Wall clock time and date at job start Tue Mar 31 2020 14:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38231 * 119.99638 * 2 1 4 4 C 1.38237 * 119.99676 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00043 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99966 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46778 * 89.99775 * 6 5 4 8 8 C 1.53007 * 109.47324 * 60.00011 * 7 6 5 9 9 C 1.52994 * 109.47353 * 300.00075 * 7 6 5 10 10 N 1.46504 * 109.47109 * 179.97438 * 7 6 5 11 11 S 1.65592 * 120.00108 * 197.69585 * 10 7 6 12 12 O 1.42107 * 104.27616 * 189.12913 * 11 10 7 13 13 O 1.42099 * 104.28299 * 316.98774 * 11 10 7 14 14 C 1.81400 * 104.45012 * 73.05945 * 11 10 7 15 15 C 1.52996 * 109.47303 * 183.46142 * 14 11 10 16 16 C 1.50703 * 109.47496 * 179.97438 * 15 14 11 17 17 H 1.08006 * 119.99585 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00421 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99733 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99944 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47125 * 59.99839 * 20 18 16 22 22 H 1.48500 * 109.46683 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46969 * 299.99803 * 20 18 16 24 24 C 1.38230 * 120.00180 * 0.24889 * 5 4 3 25 25 C 1.38233 * 120.00094 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46951 * 89.99914 * 1 2 3 27 27 H 1.09000 * 109.47094 * 210.00137 * 1 2 3 28 28 H 1.09005 * 109.47285 * 330.00383 * 1 2 3 29 29 H 1.07995 * 120.00736 * 359.97307 * 3 2 1 30 30 H 1.08003 * 120.00130 * 179.97438 * 4 3 2 31 31 H 1.08995 * 109.47032 * 329.99879 * 6 5 4 32 32 H 1.09003 * 109.47029 * 209.99435 * 6 5 4 33 33 H 1.08995 * 109.46891 * 297.01307 * 8 7 6 34 34 H 1.09004 * 109.46567 * 57.00680 * 8 7 6 35 35 H 1.08993 * 109.47100 * 177.00899 * 8 7 6 36 36 H 1.09000 * 109.47411 * 182.59877 * 9 7 6 37 37 H 1.08999 * 109.47006 * 302.59220 * 9 7 6 38 38 H 1.09003 * 109.47440 * 62.59530 * 9 7 6 39 39 H 0.97001 * 119.99603 * 17.70209 * 10 7 6 40 40 H 1.08997 * 109.47352 * 303.46426 * 14 11 10 41 41 H 1.09002 * 109.46811 * 63.46465 * 14 11 10 42 42 H 1.08998 * 109.47645 * 299.99821 * 15 14 11 43 43 H 1.09002 * 109.46924 * 60.00392 * 15 14 11 44 44 H 0.96998 * 119.99614 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.00433 * 179.73546 * 24 5 4 46 46 H 1.08003 * 119.99815 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0001 0.0005 7 6 6.2886 0.0001 1.4431 8 6 5.7786 -1.2491 2.1644 9 6 5.7786 1.2493 2.1643 10 7 7.7537 -0.0004 1.4432 11 16 8.5814 -0.4364 2.8095 12 8 9.9343 -0.1144 2.5173 13 8 7.8849 0.2137 3.8638 14 6 8.3638 -2.2341 2.9163 15 6 9.0182 -2.7518 4.1987 16 6 8.8368 -4.2452 4.2878 17 1 8.3080 -4.7725 3.5075 18 6 9.3459 -4.9385 5.3654 19 7 9.9893 -4.2964 6.3158 20 14 9.1217 -6.7898 5.4754 21 1 9.7582 -7.4361 4.2998 22 1 9.7557 -7.2920 6.7208 23 1 7.6722 -7.1126 5.4934 24 6 3.5806 -1.1971 -0.0052 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6582 2.1325 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 6.1420 0.8900 -0.5133 32 1 6.1421 -0.8900 -0.5132 33 1 4.6900 -1.2227 2.2110 34 1 6.0976 -2.1383 1.6205 35 1 6.1850 -1.2763 3.1754 36 1 6.1794 1.2730 3.1776 37 1 6.1035 2.1387 1.6243 38 1 4.6896 1.2264 2.2047 39 1 8.2388 0.2547 0.6428 40 1 7.3000 -2.4712 2.9300 41 1 8.8307 -2.7085 2.0531 42 1 10.0820 -2.5149 4.1851 43 1 8.5513 -2.2774 5.0619 44 1 10.3471 -4.7841 7.0741 45 1 4.1206 -2.1324 -0.0095 46 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416672930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:08 Heat of formation + Delta-G solvation = -65.704373 kcal Electronic energy + Delta-G solvation = -26016.607405 eV Core-core repulsion = 22418.679298 eV Total energy + Delta-G solvation = -3597.928108 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.06751 -37.87034 -36.43157 -35.38259 -33.93344 -33.53037 -31.33016 -31.13448 -30.46701 -28.61915 -27.47188 -25.53262 -25.22483 -22.80436 -21.75321 -21.17109 -19.96719 -18.78157 -17.46083 -16.65966 -16.34484 -15.98913 -15.70521 -15.34970 -15.23611 -14.74495 -14.56622 -14.18252 -13.95758 -13.71067 -13.59621 -13.51552 -12.99363 -12.63274 -12.57409 -12.46225 -12.18610 -12.07957 -11.79660 -11.69993 -11.61034 -11.51602 -11.42987 -11.32559 -11.14737 -11.05088 -11.02794 -10.86393 -10.55854 -10.38154 -10.14641 -9.80204 -9.46464 -9.06452 -9.00008 -8.61176 -8.48734 -6.11222 -4.16725 0.83986 1.15375 1.24330 3.15036 3.27353 3.32281 3.33940 3.56240 4.29691 4.39754 4.55468 4.56772 4.67018 4.71249 4.79029 4.83064 4.85067 5.04709 5.10416 5.23877 5.29743 5.30412 5.33439 5.43264 5.52418 5.60709 5.61657 5.66788 5.68147 5.80188 5.86486 5.90981 5.96394 5.98302 6.10371 6.24429 6.33328 6.41975 6.47664 6.54238 6.57284 6.84209 7.17282 7.32467 7.39014 7.81591 8.19368 8.86486 9.47845 10.99833 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.003302 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.058905 B = 8477.131186 C = 9938.819064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.122 4.122 4 C -0.109 4.109 5 C -0.078 4.078 6 C -0.080 4.080 7 C 0.191 3.809 8 C -0.200 4.200 9 C -0.178 4.178 10 N -1.121 6.121 11 S 2.593 3.407 12 O -0.973 6.973 13 O -0.963 6.963 14 C -0.609 4.609 15 C 0.030 3.970 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.275 1.275 24 C -0.109 4.109 25 C -0.120 4.120 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.411 0.589 40 H 0.134 0.866 41 H 0.119 0.881 42 H 0.030 0.970 43 H 0.034 0.966 44 H 0.265 0.735 45 H 0.124 0.876 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.480 9.761 -15.642 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.127 4.127 5 C -0.079 4.079 6 C -0.119 4.119 7 C 0.103 3.897 8 C -0.258 4.258 9 C -0.237 4.237 10 N -0.876 5.876 11 S 2.691 3.309 12 O -0.963 6.963 13 O -0.953 6.953 14 C -0.742 4.742 15 C -0.009 4.009 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.127 4.127 25 C -0.138 4.138 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.244 0.756 40 H 0.152 0.848 41 H 0.137 0.863 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.142 0.858 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.006 10.335 -14.737 24.087 hybrid contribution -0.087 -1.514 -0.536 1.608 sum -16.093 8.821 -15.273 23.875 Atomic orbital electron populations 1.20789 0.91428 1.02757 1.02131 1.19914 0.95974 0.93304 1.00049 1.20998 0.94171 0.97438 1.01345 1.21061 0.94050 0.97661 0.99893 1.19680 0.94958 0.93242 1.00006 1.20885 0.91407 1.03683 0.95918 1.19880 0.78802 0.95988 0.95056 1.22956 1.04078 0.97156 1.01582 1.22594 1.01575 0.96390 1.03103 1.55953 1.14283 1.85212 1.32177 1.05544 0.73148 0.79061 0.73134 1.93540 1.34937 1.84072 1.83764 1.93506 1.73906 1.72939 1.54919 1.31005 1.11745 1.21105 1.10331 1.18933 0.95876 0.98199 0.87932 1.20966 1.36779 0.91243 1.06935 0.92130 1.25064 0.94950 0.98894 0.95560 1.69945 1.36429 1.36176 1.10320 0.86545 0.78460 0.84842 0.77512 1.20099 1.21089 1.20080 1.21115 0.94121 0.97781 0.99696 1.21030 0.94202 0.97511 1.01055 0.91370 0.91571 0.91647 0.86287 0.86011 0.90306 0.90049 0.89716 0.90592 0.90423 0.89124 0.92593 0.91569 0.75640 0.84793 0.86293 0.95176 0.94773 0.92493 0.85765 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.09 -0.80 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 4 C -0.11 -0.98 7.95 -39.58 -0.31 -1.29 16 5 C -0.08 -0.73 4.00 -104.62 -0.42 -1.15 16 6 C -0.08 -0.73 4.61 -27.88 -0.13 -0.86 16 7 C 0.19 2.24 0.85 -131.82 -0.11 2.13 16 8 C -0.20 -2.50 6.01 37.16 0.22 -2.28 16 9 C -0.18 -2.19 7.92 37.15 0.29 -1.90 16 10 N -1.12 -14.46 5.41 0.54 0.00 -14.46 16 11 S 2.59 46.68 4.96 -107.50 -0.53 46.15 16 12 O -0.97 -20.53 18.08 -57.54 -1.04 -21.57 16 13 O -0.96 -19.56 14.46 -57.54 -0.83 -20.39 16 14 C -0.61 -11.64 5.28 37.16 0.20 -11.44 16 15 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 16 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 20 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 C -0.11 -1.02 7.98 -39.58 -0.32 -1.33 16 25 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 28 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 30 H 0.12 0.94 8.03 -52.48 -0.42 0.52 16 31 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.08 0.96 6.40 -51.93 -0.33 0.63 16 34 H 0.08 0.85 7.17 -51.93 -0.37 0.48 16 35 H 0.08 1.15 4.94 -51.93 -0.26 0.89 16 36 H 0.09 1.37 5.85 -51.93 -0.30 1.07 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.74 6.36 -51.93 -0.33 0.41 16 39 H 0.41 4.31 8.64 -34.47 -0.30 4.02 16 40 H 0.13 2.29 4.20 -51.93 -0.22 2.07 16 41 H 0.12 2.06 8.14 -51.92 -0.42 1.63 16 42 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.12 1.04 8.04 -52.49 -0.42 0.62 16 46 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -34.49 371.36 -10.37 -44.87 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.13 Total: 4.75 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: -2.15 Total: -35.28 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 0.74 Total: -40.27 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.87 Total: -41.96 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 46.68 SS G_CDS: -0.53 Total: 46.15 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.49 -10.37 -44.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416672930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.839 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds