Wall clock time and date at job start Tue Mar 31 2020 14:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 S 1.81401 * 109.47312 * 89.99480 * 6 5 4 8 8 O 1.42098 * 110.54185 * 291.62795 * 7 6 5 9 9 O 1.42099 * 110.54483 * 68.37381 * 7 6 5 10 10 N 1.65603 * 104.45019 * 180.02562 * 7 6 5 11 11 C 1.46499 * 119.99855 * 64.99917 * 10 7 6 12 12 C 1.53006 * 109.46751 * 164.99940 * 11 10 7 13 13 C 1.53001 * 109.47199 * 300.00198 * 12 11 10 14 14 C 1.52998 * 109.46896 * 60.00056 * 12 11 10 15 15 C 1.53001 * 109.46901 * 179.97438 * 12 11 10 16 16 C 1.50701 * 109.46905 * 179.97438 * 15 12 11 17 17 H 1.07999 * 120.00395 * 0.02562 * 16 15 12 18 18 C 1.37881 * 119.99534 * 180.02562 * 16 15 12 19 19 N 1.31511 * 120.00349 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99328 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47347 * 60.00466 * 20 18 16 22 22 H 1.48508 * 109.46861 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47482 * 300.00047 * 20 18 16 24 24 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 25 25 C 1.38234 * 120.00033 * 0.49775 * 24 5 4 26 26 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 27 27 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 28 28 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 29 29 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 32 32 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 33 33 H 0.97003 * 119.99786 * 244.99840 * 10 7 6 34 34 H 1.08995 * 109.47210 * 284.99733 * 11 10 7 35 35 H 1.08996 * 109.46886 * 45.00485 * 11 10 7 36 36 H 1.08996 * 109.47428 * 59.99905 * 13 12 11 37 37 H 1.09001 * 109.46903 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.46751 * 299.99854 * 13 12 11 39 39 H 1.09005 * 109.47428 * 60.00069 * 14 12 11 40 40 H 1.09001 * 109.46995 * 179.97438 * 14 12 11 41 41 H 1.08996 * 109.47543 * 299.99392 * 14 12 11 42 42 H 1.08996 * 109.47268 * 300.00486 * 15 12 11 43 43 H 1.09004 * 109.46517 * 60.00262 * 15 12 11 44 44 H 0.96996 * 119.99887 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.99934 * 180.25938 * 24 5 4 46 46 H 1.08001 * 120.00294 * 179.76453 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 16 6.3899 -0.0033 1.6978 8 8 6.0961 1.2325 2.3348 9 8 6.0961 -1.2414 2.3302 10 7 8.0390 -0.0023 1.5466 11 6 8.7189 1.1490 0.9480 12 6 10.2153 1.0756 1.2587 13 6 10.4229 1.0920 2.7745 14 6 10.7938 -0.2166 0.6787 15 6 10.9256 2.2777 0.6331 16 6 12.3994 2.2058 0.9397 17 1 12.7904 1.3846 1.5221 18 6 13.2485 3.1884 0.4766 19 7 12.7724 4.1886 -0.2322 20 14 15.0754 3.0987 0.8560 21 1 15.6370 1.8446 0.2929 22 1 15.7647 4.2662 0.2499 23 1 15.2769 3.1145 2.3271 24 6 3.5805 -1.1972 0.0010 25 6 2.1982 -1.1972 0.0009 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1324 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 6.1400 -0.8891 -0.5270 32 1 6.1401 0.8909 -0.5236 33 1 8.5547 -0.7641 1.8543 34 1 8.5711 1.1373 -0.1318 35 1 8.3068 2.0695 1.3614 36 1 9.9170 0.2354 3.2198 37 1 11.4890 1.0401 2.9958 38 1 10.0107 2.0126 3.1877 39 1 10.6459 -0.2283 -0.4012 40 1 11.8599 -0.2686 0.8996 41 1 10.2879 -1.0732 1.1240 42 1 10.7777 2.2656 -0.4467 43 1 10.5135 3.1985 1.0461 44 1 13.3698 4.8800 -0.5576 45 1 4.1205 -2.1325 0.0013 46 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341663768.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:56 Heat of formation + Delta-G solvation = -95.723499 kcal Electronic energy + Delta-G solvation = -25401.742853 eV Core-core repulsion = 21802.513018 eV Total energy + Delta-G solvation = -3599.229835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.43365 -39.18503 -38.16159 -37.03633 -35.21292 -35.01273 -33.63744 -31.93294 -30.52445 -28.94559 -27.90841 -27.22725 -26.16296 -24.62399 -23.75629 -21.99373 -20.40723 -19.91046 -18.62092 -18.31993 -17.75581 -17.24993 -16.79419 -16.52995 -16.40787 -16.04301 -15.71894 -15.54015 -14.93774 -14.64236 -14.43316 -14.38831 -14.10120 -13.90425 -13.88092 -13.80949 -13.26480 -13.23921 -13.20233 -13.10419 -12.90719 -12.87190 -12.68703 -12.59183 -12.26909 -12.26534 -12.16408 -11.97586 -11.91927 -11.91629 -11.48854 -10.92719 -10.82459 -10.46873 -10.37506 -9.94696 -9.47602 -8.11423 -6.17345 -0.87893 0.32838 0.39012 1.43494 1.44769 1.51762 1.75479 2.46041 2.64921 2.81175 3.18010 3.23201 3.38414 3.75278 3.94083 4.01687 4.05904 4.06837 4.16403 4.28284 4.45835 4.49016 4.50782 4.54694 4.78021 4.80758 4.81684 4.84503 4.90433 4.93983 5.02917 5.09736 5.17727 5.23716 5.24546 5.38267 5.45913 5.51408 5.53957 5.59115 5.61968 5.62076 5.86967 5.94745 5.99872 6.11859 6.37233 6.97198 7.49472 9.00334 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028173 B = 0.002488 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.619918 B =11249.254898 C =11698.404695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.131 4.131 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.566 4.566 7 S 2.612 3.388 8 O -0.991 6.991 9 O -0.986 6.986 10 N -1.108 6.108 11 C 0.125 3.875 12 C -0.063 4.063 13 C -0.127 4.127 14 C -0.125 4.125 15 C 0.037 3.963 16 C -0.514 4.514 17 H 0.066 0.934 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.953 3.047 21 H -0.267 1.267 22 H -0.290 1.290 23 H -0.272 1.272 24 C -0.116 4.116 25 C -0.128 4.128 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.422 0.578 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.034 0.966 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.000 1.000 43 H -0.011 1.011 44 H 0.259 0.741 45 H 0.143 0.857 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.152 -12.010 -2.194 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.139 4.139 5 C -0.122 4.122 6 C -0.696 4.696 7 S 2.709 3.291 8 O -0.981 6.981 9 O -0.976 6.976 10 N -0.870 5.870 11 C -0.001 4.001 12 C -0.064 4.064 13 C -0.185 4.185 14 C -0.183 4.183 15 C 0.000 4.000 16 C -0.552 4.552 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.576 5.576 20 Si 0.779 3.221 21 H -0.192 1.192 22 H -0.216 1.216 23 H -0.197 1.197 24 C -0.135 4.135 25 C -0.146 4.146 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.163 0.837 30 H 0.153 0.847 31 H 0.189 0.811 32 H 0.178 0.822 33 H 0.259 0.741 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.019 0.981 43 H 0.007 0.993 44 H 0.068 0.932 45 H 0.161 0.839 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.629 -11.704 -1.487 25.520 hybrid contribution 1.722 0.374 -0.464 1.822 sum -20.907 -11.330 -1.951 23.860 Atomic orbital electron populations 1.20886 0.88858 1.03953 1.03458 1.20457 0.97989 0.92928 0.97236 1.21381 0.93664 0.99152 1.00636 1.21466 0.95577 0.97944 0.98949 1.19156 0.92026 0.94911 1.06086 1.29463 1.01258 1.15051 1.23841 1.04808 0.73025 0.73085 0.78138 1.93546 1.84075 1.46990 1.73530 1.93536 1.83830 1.45766 1.74476 1.55377 1.25079 1.28196 1.78310 1.21437 0.93421 0.87240 0.98012 1.20655 0.92427 0.97319 0.96022 1.21732 1.01362 1.00397 0.94990 1.21725 1.00849 0.95362 1.00337 1.19020 0.94362 0.92070 0.94588 1.21583 0.93684 1.07854 1.32123 0.91571 1.25855 1.03064 0.95480 0.95545 1.70077 1.36601 1.12887 1.38035 0.85688 0.80471 0.77508 0.78476 1.19241 1.21612 1.19744 1.21477 0.95461 0.97815 0.98718 1.21409 0.93725 0.99046 1.00443 0.89814 0.90300 0.90607 0.83719 0.84726 0.81101 0.82246 0.74097 0.89853 0.91718 0.92105 0.93042 0.94634 0.92898 0.93273 0.91516 0.98144 0.99287 0.93205 0.83872 0.83225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.01 71.24 0.71 -0.40 16 2 C -0.09 -1.37 5.88 -19.86 -0.12 -1.48 16 3 C -0.13 -2.33 9.70 22.27 0.22 -2.12 16 4 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 5 C -0.12 -2.50 5.14 -19.87 -0.10 -2.60 16 6 C -0.57 -10.27 6.20 71.23 0.44 -9.83 16 7 S 2.61 67.47 5.44 -56.49 -0.31 67.17 16 8 O -0.99 -33.47 17.49 -127.65 -2.23 -35.70 16 9 O -0.99 -29.74 18.08 -127.65 -2.31 -32.05 16 10 N -1.11 -27.81 5.22 -187.49 -0.98 -28.78 16 11 C 0.13 3.74 5.02 86.38 0.43 4.17 16 12 C -0.06 -2.28 0.55 -52.18 -0.03 -2.30 16 13 C -0.13 -4.61 8.06 71.98 0.58 -4.03 16 14 C -0.13 -4.00 8.05 71.98 0.58 -3.42 16 15 C 0.04 1.80 4.04 29.85 0.12 1.93 16 16 C -0.51 -27.14 7.65 25.60 0.20 -26.94 16 17 H 0.07 3.33 5.68 -2.91 -0.02 3.32 16 18 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 19 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 20 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 24 C -0.12 -2.19 9.70 22.27 0.22 -1.97 16 25 C -0.13 -2.11 9.70 22.27 0.22 -1.89 16 26 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 28 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 29 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.17 2.09 8.09 -2.39 -0.02 2.08 16 32 H 0.16 2.40 8.09 -2.39 -0.02 2.38 16 33 H 0.42 9.53 6.44 -96.74 -0.62 8.90 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 2.11 7.69 -2.39 -0.02 2.09 16 36 H 0.06 1.83 7.19 -2.39 -0.02 1.82 16 37 H 0.05 1.98 6.62 -2.39 -0.02 1.96 16 38 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.05 1.75 6.62 -2.39 -0.02 1.73 16 41 H 0.07 1.65 6.60 -2.39 -0.02 1.63 16 42 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 43 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 44 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 45 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 46 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -73.40 383.81 0.97 -72.43 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.34 Total: 19.46 kcal Atomic # 6 Polarization: -57.00 SS G_CDS: 4.14 Total: -52.86 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -0.69 Total: -83.87 kcal Atomic # 8 Polarization: -63.21 SS G_CDS: -4.54 Total: -67.75 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 67.47 SS G_CDS: -0.31 Total: 67.17 kcal Total: -73.40 0.97 -72.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341663768.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.292 kcal (2) G-P(sol) polarization free energy of solvation -73.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds