Wall clock time and date at job start Tue Mar 31 2020 14:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99784 * 2 1 4 4 H 1.48501 * 109.46998 * 270.00045 * 3 2 1 5 5 H 1.48498 * 109.47290 * 30.00506 * 3 2 1 6 6 H 1.48500 * 109.46701 * 150.00135 * 3 2 1 7 7 C 1.37874 * 120.00056 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99584 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47278 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47135 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99716 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99902 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99956 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47399 * 180.02562 * 14 13 11 16 16 C 1.38296 * 119.97153 * 89.99562 * 15 14 13 17 17 C 1.38252 * 120.11483 * 180.02562 * 16 15 14 18 18 C 1.38155 * 120.05714 * 359.97438 * 17 16 15 19 19 C 1.38737 * 119.94422 * 0.02562 * 18 17 16 20 20 O 1.35887 * 120.05991 * 179.97438 * 19 18 17 21 21 C 1.35887 * 117.99769 * 90.10019 * 20 19 18 22 22 C 1.38761 * 120.05908 * 0.18394 * 21 20 19 23 23 C 1.38130 * 119.94022 * 179.76919 * 22 21 20 24 24 C 1.38275 * 120.06083 * 0.50734 * 23 22 21 25 25 C 1.38272 * 120.11644 * 359.74613 * 24 23 22 26 26 C 1.38140 * 120.05411 * 359.97438 * 25 24 23 27 27 C 1.38121 * 119.96959 * 270.25671 * 15 14 13 28 28 H 0.97004 * 119.99930 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47276 * 59.99746 * 9 7 2 30 30 H 1.08999 * 109.47076 * 300.00181 * 9 7 2 31 31 H 1.09000 * 109.46929 * 60.00358 * 10 9 7 32 32 H 1.09003 * 109.46857 * 300.00040 * 10 9 7 33 33 H 0.97004 * 120.00116 * 0.02562 * 13 11 10 34 34 H 1.08997 * 109.47492 * 59.99874 * 14 13 11 35 35 H 1.09003 * 109.47244 * 299.99773 * 14 13 11 36 36 H 1.07996 * 119.94237 * 0.02668 * 16 15 14 37 37 H 1.08000 * 119.97157 * 179.97438 * 17 16 15 38 38 H 1.07998 * 120.03083 * 180.02562 * 18 17 16 39 39 H 1.07996 * 120.02417 * 0.02562 * 22 21 20 40 40 H 1.08004 * 119.97226 * 180.25947 * 23 22 21 41 41 H 1.07997 * 119.94260 * 179.72800 * 24 23 22 42 42 H 1.07990 * 119.97691 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.02627 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.03049 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2789 -4.9671 0.0011 13 7 2.1657 -6.1343 0.0018 14 6 1.4332 -7.4030 0.0019 15 6 2.4125 -8.5485 0.0032 16 6 2.8605 -9.0730 1.2019 17 6 3.7593 -10.1235 1.2066 18 6 4.2118 -10.6524 0.0133 19 6 3.7639 -10.1281 -1.1906 20 8 4.2078 -10.6462 -2.3658 21 6 3.5034 -11.6680 -2.9191 22 6 2.3655 -12.1497 -2.2876 23 6 1.6486 -13.1853 -2.8546 24 6 2.0697 -13.7490 -4.0450 25 6 3.2061 -13.2744 -4.6736 26 6 3.9235 -12.2351 -4.1138 27 6 2.8659 -9.0701 -1.1926 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.8719 -3.6043 0.8906 32 1 2.8719 -3.6042 -0.8895 33 1 3.1357 -6.1343 0.0022 34 1 0.8069 -7.4611 -0.8883 35 1 0.8062 -7.4605 0.8916 36 1 2.5077 -8.6612 2.1359 37 1 4.1079 -10.5310 2.1441 38 1 4.9135 -11.4733 0.0174 39 1 2.0385 -11.7125 -1.3559 40 1 0.7605 -13.5578 -2.3657 41 1 1.5102 -14.5615 -4.4843 42 1 3.5328 -13.7160 -5.6034 43 1 4.8114 -11.8650 -4.6049 44 1 2.5192 -8.6571 -2.1284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360005288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:09 Heat of formation + Delta-G solvation = -46.815030 kcal Electronic energy + Delta-G solvation = -25195.622840 eV Core-core repulsion = 21463.069884 eV Total energy + Delta-G solvation = -3732.552956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.98009 -40.78763 -39.80589 -38.40924 -35.96595 -35.51675 -33.20151 -32.27828 -32.18130 -31.59876 -30.39060 -28.35326 -26.69024 -24.70088 -23.68288 -23.58315 -23.03451 -22.03765 -21.24389 -19.54558 -18.81339 -18.02290 -17.46495 -17.36078 -17.18471 -16.92779 -16.82762 -16.51557 -16.40004 -15.45779 -15.23740 -15.02708 -14.75292 -14.64557 -14.41685 -14.38251 -14.20009 -14.06770 -13.54155 -13.38545 -13.23093 -12.91914 -12.80681 -12.70133 -12.52329 -12.47292 -11.94806 -11.91875 -11.91487 -11.63857 -11.30796 -10.87880 -10.56997 -10.13857 -10.04379 -9.97325 -9.81196 -9.29551 -8.17880 -6.31874 -0.04564 0.13545 0.35044 0.40697 1.42193 1.44966 1.55893 1.69566 2.01838 2.28040 2.44461 2.78846 2.80505 3.14989 3.49073 3.79762 3.85762 3.93931 3.99260 4.06720 4.16849 4.19237 4.25747 4.35606 4.45912 4.48653 4.51692 4.55540 4.59811 4.66184 4.83012 4.89754 5.04340 5.08069 5.24595 5.28526 5.31108 5.38599 5.42678 5.45302 5.50914 5.56148 5.63591 5.64383 5.85702 5.92672 6.17908 6.53791 6.56604 6.86544 7.31002 7.38342 8.94707 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020451 B = 0.001903 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.802429 B =14710.871007 C =15060.942305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.120 4.120 11 C 0.513 3.487 12 O -0.587 6.587 13 N -0.715 5.715 14 C 0.161 3.839 15 C -0.089 4.089 16 C -0.094 4.094 17 C -0.097 4.097 18 C -0.119 4.119 19 C 0.067 3.933 20 O -0.274 6.274 21 C 0.101 3.899 22 C -0.206 4.206 23 C -0.090 4.090 24 C -0.157 4.157 25 C -0.084 4.084 26 C -0.161 4.161 27 C -0.115 4.115 28 H 0.263 0.737 29 H -0.018 1.018 30 H -0.016 1.016 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.415 0.585 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.164 0.836 38 H 0.144 0.856 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.138 0.862 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.483 -32.569 -2.861 34.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.302 3.698 12 O -0.467 6.467 13 N -0.369 5.369 14 C 0.038 3.962 15 C -0.090 4.090 16 C -0.113 4.113 17 C -0.114 4.114 18 C -0.137 4.137 19 C 0.026 3.974 20 O -0.187 6.187 21 C 0.058 3.942 22 C -0.224 4.224 23 C -0.108 4.108 24 C -0.175 4.175 25 C -0.102 4.102 26 C -0.180 4.180 27 C -0.134 4.134 28 H 0.071 0.929 29 H 0.000 1.000 30 H 0.003 0.997 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.251 0.749 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.165 0.835 37 H 0.181 0.819 38 H 0.162 0.838 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.174 0.826 43 H 0.156 0.844 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.639 -32.394 -2.941 34.223 hybrid contribution 0.092 1.142 -0.070 1.148 sum 10.731 -31.252 -3.011 33.180 Atomic orbital electron populations 1.70178 1.08280 1.27792 1.51467 1.26148 0.95756 1.03968 0.94675 0.85312 0.78668 0.77713 0.78484 1.19785 1.21133 1.17911 1.21719 0.94003 0.91636 1.50760 0.90626 1.18696 0.93723 0.92430 0.94772 1.21645 0.99344 0.90074 1.04868 1.21329 0.87792 0.86602 0.74102 1.90662 1.16597 1.88327 1.51111 1.45970 1.10906 1.04258 1.75759 1.20141 0.92833 0.80473 1.02762 1.19589 0.98778 0.97352 0.93273 1.21478 0.96190 0.95784 0.97818 1.21376 0.96055 0.95489 0.98520 1.21636 1.00306 1.00577 0.91220 1.18703 0.98315 0.95734 0.84697 1.84347 1.51005 1.47728 1.35656 1.19492 0.92069 0.88470 0.94132 1.21405 0.97126 1.01547 1.02364 1.21296 0.99265 0.94513 0.95744 1.21486 0.97927 1.01921 0.96122 1.21346 0.94228 0.94481 1.00096 1.20730 1.03174 0.99425 0.94667 1.21290 0.96371 0.96990 0.98791 0.92861 0.99999 0.99735 0.87598 0.87939 0.74858 0.91938 0.90526 0.83504 0.81876 0.83837 0.85822 0.83944 0.83327 0.82604 0.84407 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.87 13.29 21.45 0.28 -59.59 16 2 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 3 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 8 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 9 C 0.04 2.33 4.26 29.85 0.13 2.46 16 10 C -0.12 -4.83 5.64 29.85 0.17 -4.66 16 11 C 0.51 19.87 7.83 87.66 0.69 20.56 16 12 O -0.59 -28.87 15.98 -3.05 -0.05 -28.92 16 13 N -0.72 -19.42 5.55 -466.79 -2.59 -22.00 16 14 C 0.16 3.89 5.80 85.63 0.50 4.39 16 15 C -0.09 -1.68 5.25 -19.88 -0.10 -1.78 16 16 C -0.09 -1.37 9.70 22.29 0.22 -1.15 16 17 C -0.10 -1.15 10.04 22.25 0.22 -0.93 16 18 C -0.12 -1.77 9.91 22.37 0.22 -1.55 16 19 C 0.07 1.31 3.95 22.52 0.09 1.40 16 20 O -0.27 -6.02 9.98 -35.58 -0.36 -6.38 16 21 C 0.10 2.01 6.67 22.52 0.15 2.16 16 22 C -0.21 -3.73 9.20 22.37 0.21 -3.53 16 23 C -0.09 -1.30 10.04 22.25 0.22 -1.08 16 24 C -0.16 -1.91 10.04 22.29 0.22 -1.68 16 25 C -0.08 -1.05 10.04 22.25 0.22 -0.83 16 26 C -0.16 -2.69 9.99 22.37 0.22 -2.46 16 27 C -0.12 -2.33 9.55 22.37 0.21 -2.12 16 28 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 29 H -0.02 -1.17 8.10 -2.38 -0.02 -1.19 16 30 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 31 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 32 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 33 H 0.41 8.75 8.46 -92.70 -0.78 7.96 16 34 H 0.06 1.68 8.09 -2.39 -0.02 1.66 16 35 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 36 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.12 2.25 6.68 -2.91 -0.02 2.23 16 40 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 42 H 0.16 1.05 8.06 -2.92 -0.02 1.03 16 43 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 44 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -79.38 382.45 3.82 -75.56 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.22 Total: 16.45 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 4.28 Total: -21.77 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -2.30 Total: -81.59 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.40 Total: -35.29 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -79.38 3.82 -75.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360005288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.747 kcal (2) G-P(sol) polarization free energy of solvation -79.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds