Wall clock time and date at job start Tue Mar 31 2020 14:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38231 * 119.99638 * 2 1 4 4 C 1.38237 * 119.99676 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00043 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99966 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46778 * 89.99775 * 6 5 4 8 8 C 1.53007 * 109.47324 * 60.00011 * 7 6 5 9 9 C 1.52994 * 109.47353 * 300.00075 * 7 6 5 10 10 N 1.46504 * 109.47109 * 179.97438 * 7 6 5 11 11 S 1.65592 * 120.00108 * 197.69585 * 10 7 6 12 12 O 1.42107 * 104.27616 * 189.12913 * 11 10 7 13 13 O 1.42099 * 104.28299 * 316.98774 * 11 10 7 14 14 C 1.81400 * 104.45012 * 73.05945 * 11 10 7 15 15 C 1.52996 * 109.47303 * 183.46142 * 14 11 10 16 16 C 1.50703 * 109.47496 * 179.97438 * 15 14 11 17 17 H 1.08006 * 119.99585 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00421 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99733 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99944 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47125 * 59.99839 * 20 18 16 22 22 H 1.48500 * 109.46683 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46969 * 299.99803 * 20 18 16 24 24 C 1.38230 * 120.00180 * 0.24889 * 5 4 3 25 25 C 1.38233 * 120.00094 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46951 * 89.99914 * 1 2 3 27 27 H 1.09000 * 109.47094 * 210.00137 * 1 2 3 28 28 H 1.09005 * 109.47285 * 330.00383 * 1 2 3 29 29 H 1.07995 * 120.00736 * 359.97307 * 3 2 1 30 30 H 1.08003 * 120.00130 * 179.97438 * 4 3 2 31 31 H 1.08995 * 109.47032 * 329.99879 * 6 5 4 32 32 H 1.09003 * 109.47029 * 209.99435 * 6 5 4 33 33 H 1.08995 * 109.46891 * 297.01307 * 8 7 6 34 34 H 1.09004 * 109.46567 * 57.00680 * 8 7 6 35 35 H 1.08993 * 109.47100 * 177.00899 * 8 7 6 36 36 H 1.09000 * 109.47411 * 182.59877 * 9 7 6 37 37 H 1.08999 * 109.47006 * 302.59220 * 9 7 6 38 38 H 1.09003 * 109.47440 * 62.59530 * 9 7 6 39 39 H 0.97001 * 119.99603 * 17.70209 * 10 7 6 40 40 H 1.08997 * 109.47352 * 303.46426 * 14 11 10 41 41 H 1.09002 * 109.46811 * 63.46465 * 14 11 10 42 42 H 1.08998 * 109.47645 * 299.99821 * 15 14 11 43 43 H 1.09002 * 109.46924 * 60.00392 * 15 14 11 44 44 H 0.96998 * 119.99614 * 179.97438 * 19 18 16 45 45 H 1.08002 * 120.00433 * 179.73546 * 24 5 4 46 46 H 1.08003 * 119.99815 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0001 0.0005 7 6 6.2886 0.0001 1.4431 8 6 5.7786 -1.2491 2.1644 9 6 5.7786 1.2493 2.1643 10 7 7.7537 -0.0004 1.4432 11 16 8.5814 -0.4364 2.8095 12 8 9.9343 -0.1144 2.5173 13 8 7.8849 0.2137 3.8638 14 6 8.3638 -2.2341 2.9163 15 6 9.0182 -2.7518 4.1987 16 6 8.8368 -4.2452 4.2878 17 1 8.3080 -4.7725 3.5075 18 6 9.3459 -4.9385 5.3654 19 7 9.9893 -4.2964 6.3158 20 14 9.1217 -6.7898 5.4754 21 1 9.7582 -7.4361 4.2998 22 1 9.7557 -7.2920 6.7208 23 1 7.6722 -7.1126 5.4934 24 6 3.5806 -1.1971 -0.0052 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6582 2.1325 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 6.1420 0.8900 -0.5133 32 1 6.1421 -0.8900 -0.5132 33 1 4.6900 -1.2227 2.2110 34 1 6.0976 -2.1383 1.6205 35 1 6.1850 -1.2763 3.1754 36 1 6.1794 1.2730 3.1776 37 1 6.1035 2.1387 1.6243 38 1 4.6896 1.2264 2.2047 39 1 8.2388 0.2547 0.6428 40 1 7.3000 -2.4712 2.9300 41 1 8.8307 -2.7085 2.0531 42 1 10.0820 -2.5149 4.1851 43 1 8.5513 -2.2774 5.0619 44 1 10.3471 -4.7841 7.0741 45 1 4.1206 -2.1324 -0.0095 46 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416672930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:08 Heat of formation + Delta-G solvation = -88.237364 kcal Electronic energy + Delta-G solvation = -26017.584509 eV Core-core repulsion = 22418.679298 eV Total energy + Delta-G solvation = -3598.905211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77949 -38.83867 -37.91885 -36.95933 -35.92050 -34.26990 -33.23513 -31.78936 -31.44311 -29.40354 -28.59860 -27.26975 -26.01746 -23.59062 -23.37042 -22.05854 -20.89153 -20.16475 -19.00490 -18.37696 -17.55608 -16.99268 -16.75993 -16.52630 -16.36058 -16.11971 -15.83254 -15.22090 -15.07047 -14.71343 -14.48829 -14.39214 -14.21818 -13.94174 -13.74308 -13.41830 -13.37904 -13.20484 -13.14428 -13.03783 -12.91230 -12.84050 -12.66255 -12.51059 -12.46243 -12.31897 -12.16252 -11.92572 -11.82346 -11.76233 -11.66642 -11.43627 -11.13151 -10.62633 -10.40890 -9.69892 -9.26476 -8.25054 -6.39085 -0.63695 0.49424 0.60166 1.40826 1.44435 1.52488 1.86135 2.38566 2.84085 2.92184 3.08271 3.26840 3.70740 3.83016 3.90640 4.03933 4.07946 4.11826 4.17627 4.22532 4.28134 4.39678 4.48895 4.64653 4.69018 4.77191 4.77822 4.84256 4.87662 4.95632 4.98965 5.00136 5.09975 5.12631 5.27273 5.29712 5.30567 5.37577 5.38806 5.52908 5.61982 5.69429 5.80621 5.82174 6.07557 6.19578 6.25034 6.74531 7.31019 8.87162 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.003302 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.058905 B = 8477.131186 C = 9938.819064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.132 4.132 4 C -0.116 4.116 5 C -0.088 4.088 6 C -0.072 4.072 7 C 0.189 3.811 8 C -0.208 4.208 9 C -0.179 4.179 10 N -1.099 6.099 11 S 2.616 3.384 12 O -1.005 7.005 13 O -0.988 6.988 14 C -0.608 4.608 15 C 0.023 3.977 16 C -0.538 4.538 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.262 1.262 24 C -0.119 4.119 25 C -0.133 4.133 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.426 0.574 40 H 0.156 0.844 41 H 0.140 0.860 42 H 0.001 0.999 43 H 0.006 0.994 44 H 0.267 0.733 45 H 0.132 0.868 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.232 9.077 -17.911 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.101 4.101 3 C -0.150 4.150 4 C -0.134 4.134 5 C -0.089 4.089 6 C -0.111 4.111 7 C 0.102 3.898 8 C -0.265 4.265 9 C -0.238 4.238 10 N -0.860 5.860 11 S 2.713 3.287 12 O -0.996 6.996 13 O -0.978 6.978 14 C -0.739 4.739 15 C -0.015 4.015 16 C -0.577 4.577 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.186 1.186 24 C -0.137 4.137 25 C -0.151 4.151 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.263 0.737 40 H 0.174 0.826 41 H 0.159 0.841 42 H 0.019 0.981 43 H 0.025 0.975 44 H 0.076 0.924 45 H 0.149 0.851 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.756 9.648 -17.025 26.424 hybrid contribution 0.368 -1.215 0.137 1.277 sum -17.388 8.433 -16.889 25.665 Atomic orbital electron populations 1.20825 0.90092 1.03295 1.02840 1.20231 0.97175 0.93293 0.99432 1.21260 0.94358 0.98169 1.01190 1.21272 0.94404 0.98066 0.99643 1.19724 0.94948 0.93471 1.00761 1.20836 0.91319 1.05223 0.93723 1.20045 0.77412 0.95383 0.97004 1.23025 1.04932 0.98285 1.00303 1.22587 1.02240 0.97429 1.01517 1.55449 1.14922 1.84335 1.31253 1.04570 0.72346 0.78175 0.73603 1.93491 1.37273 1.84297 1.84507 1.93482 1.74241 1.73158 1.56956 1.30956 1.12669 1.22585 1.07709 1.18778 0.94467 0.97978 0.90312 1.21494 1.36473 0.92372 1.07331 0.90506 1.26126 0.94504 1.04494 0.95152 1.70102 1.37801 1.38423 1.11170 0.85378 0.79065 0.78165 0.77738 1.18751 1.21079 1.18636 1.21296 0.94463 0.98176 0.99744 1.21266 0.94400 0.98234 1.01222 0.90508 0.91190 0.90995 0.84870 0.84946 0.88696 0.88716 0.88538 0.89056 0.93103 0.92268 0.91095 0.90461 0.73725 0.82644 0.84139 0.98109 0.97538 0.92436 0.85054 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.24 0.71 -0.52 16 2 C -0.10 -1.56 5.88 -19.87 -0.12 -1.67 16 3 C -0.13 -2.00 9.70 22.27 0.22 -1.79 16 4 C -0.12 -1.81 7.95 22.27 0.18 -1.63 16 5 C -0.09 -1.44 4.00 -19.87 -0.08 -1.52 16 6 C -0.07 -1.10 4.61 29.85 0.14 -0.96 16 7 C 0.19 4.06 0.85 3.60 0.00 4.07 16 8 C -0.21 -4.88 6.01 71.98 0.43 -4.44 16 9 C -0.18 -4.17 7.92 71.98 0.57 -3.60 16 10 N -1.10 -26.51 5.41 -152.20 -0.82 -27.33 16 11 S 2.62 94.58 4.96 -56.49 -0.28 94.30 16 12 O -1.01 -42.84 18.08 -127.65 -2.31 -45.15 16 13 O -0.99 -41.24 14.46 -127.65 -1.85 -43.09 16 14 C -0.61 -23.13 5.28 71.98 0.38 -22.75 16 15 C 0.02 1.24 4.98 29.85 0.15 1.39 16 16 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 17 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 18 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 19 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 20 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 21 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 24 C -0.12 -1.96 7.98 22.27 0.18 -1.78 16 25 C -0.13 -2.14 9.70 22.27 0.22 -1.92 16 26 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 28 H 0.07 0.68 8.09 -2.38 -0.02 0.66 16 29 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.13 1.70 8.03 -2.91 -0.02 1.68 16 31 H 0.09 1.17 8.09 -2.39 -0.02 1.15 16 32 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 33 H 0.10 2.03 6.40 -2.39 -0.02 2.01 16 34 H 0.09 1.82 7.17 -2.38 -0.02 1.81 16 35 H 0.05 1.48 4.94 -2.39 -0.01 1.47 16 36 H 0.06 1.79 5.85 -2.39 -0.01 1.77 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.61 6.36 -2.39 -0.02 1.59 16 39 H 0.43 7.89 8.64 -96.75 -0.84 7.05 16 40 H 0.16 5.20 4.20 -2.39 -0.01 5.19 16 41 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 42 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.13 1.88 8.04 -2.91 -0.02 1.86 16 46 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -76.11 371.36 0.86 -75.25 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.14 Total: 24.33 kcal Atomic # 6 Polarization: -70.18 SS G_CDS: 3.67 Total: -66.51 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -0.54 Total: -84.40 kcal Atomic # 8 Polarization: -84.08 SS G_CDS: -4.15 Total: -88.24 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 94.58 SS G_CDS: -0.28 Total: 94.30 kcal Total: -76.11 0.86 -75.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416672930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.988 kcal (2) G-P(sol) polarization free energy of solvation -76.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds