Wall clock time and date at job start Tue Mar 31 2020 14:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38254 * 119.99724 * 2 1 4 4 C 1.38220 * 120.00116 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99685 * 0.02562 * 4 3 2 6 6 C 1.38214 * 119.99817 * 359.70821 * 5 4 3 7 7 C 1.38210 * 120.00199 * 179.97438 * 2 1 3 8 8 C 1.50698 * 120.00160 * 0.02562 * 7 2 1 9 9 O 1.42899 * 109.47507 * 180.02562 * 8 7 2 10 10 C 1.35652 * 116.99826 * 180.02562 * 9 8 7 11 11 C 1.38706 * 120.15473 * 359.97438 * 10 9 8 12 12 C 1.38054 * 120.08366 * 180.28126 * 11 10 9 13 13 C 1.38546 * 120.39080 * 359.48306 * 12 11 10 14 14 C 1.37792 * 120.29935 * 0.51905 * 13 12 11 15 15 C 1.39701 * 119.90795 * 359.73992 * 14 13 12 16 16 C 1.47539 * 120.19178 * 180.02562 * 15 14 13 17 17 O 1.21587 * 120.00093 * 179.97438 * 16 15 14 18 18 N 1.34773 * 119.99677 * 359.97438 * 16 15 14 19 19 C 1.46503 * 120.00000 * 179.97438 * 18 16 15 20 20 C 1.50694 * 109.47347 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00088 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00265 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00350 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99534 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47344 * 90.00454 * 24 22 20 26 26 H 1.48504 * 109.46929 * 209.99860 * 24 22 20 27 27 H 1.48498 * 109.47283 * 329.99824 * 24 22 20 28 28 H 1.09000 * 109.47196 * 270.01703 * 1 2 3 29 29 H 1.08997 * 109.47476 * 30.02340 * 1 2 3 30 30 H 1.09005 * 109.47107 * 150.02286 * 1 2 3 31 31 H 1.07996 * 120.00645 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.00636 * 180.02562 * 4 3 2 33 33 H 1.08002 * 120.00031 * 179.97438 * 5 4 3 34 34 H 1.08004 * 120.00047 * 180.29878 * 6 5 4 35 35 H 1.09003 * 109.47091 * 59.99502 * 8 7 2 36 36 H 1.09007 * 109.46836 * 300.00148 * 8 7 2 37 37 H 1.08002 * 119.95345 * 359.97438 * 11 10 9 38 38 H 1.08001 * 119.80301 * 179.72529 * 12 11 10 39 39 H 1.07999 * 119.85020 * 180.28091 * 13 12 11 40 40 H 1.07997 * 120.04469 * 179.76850 * 14 13 12 41 41 H 0.97002 * 120.00415 * 359.97438 * 18 16 15 42 42 H 1.09004 * 109.47216 * 300.00048 * 19 18 16 43 43 H 1.09003 * 109.47102 * 59.99765 * 19 18 16 44 44 H 0.97001 * 120.00049 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1969 0.0061 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 8 2.3732 -3.5882 0.0017 10 6 1.8547 -4.8417 0.0014 11 6 0.4801 -5.0271 0.0004 12 6 -0.0460 -6.3034 0.0059 13 6 0.7917 -7.4069 0.0016 14 6 2.1596 -7.2412 0.0026 15 6 2.7055 -5.9553 0.0024 16 6 4.1693 -5.7707 0.0029 17 8 4.6407 -4.6499 0.0023 18 7 4.9839 -6.8444 0.0040 19 6 6.4374 -6.6611 0.0039 20 6 7.1136 -8.0078 0.0059 21 1 6.5200 -8.9101 0.0076 22 6 8.4900 -8.0882 0.0067 23 7 9.0801 -9.2635 0.0090 24 14 9.5166 -6.5276 0.0061 25 1 9.7880 -6.1130 1.4060 26 1 10.8021 -6.7811 -0.6930 27 1 8.7762 -5.4483 -0.6952 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6583 2.1327 0.0004 32 1 4.1204 2.1327 0.0010 33 1 5.3517 0.0001 0.0005 34 1 4.1206 -2.1322 0.0110 35 1 0.8183 -2.5600 -0.8897 36 1 0.8176 -2.5596 0.8903 37 1 -0.1794 -4.1718 0.0004 38 1 -1.1171 -6.4425 0.0096 39 1 0.3707 -8.4015 0.0013 40 1 2.8088 -8.1043 0.0030 41 1 4.6079 -7.7385 0.0049 42 1 6.7337 -6.1067 -0.8866 43 1 6.7336 -6.1049 0.8934 44 1 10.0485 -9.3200 0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344454588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:24 Heat of formation + Delta-G solvation = -46.425141 kcal Electronic energy + Delta-G solvation = -26427.435099 eV Core-core repulsion = 22694.899050 eV Total energy + Delta-G solvation = -3732.536049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65022 -40.55668 -39.70898 -38.23908 -36.16217 -34.46827 -34.07926 -32.84504 -32.37647 -30.76304 -29.77522 -28.20527 -27.16076 -25.30941 -23.98809 -23.38973 -22.38493 -21.88857 -21.32549 -19.79468 -18.88892 -17.92956 -17.73667 -17.15803 -17.09758 -16.52190 -16.16475 -16.10387 -16.04412 -15.72270 -15.48069 -15.33009 -14.77011 -14.69965 -14.40395 -14.21878 -14.15319 -13.99177 -13.49370 -13.42616 -13.11883 -13.08816 -12.90517 -12.73259 -12.65740 -12.27285 -12.14710 -11.96151 -11.89468 -11.75057 -11.67307 -10.94537 -10.78048 -10.13984 -9.87559 -9.74556 -9.56091 -9.20512 -8.42911 -6.49593 -0.09971 0.33546 0.42204 0.44209 1.29348 1.31176 1.44811 1.97248 2.11938 2.25355 2.43215 2.77073 2.87822 2.93597 3.60272 3.77087 3.86763 3.92754 4.01154 4.06490 4.13473 4.21860 4.25279 4.32449 4.43449 4.44980 4.50395 4.65311 4.72158 4.84764 4.87050 4.89858 4.93415 4.98677 5.11123 5.17413 5.24522 5.29976 5.34718 5.47721 5.49638 5.51157 5.60414 5.64174 5.81630 6.06465 6.08741 6.44076 6.50288 6.82950 7.13338 7.40069 8.71817 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.003577 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.292783 B = 7824.901072 C =10439.442905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.081 4.081 3 C -0.125 4.125 4 C -0.117 4.117 5 C -0.146 4.146 6 C -0.121 4.121 7 C -0.110 4.110 8 C 0.094 3.906 9 O -0.308 6.308 10 C 0.164 3.836 11 C -0.219 4.219 12 C -0.042 4.042 13 C -0.162 4.162 14 C -0.054 4.054 15 C -0.199 4.199 16 C 0.540 3.460 17 O -0.577 6.577 18 N -0.705 5.705 19 C 0.236 3.764 20 C -0.546 4.546 21 H 0.061 0.939 22 C 0.030 3.970 23 N -0.928 5.928 24 Si 0.935 3.065 25 H -0.265 1.265 26 H -0.269 1.269 27 H -0.265 1.265 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.163 0.837 38 H 0.172 0.828 39 H 0.162 0.838 40 H 0.139 0.861 41 H 0.405 0.595 42 H 0.010 0.990 43 H 0.009 0.991 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.755 16.492 0.019 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.142 4.142 4 C -0.135 4.135 5 C -0.164 4.164 6 C -0.139 4.139 7 C -0.111 4.111 8 C 0.020 3.980 9 O -0.220 6.220 10 C 0.116 3.884 11 C -0.237 4.237 12 C -0.060 4.060 13 C -0.180 4.180 14 C -0.072 4.072 15 C -0.203 4.203 16 C 0.329 3.671 17 O -0.458 6.458 18 N -0.356 5.356 19 C 0.112 3.888 20 C -0.584 4.584 21 H 0.079 0.921 22 C -0.171 4.171 23 N -0.567 5.567 24 Si 0.759 3.241 25 H -0.190 1.190 26 H -0.194 1.194 27 H -0.190 1.190 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.173 0.827 32 H 0.164 0.836 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.180 0.820 38 H 0.189 0.811 39 H 0.179 0.821 40 H 0.156 0.844 41 H 0.242 0.758 42 H 0.028 0.972 43 H 0.026 0.974 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.002 17.247 0.018 30.374 hybrid contribution 1.399 -0.288 0.017 1.429 sum -23.603 16.959 0.035 29.064 Atomic orbital electron populations 1.20926 0.88390 1.04302 1.03663 1.19967 0.97839 0.91286 0.99013 1.21360 0.94022 0.98284 1.00560 1.21478 0.95151 0.97956 0.98931 1.21344 1.00440 0.92939 1.01681 1.21212 0.95119 0.98646 0.98914 1.19637 0.93606 0.94106 1.03702 1.21791 0.90634 0.82228 1.03323 1.86337 1.36220 1.12368 1.87056 1.19296 0.92645 0.83656 0.92808 1.21561 0.91622 1.00937 1.09598 1.21624 1.01985 0.90556 0.91808 1.21401 0.91757 1.01247 1.03563 1.21443 0.97349 0.94147 0.94285 1.19451 0.91074 0.94086 1.15701 1.18736 0.87548 0.84368 0.76488 1.90700 1.78012 1.25077 1.52015 1.45934 1.07035 1.09049 1.73538 1.19063 0.78104 0.96201 0.95401 1.21259 0.92558 0.91841 1.52773 0.92079 1.25549 0.98830 0.99203 0.93525 1.69967 1.10881 1.25285 1.50568 0.85894 0.78686 0.80059 0.79483 1.18956 1.19376 1.18954 0.89634 0.89501 0.90627 0.82707 0.83633 0.86272 0.87660 0.88637 0.88679 0.82003 0.81060 0.82056 0.84353 0.75818 0.97238 0.97357 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.60 71.23 0.68 -0.54 16 2 C -0.08 -1.54 5.88 -19.87 -0.12 -1.66 16 3 C -0.12 -2.21 9.70 22.27 0.22 -2.00 16 4 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 5 C -0.15 -4.06 10.05 22.27 0.22 -3.84 16 6 C -0.12 -3.94 9.38 22.27 0.21 -3.73 16 7 C -0.11 -2.86 5.88 -19.87 -0.12 -2.98 16 8 C 0.09 2.15 3.85 71.24 0.27 2.42 16 9 O -0.31 -10.26 6.69 -68.75 -0.46 -10.72 16 10 C 0.16 4.90 6.70 22.84 0.15 5.06 16 11 C -0.22 -4.21 9.03 22.34 0.20 -4.01 16 12 C -0.04 -0.62 10.03 22.30 0.22 -0.40 16 13 C -0.16 -2.88 10.02 22.24 0.22 -2.66 16 14 C -0.05 -1.38 9.54 22.52 0.21 -1.17 16 15 C -0.20 -6.78 5.89 -20.01 -0.12 -6.90 16 16 C 0.54 23.84 7.76 86.70 0.67 24.51 16 17 O -0.58 -29.58 14.54 16.93 0.25 -29.34 16 18 N -0.70 -31.70 5.50 -470.00 -2.58 -34.28 16 19 C 0.24 12.49 4.50 85.63 0.38 12.88 16 20 C -0.55 -31.50 9.83 25.60 0.25 -31.25 16 21 H 0.06 3.66 7.84 -2.91 -0.02 3.63 16 22 C 0.03 1.72 5.47 84.66 0.46 2.19 16 23 N -0.93 -56.56 13.96 21.45 0.30 -56.26 16 24 Si 0.94 45.91 27.47 68.60 1.88 47.79 16 25 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.26 -13.14 6.54 99.48 0.65 -12.48 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.63 8.09 -2.39 -0.02 0.61 16 30 H 0.07 0.66 6.64 -2.38 -0.02 0.64 16 31 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.12 3.19 8.06 -2.91 -0.02 3.16 16 34 H 0.11 4.34 6.37 -2.91 -0.02 4.32 16 35 H 0.10 1.67 7.01 -2.39 -0.02 1.65 16 36 H 0.10 1.66 7.66 -2.38 -0.02 1.65 16 37 H 0.16 1.99 6.30 -2.91 -0.02 1.97 16 38 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.14 3.34 6.40 -2.91 -0.02 3.32 16 41 H 0.41 15.92 6.35 -92.71 -0.59 15.33 16 42 H 0.01 0.54 7.20 -2.38 -0.02 0.52 16 43 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -79.94 366.23 4.04 -75.90 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.39 Total: 23.20 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 4.27 Total: -16.30 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -2.28 Total: -90.54 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -0.21 Total: -40.05 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.79 kcal Total: -79.94 4.04 -75.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344454588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.477 kcal (2) G-P(sol) polarization free energy of solvation -79.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds