Wall clock time and date at job start Tue Mar 31 2020 14:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99784 * 2 1 4 4 H 1.48501 * 109.46998 * 270.00045 * 3 2 1 5 5 H 1.48498 * 109.47290 * 30.00506 * 3 2 1 6 6 H 1.48500 * 109.46701 * 150.00135 * 3 2 1 7 7 C 1.37874 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99584 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47278 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47135 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99716 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99902 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99956 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47399 * 180.02562 * 14 13 11 16 16 C 1.38296 * 119.97153 * 89.99562 * 15 14 13 17 17 C 1.38252 * 120.11483 * 180.02562 * 16 15 14 18 18 C 1.38155 * 120.05714 * 359.97438 * 17 16 15 19 19 C 1.38737 * 119.94422 * 0.02562 * 18 17 16 20 20 O 1.35887 * 120.05991 * 179.97438 * 19 18 17 21 21 C 1.35887 * 117.99769 * 90.10019 * 20 19 18 22 22 C 1.38761 * 120.05908 * 0.18394 * 21 20 19 23 23 C 1.38130 * 119.94022 * 179.76919 * 22 21 20 24 24 C 1.38275 * 120.06083 * 0.50734 * 23 22 21 25 25 C 1.38272 * 120.11644 * 359.74613 * 24 23 22 26 26 C 1.38140 * 120.05411 * 359.97438 * 25 24 23 27 27 C 1.38121 * 119.96959 * 270.25671 * 15 14 13 28 28 H 0.97004 * 119.99930 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47276 * 59.99746 * 9 7 2 30 30 H 1.08999 * 109.47076 * 300.00181 * 9 7 2 31 31 H 1.09000 * 109.46929 * 60.00358 * 10 9 7 32 32 H 1.09003 * 109.46857 * 300.00040 * 10 9 7 33 33 H 0.97004 * 120.00116 * 0.02562 * 13 11 10 34 34 H 1.08997 * 109.47492 * 59.99874 * 14 13 11 35 35 H 1.09003 * 109.47244 * 299.99773 * 14 13 11 36 36 H 1.07996 * 119.94237 * 0.02668 * 16 15 14 37 37 H 1.08000 * 119.97157 * 179.97438 * 17 16 15 38 38 H 1.07998 * 120.03083 * 180.02562 * 18 17 16 39 39 H 1.07996 * 120.02417 * 0.02562 * 22 21 20 40 40 H 1.08004 * 119.97226 * 180.25947 * 23 22 21 41 41 H 1.07997 * 119.94260 * 179.72800 * 24 23 22 42 42 H 1.07990 * 119.97691 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.02627 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.03049 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2789 -4.9671 0.0011 13 7 2.1657 -6.1343 0.0018 14 6 1.4332 -7.4030 0.0019 15 6 2.4125 -8.5485 0.0032 16 6 2.8605 -9.0730 1.2019 17 6 3.7593 -10.1235 1.2066 18 6 4.2118 -10.6524 0.0133 19 6 3.7639 -10.1281 -1.1906 20 8 4.2078 -10.6462 -2.3658 21 6 3.5034 -11.6680 -2.9191 22 6 2.3655 -12.1497 -2.2876 23 6 1.6486 -13.1853 -2.8546 24 6 2.0697 -13.7490 -4.0450 25 6 3.2061 -13.2744 -4.6736 26 6 3.9235 -12.2351 -4.1138 27 6 2.8659 -9.0701 -1.1926 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8719 -3.6043 0.8906 32 1 2.8719 -3.6042 -0.8895 33 1 3.1357 -6.1343 0.0022 34 1 0.8069 -7.4611 -0.8883 35 1 0.8062 -7.4605 0.8916 36 1 2.5077 -8.6612 2.1359 37 1 4.1079 -10.5310 2.1441 38 1 4.9135 -11.4733 0.0174 39 1 2.0385 -11.7125 -1.3559 40 1 0.7605 -13.5578 -2.3657 41 1 1.5102 -14.5615 -4.4843 42 1 3.5328 -13.7160 -5.6034 43 1 4.8114 -11.8650 -4.6049 44 1 2.5192 -8.6571 -2.1284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360005288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:10 Heat of formation + Delta-G solvation = -26.241657 kcal Electronic energy + Delta-G solvation = -25194.730711 eV Core-core repulsion = 21463.069884 eV Total energy + Delta-G solvation = -3731.660827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28736 -39.57465 -38.84255 -37.69915 -34.72063 -33.43797 -31.74600 -31.56558 -31.00151 -30.76445 -29.72200 -26.87553 -25.09700 -24.04021 -22.98721 -22.52215 -21.70535 -21.17725 -19.71974 -18.79766 -17.35720 -16.83312 -16.63044 -16.53551 -16.26294 -15.66832 -15.62591 -15.06665 -14.85739 -14.51244 -14.40356 -14.14829 -14.00234 -13.79749 -13.36687 -13.10435 -13.07684 -12.67409 -12.32437 -12.16189 -12.09801 -11.98693 -11.81987 -11.32864 -11.24548 -11.14708 -10.92041 -10.59199 -9.94947 -9.67816 -9.52075 -9.39863 -9.21115 -9.11573 -8.89965 -8.83254 -8.65692 -8.31154 -5.95256 -3.99610 0.65155 0.83621 0.94893 1.02009 2.71661 3.23897 3.24826 3.34115 3.38559 3.40093 3.42768 3.78843 4.31695 4.44647 4.47039 4.48567 4.52755 4.68327 4.75484 4.85909 4.87870 4.98627 5.03476 5.13823 5.33114 5.37121 5.39651 5.53168 5.58307 5.60710 5.81286 5.89446 5.92952 5.95162 6.01704 6.13663 6.15961 6.23693 6.25367 6.27342 6.51138 6.65412 6.90025 7.22397 7.75235 7.86200 7.87064 8.07997 8.39493 8.76063 9.08942 9.63873 11.15659 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.001903 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.802429 B =14710.871007 C =15060.942305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.510 3.490 12 O -0.534 6.534 13 N -0.741 5.741 14 C 0.159 3.841 15 C -0.086 4.086 16 C -0.097 4.097 17 C -0.107 4.107 18 C -0.121 4.121 19 C 0.079 3.921 20 O -0.259 6.259 21 C 0.124 3.876 22 C -0.194 4.194 23 C -0.082 4.082 24 C -0.155 4.155 25 C -0.084 4.084 26 C -0.148 4.148 27 C -0.106 4.106 28 H 0.261 0.739 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.399 0.601 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.130 0.870 43 H 0.132 0.868 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.015 -31.145 -3.233 32.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.299 3.701 12 O -0.409 6.409 13 N -0.396 5.396 14 C 0.035 3.965 15 C -0.087 4.087 16 C -0.115 4.115 17 C -0.125 4.125 18 C -0.140 4.140 19 C 0.037 3.963 20 O -0.171 6.171 21 C 0.081 3.919 22 C -0.212 4.212 23 C -0.100 4.100 24 C -0.174 4.174 25 C -0.102 4.102 26 C -0.166 4.166 27 C -0.125 4.125 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.232 0.768 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.105 -30.918 -3.312 32.134 hybrid contribution 0.869 0.848 0.079 1.217 sum 8.975 -30.071 -3.232 31.547 Atomic orbital electron populations 1.70000 1.06048 1.26568 1.50216 1.25031 0.94838 0.99241 0.95327 0.86585 0.79759 0.83497 0.78061 1.20679 1.21228 1.19899 1.21225 0.92943 0.91014 1.51350 0.92593 1.18903 0.93179 0.89370 0.98633 1.21874 1.00729 0.91793 1.02553 1.21609 0.88657 0.85539 0.74311 1.90676 1.14456 1.87566 1.48215 1.46270 1.10148 1.04939 1.78210 1.20117 0.92352 0.80731 1.03271 1.19881 0.98545 0.97673 0.92595 1.21287 0.96439 0.95749 0.98037 1.21068 0.97238 0.96498 0.97713 1.21410 1.00530 1.00515 0.91526 1.18555 0.97976 0.95562 0.84227 1.84385 1.50471 1.47174 1.35069 1.19227 0.91368 0.88038 0.93285 1.21343 0.96868 1.00813 1.02204 1.20996 0.98829 0.94902 0.95274 1.21124 0.97974 1.01688 0.96569 1.20986 0.94575 0.95234 0.99369 1.20464 1.02530 0.98812 0.94816 1.21358 0.95720 0.96382 0.99056 0.92960 0.95827 0.95794 0.90196 0.90195 0.76754 0.90779 0.90560 0.84946 0.84915 0.85146 0.85358 0.85641 0.85785 0.85192 0.85006 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 10 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 11 C 0.51 9.76 7.83 -10.99 -0.09 9.67 16 12 O -0.53 -12.55 15.98 5.55 0.09 -12.46 16 13 N -0.74 -10.30 5.55 -61.47 -0.34 -10.65 16 14 C 0.16 1.93 5.80 -5.19 -0.03 1.90 16 15 C -0.09 -0.84 5.25 -104.64 -0.55 -1.39 16 16 C -0.10 -0.80 9.70 -39.55 -0.38 -1.19 16 17 C -0.11 -0.79 10.04 -39.61 -0.40 -1.18 16 18 C -0.12 -1.01 9.91 -39.43 -0.39 -1.40 16 19 C 0.08 0.78 3.95 -39.20 -0.15 0.62 16 20 O -0.26 -2.80 9.98 -3.54 -0.04 -2.84 16 21 C 0.12 1.22 6.67 -39.20 -0.26 0.96 16 22 C -0.19 -1.77 9.20 -39.43 -0.36 -2.13 16 23 C -0.08 -0.64 10.04 -39.61 -0.40 -1.03 16 24 C -0.16 -1.09 10.04 -39.55 -0.40 -1.49 16 25 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 26 C -0.15 -1.26 9.99 -39.42 -0.39 -1.66 16 27 C -0.11 -1.07 9.55 -39.43 -0.38 -1.45 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 30 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.40 4.57 8.46 -40.82 -0.35 4.23 16 34 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 35 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.13 1.15 6.68 -52.49 -0.35 0.80 16 40 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 382.45 15.07 5.76 5.76 Total: -1.00 -34.88 382.45 -10.22 -45.10 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.15 Total: 1.58 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -5.27 Total: -16.44 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.40 Total: -37.47 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.05 Total: -15.29 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.88 -10.22 -45.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360005288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.857 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds