 -1.20 0.55 -154.51 -0.08 -1.28 16 13 C -0.13 -2.35 8.06 37.16 0.30 -2.05 16 14 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 15 C 0.03 0.80 4.04 -27.88 -0.11 0.68 16 16 C -0.51 -13.34 7.65 -34.44 -0.26 -13.60 16 17 H 0.06 1.49 5.68 -52.49 -0.30 1.20 16 18 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -25.93 13.29 55.43 0.74 -25.19 16 20 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 25 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 28 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.14 1.11 8.09 -51.92 -0.42 0.69 16 32 H 0.14 1.24 8.09 -51.92 -0.42 0.82 16 33 H 0.42 5.20 6.44 -34.47 -0.22 4.98 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.25 7.69 -51.93 -0.40 0.85 16 36 H 0.03 0.53 7.19 -51.93 -0.37 0.15 16 37 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 41 H 0.03 0.44 6.60 -51.93 -0.34 0.10 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 46 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -33.44 383.81 -10.64 -44.07 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.37 Total: 2.60 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: -2.09 Total: -29.79 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.68 Total: -40.14 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -2.05 Total: -32.98 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 35.01 SS G_CDS: -0.59 Total: 34.42 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.44 -10.64 -44.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341663768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.570 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds