Wall clock time and date at job start Tue Mar 31 2020 14:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99911 * 2 1 4 4 C 1.38750 * 120.05249 * 359.72785 * 3 2 1 5 5 C 1.38127 * 119.93954 * 179.69671 * 4 3 2 6 6 C 1.38288 * 120.05688 * 0.59715 * 5 4 3 7 7 C 1.50699 * 119.94268 * 179.70174 * 6 5 4 8 8 C 1.38242 * 120.10912 * 359.67493 * 6 5 4 9 9 C 1.38168 * 120.05587 * 0.02562 * 8 6 5 10 10 C 1.50702 * 120.02779 * 179.97438 * 9 8 6 11 11 C 1.50698 * 109.47345 * 265.02427 * 10 9 8 12 12 O 1.21275 * 120.00123 * 354.99281 * 11 10 9 13 13 N 1.34779 * 119.99686 * 174.98971 * 11 10 9 14 14 C 1.37138 * 120.00149 * 6.00628 * 13 11 10 15 15 H 1.07997 * 120.00324 * 53.61779 * 14 13 11 16 16 C 1.38891 * 119.99808 * 233.61670 * 14 13 11 17 17 N 1.31421 * 119.99846 * 5.47423 * 16 14 13 18 18 Si 1.86797 * 120.00110 * 185.46639 * 16 14 13 19 19 H 1.48505 * 109.47020 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47181 * 120.00279 * 18 16 14 21 21 H 1.48499 * 109.47380 * 240.00785 * 18 16 14 22 22 C 1.39790 * 119.99667 * 186.00167 * 13 11 10 23 23 C 1.38962 * 120.07893 * 8.28260 * 22 13 11 24 24 C 1.38083 * 119.92197 * 179.78847 * 23 22 13 25 25 C 1.38312 * 120.07662 * 0.47118 * 24 23 22 26 26 C 1.38303 * 120.15696 * 359.78106 * 25 24 23 27 27 C 1.38090 * 120.07950 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47089 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47491 * 299.99751 * 1 2 3 30 30 H 1.09002 * 109.46758 * 59.99877 * 1 2 3 31 31 H 1.08004 * 120.03509 * 359.97399 * 4 3 2 32 32 H 1.08001 * 119.96953 * 180.29857 * 5 4 3 33 33 H 1.09003 * 109.47069 * 269.97304 * 7 6 5 34 34 H 1.08990 * 109.47366 * 29.97522 * 7 6 5 35 35 H 1.08997 * 109.46924 * 149.98166 * 7 6 5 36 36 H 1.07997 * 119.97479 * 180.02562 * 8 6 5 37 37 H 1.09004 * 109.46977 * 25.02744 * 10 9 8 38 38 H 1.08999 * 109.46912 * 145.02192 * 10 9 8 39 39 H 0.97001 * 120.00060 * 184.99433 * 17 16 14 40 40 H 1.08004 * 120.03698 * 0.02562 * 23 22 13 41 41 H 1.07995 * 119.96580 * 180.25631 * 24 23 22 42 42 H 1.07998 * 119.92292 * 179.77103 * 25 24 23 43 43 H 1.08005 * 119.96250 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.04322 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9208 3.6048 0.0006 6 6 3.3019 3.6759 0.0002 7 6 3.9860 5.0186 0.0003 8 6 4.0560 2.5172 0.0002 9 6 3.4311 1.2849 0.0001 10 6 4.2537 0.0222 -0.0005 11 6 4.4242 -0.4656 -1.4161 12 8 3.8524 0.0983 -2.3248 13 7 5.2123 -1.5286 -1.6722 14 6 5.7601 -2.2414 -0.6366 15 1 5.1255 -2.6333 0.1445 16 6 7.1311 -2.4594 -0.5923 17 7 7.9155 -1.8934 -1.4819 18 14 7.8600 -3.5569 0.7319 19 1 6.7727 -4.0695 1.6039 20 1 8.5639 -4.6994 0.0958 21 1 8.8228 -2.7749 1.5484 22 6 5.4711 -1.9045 -2.9935 23 6 5.0628 -1.0894 -4.0422 24 6 5.3240 -1.4618 -5.3460 25 6 5.9826 -2.6492 -5.6090 26 6 6.3859 -3.4655 -4.5679 27 6 6.1324 -3.0970 -3.2615 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.2128 2.3204 -0.0106 32 1 1.3339 4.5114 0.0011 33 1 4.1510 5.3424 -1.0273 34 1 3.3579 5.7463 0.5141 35 1 4.9439 4.9383 0.5141 36 1 5.1344 2.5753 0.0003 37 1 5.2324 0.2260 0.4340 38 1 3.7467 -0.7420 0.5886 39 1 8.8627 -2.1023 -1.4962 40 1 4.5451 -0.1639 -3.8377 41 1 5.0106 -0.8268 -6.1614 42 1 6.1824 -2.9398 -6.6298 43 1 6.8996 -4.3923 -4.7769 44 1 6.4472 -3.7350 -2.4489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345171555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:20 Heat of formation + Delta-G solvation = -23.428893 kcal Electronic energy + Delta-G solvation = -27659.499916 eV Core-core repulsion = 23927.961060 eV Total energy + Delta-G solvation = -3731.538857 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67292 -40.91402 -38.93699 -38.48205 -36.75755 -34.20959 -33.72891 -32.48017 -31.39479 -30.77789 -28.70186 -28.49111 -27.01015 -26.65679 -23.82685 -23.09945 -22.71423 -21.79471 -20.91908 -19.48594 -18.78294 -17.96458 -17.48887 -17.27092 -16.89296 -16.58669 -16.09498 -15.94570 -15.76201 -15.22032 -15.14212 -14.79660 -14.69368 -14.58252 -14.34542 -14.04583 -13.93240 -13.70543 -13.35825 -13.09193 -13.03239 -12.91869 -12.80763 -12.78401 -12.61510 -12.43308 -12.17077 -12.06461 -11.74176 -11.69156 -11.63824 -11.05669 -10.58918 -10.10724 -9.71146 -9.52949 -8.87102 -8.70675 -8.11592 -6.39987 0.40016 0.52650 0.72554 0.81892 1.40713 1.44814 1.57558 2.03730 2.26013 2.46967 2.67747 2.93958 3.05881 3.39916 3.79993 3.89453 4.04805 4.17903 4.25191 4.32045 4.37064 4.39352 4.43241 4.47548 4.56473 4.59960 4.64345 4.69047 4.80245 4.85565 4.89920 4.93601 5.00285 5.12871 5.17572 5.22812 5.38659 5.40628 5.42822 5.51910 5.71836 5.79664 5.88728 5.89502 5.96316 6.07400 6.27095 6.54767 6.63417 7.01907 7.45449 7.84548 8.67899 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011334 B = 0.004450 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.861297 B = 6290.728009 C = 7033.422922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.340 6.340 3 C 0.119 3.881 4 C -0.207 4.207 5 C -0.086 4.086 6 C -0.130 4.130 7 C -0.104 4.104 8 C -0.091 4.091 9 C -0.111 4.111 10 C -0.060 4.060 11 C 0.488 3.512 12 O -0.581 6.581 13 N -0.402 5.402 14 C -0.378 4.378 15 H 0.095 0.905 16 C 0.023 3.977 17 N -0.877 5.877 18 Si 0.980 3.020 19 H -0.255 1.255 20 H -0.274 1.274 21 H -0.276 1.276 22 C 0.168 3.832 23 C -0.212 4.212 24 C -0.117 4.117 25 C -0.168 4.168 26 C -0.119 4.119 27 C -0.128 4.128 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.274 0.726 40 H 0.146 0.854 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.135 0.865 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.134 6.510 3.756 11.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.254 6.254 3 C 0.074 3.926 4 C -0.225 4.225 5 C -0.103 4.103 6 C -0.131 4.131 7 C -0.160 4.160 8 C -0.109 4.109 9 C -0.112 4.112 10 C -0.099 4.099 11 C 0.282 3.718 12 O -0.466 6.466 13 N -0.110 5.110 14 C -0.505 4.505 15 H 0.112 0.888 16 C -0.184 4.184 17 N -0.509 5.509 18 Si 0.803 3.197 19 H -0.178 1.178 20 H -0.199 1.199 21 H -0.201 1.201 22 C 0.071 3.929 23 C -0.232 4.232 24 C -0.135 4.135 25 C -0.187 4.187 26 C -0.137 4.137 27 C -0.149 4.149 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.139 0.861 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.144 6.686 3.398 11.826 hybrid contribution 0.658 -0.744 0.486 1.106 sum -8.486 5.942 3.884 11.064 Atomic orbital electron populations 1.23285 0.76773 1.05087 1.02181 1.86080 1.23311 1.27398 1.88643 1.18965 0.91607 0.85118 0.96918 1.21446 1.00891 0.91709 1.08448 1.21142 0.93766 0.97719 0.97705 1.20099 0.94273 0.95771 1.02914 1.20732 1.00534 0.92131 1.02621 1.20893 0.99845 0.91154 0.98987 1.18977 0.91255 0.94903 1.06037 1.20062 1.00637 0.95552 0.93660 1.21333 0.79706 0.79121 0.91686 1.90253 1.50512 1.58849 1.46978 1.41312 1.41501 1.24194 1.04041 1.19609 0.91226 1.35774 1.03876 0.88767 1.26359 0.96238 0.97078 0.98744 1.70096 1.05986 1.39268 1.35587 0.85072 0.78627 0.77838 0.78197 1.17833 1.19914 1.20119 1.18542 0.95702 0.93585 0.85037 1.22373 1.05539 1.02422 0.92838 1.21186 0.99205 0.97532 0.95620 1.21162 1.02411 0.95758 0.99387 1.21127 1.00352 1.00365 0.91896 1.20784 1.01114 0.96055 0.96967 0.87219 0.90725 0.92340 0.83034 0.82615 0.91256 0.89499 0.91502 0.86141 0.88746 0.88661 0.91670 0.83740 0.84930 0.83961 0.84724 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.81 113.37 1.11 1.59 16 2 O -0.34 -11.98 9.63 -92.50 -0.89 -12.87 16 3 C 0.12 4.22 6.64 22.50 0.15 4.37 16 4 C -0.21 -5.74 9.04 22.37 0.20 -5.54 16 5 C -0.09 -2.15 9.69 22.26 0.22 -1.93 16 6 C -0.13 -3.65 5.88 -19.85 -0.12 -3.77 16 7 C -0.10 -2.13 10.01 71.24 0.71 -1.41 16 8 C -0.09 -3.16 9.33 22.25 0.21 -2.95 16 9 C -0.11 -4.31 4.40 -19.77 -0.09 -4.40 16 10 C -0.06 -2.59 4.38 29.10 0.13 -2.47 16 11 C 0.49 25.15 7.52 87.66 0.66 25.80 16 12 O -0.58 -31.59 12.55 -3.01 -0.04 -31.62 16 13 N -0.40 -21.63 2.66 -458.90 -1.22 -22.85 16 14 C -0.38 -19.48 7.40 84.02 0.62 -18.86 16 15 H 0.09 4.66 7.78 -2.91 -0.02 4.64 16 16 C 0.02 1.12 3.85 84.91 0.33 1.45 16 17 N -0.88 -47.17 11.62 21.65 0.25 -46.91 16 18 Si 0.98 38.94 29.56 68.60 2.03 40.97 16 19 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 21 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 22 C 0.17 9.00 5.71 38.22 0.22 9.21 16 23 C -0.21 -10.81 8.96 22.41 0.20 -10.61 16 24 C -0.12 -4.96 10.04 22.25 0.22 -4.74 16 25 C -0.17 -6.50 10.04 22.30 0.22 -6.27 16 26 C -0.12 -4.96 10.04 22.25 0.22 -4.73 16 27 C -0.13 -6.36 7.86 22.41 0.18 -6.19 16 28 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 1.32 7.67 -2.39 -0.02 1.30 16 30 H 0.06 1.25 7.65 -2.39 -0.02 1.23 16 31 H 0.15 3.19 6.30 -2.91 -0.02 3.17 16 32 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 35 H 0.07 1.32 8.08 -2.39 -0.02 1.31 16 36 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 37 H 0.09 4.07 7.96 -2.38 -0.02 4.05 16 38 H 0.10 4.03 7.63 -2.39 -0.02 4.01 16 39 H 0.27 13.88 8.32 -92.71 -0.77 13.11 16 40 H 0.15 7.89 4.76 -42.75 -0.20 7.69 16 41 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 42 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 43 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 44 H 0.11 5.55 6.02 -2.91 -0.02 5.54 16 Total: -1.00 -68.87 364.77 6.35 -62.52 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: 0.82 Total: 42.20 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 5.40 Total: -31.44 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -0.97 Total: -69.76 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -0.93 Total: -44.50 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -68.87 6.35 -62.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345171555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.095 kcal (2) G-P(sol) polarization free energy of solvation -68.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds