Wall clock time and date at job start Tue Mar 31 2020 14:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38254 * 119.99724 * 2 1 4 4 C 1.38220 * 120.00116 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99685 * 0.02562 * 4 3 2 6 6 C 1.38214 * 119.99817 * 359.70821 * 5 4 3 7 7 C 1.38210 * 120.00199 * 179.97438 * 2 1 3 8 8 C 1.50698 * 120.00160 * 0.02562 * 7 2 1 9 9 O 1.42899 * 109.47507 * 180.02562 * 8 7 2 10 10 C 1.35652 * 116.99826 * 180.02562 * 9 8 7 11 11 C 1.38706 * 120.15473 * 359.97438 * 10 9 8 12 12 C 1.38054 * 120.08366 * 180.28126 * 11 10 9 13 13 C 1.38546 * 120.39080 * 359.48306 * 12 11 10 14 14 C 1.37792 * 120.29935 * 0.51905 * 13 12 11 15 15 C 1.39701 * 119.90795 * 359.73992 * 14 13 12 16 16 C 1.47539 * 120.19178 * 180.02562 * 15 14 13 17 17 O 1.21587 * 120.00093 * 179.97438 * 16 15 14 18 18 N 1.34773 * 119.99677 * 359.97438 * 16 15 14 19 19 C 1.46503 * 120.00000 * 179.97438 * 18 16 15 20 20 C 1.50694 * 109.47347 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00088 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00265 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00350 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99534 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47344 * 90.00454 * 24 22 20 26 26 H 1.48504 * 109.46929 * 209.99860 * 24 22 20 27 27 H 1.48498 * 109.47283 * 329.99824 * 24 22 20 28 28 H 1.09000 * 109.47196 * 270.01703 * 1 2 3 29 29 H 1.08997 * 109.47476 * 30.02340 * 1 2 3 30 30 H 1.09005 * 109.47107 * 150.02286 * 1 2 3 31 31 H 1.07996 * 120.00645 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.00636 * 180.02562 * 4 3 2 33 33 H 1.08002 * 120.00031 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.00047 * 180.29878 * 6 5 4 35 35 H 1.09003 * 109.47091 * 59.99502 * 8 7 2 36 36 H 1.09007 * 109.46836 * 300.00148 * 8 7 2 37 37 H 1.08002 * 119.95345 * 359.97438 * 11 10 9 38 38 H 1.08001 * 119.80301 * 179.72529 * 12 11 10 39 39 H 1.07999 * 119.85020 * 180.28091 * 13 12 11 40 40 H 1.07997 * 120.04469 * 179.76850 * 14 13 12 41 41 H 0.97002 * 120.00415 * 359.97438 * 18 16 15 42 42 H 1.09004 * 109.47216 * 300.00048 * 19 18 16 43 43 H 1.09003 * 109.47102 * 59.99765 * 19 18 16 44 44 H 0.97001 * 120.00049 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1969 0.0061 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 8 2.3732 -3.5882 0.0017 10 6 1.8547 -4.8417 0.0014 11 6 0.4801 -5.0271 0.0004 12 6 -0.0460 -6.3034 0.0059 13 6 0.7917 -7.4069 0.0016 14 6 2.1596 -7.2412 0.0026 15 6 2.7055 -5.9553 0.0024 16 6 4.1693 -5.7707 0.0029 17 8 4.6407 -4.6499 0.0023 18 7 4.9839 -6.8444 0.0040 19 6 6.4374 -6.6611 0.0039 20 6 7.1136 -8.0078 0.0059 21 1 6.5200 -8.9101 0.0076 22 6 8.4900 -8.0882 0.0067 23 7 9.0801 -9.2635 0.0090 24 14 9.5166 -6.5276 0.0061 25 1 9.7880 -6.1130 1.4060 26 1 10.8021 -6.7811 -0.6930 27 1 8.7762 -5.4483 -0.6952 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6583 2.1327 0.0004 32 1 4.1204 2.1327 0.0010 33 1 5.3517 0.0001 0.0005 34 1 4.1206 -2.1322 0.0110 35 1 0.8183 -2.5600 -0.8897 36 1 0.8176 -2.5596 0.8903 37 1 -0.1794 -4.1718 0.0004 38 1 -1.1171 -6.4425 0.0096 39 1 0.3707 -8.4015 0.0013 40 1 2.8088 -8.1043 0.0030 41 1 4.6079 -7.7385 0.0049 42 1 6.7337 -6.1067 -0.8866 43 1 6.7336 -6.1049 0.8934 44 1 10.0485 -9.3200 0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344454588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:25 Heat of formation + Delta-G solvation = -26.550853 kcal Electronic energy + Delta-G solvation = -26426.573285 eV Core-core repulsion = 22694.899050 eV Total energy + Delta-G solvation = -3731.674235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.57634 -39.52785 -38.32564 -37.22137 -34.24808 -33.26735 -32.42446 -31.95320 -31.20022 -29.80153 -27.90030 -27.37907 -26.32701 -23.90224 -22.83338 -21.93980 -21.38781 -20.87320 -19.87295 -18.50272 -17.36623 -16.79172 -16.26017 -16.12793 -15.86711 -15.29587 -15.03153 -14.81794 -14.61479 -14.46766 -14.39012 -13.94895 -13.92399 -13.45303 -13.15800 -12.88258 -12.84430 -12.59151 -12.53504 -12.29704 -12.16448 -11.96050 -11.72132 -11.40206 -11.24949 -11.02521 -10.97642 -10.87219 -10.74307 -9.94516 -9.46645 -9.15143 -9.07868 -8.82793 -8.75005 -8.71088 -8.29171 -8.01868 -6.19317 -4.21196 0.94329 1.20964 1.35528 1.36281 3.05044 3.25140 3.29289 3.35528 3.44500 3.66832 3.98534 4.09616 4.35903 4.47480 4.66395 4.70757 4.74869 4.82598 4.93132 5.03201 5.04567 5.10775 5.12060 5.16359 5.25044 5.32779 5.38818 5.43573 5.53169 5.55055 5.73453 5.79416 5.92739 6.07967 6.13378 6.20780 6.37848 6.38209 6.51124 6.57259 6.68043 6.86057 6.97442 7.11657 7.27314 7.39549 7.42913 8.17862 8.55541 8.78177 9.00491 9.41220 10.92665 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.003577 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.292783 B = 7824.901072 C =10439.442905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.083 4.083 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.125 4.125 6 C -0.085 4.085 7 C -0.095 4.095 8 C 0.098 3.902 9 O -0.272 6.272 10 C 0.182 3.818 11 C -0.224 4.224 12 C -0.061 4.061 13 C -0.167 4.167 14 C -0.048 4.048 15 C -0.159 4.159 16 C 0.544 3.456 17 O -0.537 6.537 18 N -0.703 5.703 19 C 0.222 3.778 20 C -0.543 4.543 21 H 0.079 0.921 22 C 0.078 3.922 23 N -0.893 5.893 24 Si 0.876 3.124 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.260 1.260 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.150 0.850 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.137 0.863 41 H 0.394 0.606 42 H 0.026 0.974 43 H 0.021 0.979 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.594 14.909 -0.014 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.083 4.083 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.143 4.143 6 C -0.103 4.103 7 C -0.095 4.095 8 C 0.023 3.977 9 O -0.183 6.183 10 C 0.134 3.866 11 C -0.243 4.243 12 C -0.080 4.080 13 C -0.186 4.186 14 C -0.066 4.066 15 C -0.163 4.163 16 C 0.330 3.670 17 O -0.416 6.416 18 N -0.353 5.353 19 C 0.100 3.900 20 C -0.581 4.581 21 H 0.097 0.903 22 C -0.126 4.126 23 N -0.530 5.530 24 Si 0.703 3.297 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.184 1.184 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.168 0.832 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.228 0.772 42 H 0.044 0.956 43 H 0.039 0.961 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.813 15.687 -0.016 26.062 hybrid contribution 0.263 0.216 0.027 0.342 sum -20.549 15.903 0.011 25.984 Atomic orbital electron populations 1.20831 0.91352 1.02838 1.02400 1.19544 0.95756 0.92262 1.00760 1.20884 0.94267 0.96959 1.02360 1.21179 0.94293 0.98106 0.99887 1.21257 1.00313 0.92345 1.00418 1.21423 0.93632 0.99752 0.95510 1.19380 0.94398 0.92343 1.03400 1.21528 0.91020 0.83762 1.01419 1.86353 1.33900 1.11203 1.86825 1.18987 0.91102 0.84343 0.92165 1.21186 0.93297 0.98872 1.10957 1.21047 0.99822 0.91769 0.95315 1.20985 0.93150 0.99105 1.05319 1.21309 0.95631 0.95522 0.94182 1.19659 0.93954 0.91702 1.11021 1.17977 0.85469 0.85431 0.78103 1.90718 1.76771 1.23742 1.50377 1.46104 1.08539 1.07886 1.72723 1.19484 0.75627 0.98048 0.96818 1.21094 0.92269 0.91483 1.53211 0.90277 1.24787 0.97610 0.96328 0.93875 1.69879 1.10171 1.23437 1.49557 0.86822 0.79927 0.83938 0.79057 1.19849 1.20933 1.18434 0.90999 0.91335 0.91636 0.86119 0.86189 0.85838 0.83229 0.90842 0.90873 0.85218 0.85611 0.85362 0.84559 0.77168 0.95626 0.96094 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.60 36.00 0.35 -0.50 16 2 C -0.08 -0.88 5.88 -104.63 -0.62 -1.49 16 3 C -0.13 -1.28 9.70 -39.58 -0.38 -1.66 16 4 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 5 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 6 C -0.09 -1.27 9.38 -39.58 -0.37 -1.64 16 7 C -0.10 -1.22 5.88 -104.63 -0.62 -1.84 16 8 C 0.10 1.15 3.85 36.00 0.14 1.29 16 9 O -0.27 -4.33 6.69 -40.53 -0.27 -4.60 16 10 C 0.18 2.73 6.70 -38.69 -0.26 2.48 16 11 C -0.22 -2.52 9.03 -39.48 -0.36 -2.88 16 12 C -0.06 -0.60 10.03 -39.53 -0.40 -1.00 16 13 C -0.17 -1.78 10.02 -39.63 -0.40 -2.18 16 14 C -0.05 -0.63 9.54 -39.20 -0.37 -1.00 16 15 C -0.16 -2.63 5.89 -104.84 -0.62 -3.25 16 16 C 0.54 11.23 7.76 -12.47 -0.10 11.13 16 17 O -0.54 -12.65 14.54 -16.59 -0.24 -12.89 16 18 N -0.70 -14.88 5.50 -62.53 -0.34 -15.22 16 19 C 0.22 5.58 4.50 -5.20 -0.02 5.56 16 20 C -0.54 -15.03 9.83 -34.44 -0.34 -15.37 16 21 H 0.08 2.27 7.84 -52.48 -0.41 1.85 16 22 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 23 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 24 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 6.64 -51.93 -0.34 0.08 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.15 2.67 6.37 -52.48 -0.33 2.34 16 35 H 0.07 0.72 7.01 -51.93 -0.36 0.36 16 36 H 0.07 0.72 7.66 -51.92 -0.40 0.32 16 37 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.14 1.63 6.40 -52.49 -0.34 1.29 16 41 H 0.39 7.30 6.35 -40.82 -0.26 7.04 16 42 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 43 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -33.79 366.23 -10.15 -43.94 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.67 Total: 6.07 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -5.25 Total: -13.93 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.43 Total: -41.12 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.51 Total: -17.49 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.79 -10.15 -43.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344454588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.390 kcal (2) G-P(sol) polarization free energy of solvation -33.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds