Wall clock time and date at job start Tue Mar 31 2020 14:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35893 * 117.00051 * 2 1 4 4 C 1.38620 * 120.02320 * 359.97438 * 3 2 1 5 5 C 1.38769 * 119.87756 * 179.97438 * 4 3 2 6 6 N 1.39841 * 120.04449 * 180.02562 * 5 4 3 7 7 C 1.34768 * 120.00302 * 24.77252 * 6 5 4 8 8 O 1.21557 * 120.00214 * 5.84300 * 7 6 5 9 9 C 1.47854 * 120.00276 * 185.83983 * 7 6 5 10 10 C 1.39930 * 120.02544 * 359.72716 * 9 7 6 11 11 C 1.38331 * 120.35757 * 179.76154 * 10 9 7 12 12 C 1.37754 * 120.41234 * 0.51714 * 11 10 9 13 13 C 1.40748 * 120.04204 * 359.73846 * 12 11 10 14 14 C 1.41437 * 120.17819 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99669 * 334.35493 * 14 13 12 16 16 C 1.39935 * 120.00363 * 154.35711 * 14 13 12 17 17 N 1.30836 * 119.99748 * 354.32749 * 16 14 13 18 18 Si 1.86799 * 120.00171 * 174.32752 * 16 14 13 19 19 H 1.48500 * 109.47121 * 90.00195 * 18 16 14 20 20 H 1.48503 * 109.47100 * 210.00160 * 18 16 14 21 21 H 1.48497 * 109.47211 * 329.99910 * 18 16 14 22 22 C 1.39011 * 120.02867 * 180.02562 * 9 7 6 23 23 C 1.38952 * 119.91068 * 359.97438 * 5 4 3 24 24 C 1.50703 * 119.98426 * 180.02562 * 23 5 4 25 25 C 1.38121 * 120.03741 * 359.97438 * 23 5 4 26 26 C 1.38215 * 120.12717 * 0.28099 * 25 23 5 27 27 C 1.50700 * 119.95902 * 179.72344 * 26 25 23 28 28 H 1.09005 * 109.47140 * 60.00073 * 1 2 3 29 29 H 1.09002 * 109.47725 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47260 * 300.00264 * 1 2 3 31 31 H 1.08001 * 120.06163 * 359.95463 * 4 3 2 32 32 H 0.97004 * 119.99508 * 204.77227 * 6 5 4 33 33 H 1.08006 * 119.82227 * 0.02562 * 10 9 7 34 34 H 1.08004 * 119.79186 * 180.25607 * 11 10 9 35 35 H 1.07995 * 119.97777 * 179.76615 * 12 11 10 36 36 H 0.96998 * 119.99583 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.20182 * 359.95441 * 22 9 7 38 38 H 1.08996 * 109.46992 * 269.98124 * 24 23 5 39 39 H 1.09006 * 109.46779 * 29.97863 * 24 23 5 40 40 H 1.08994 * 109.47178 * 149.97769 * 24 23 5 41 41 H 1.07996 * 119.93667 * 179.97438 * 25 23 5 42 42 H 1.08997 * 109.47193 * 89.99097 * 27 26 25 43 43 H 1.08996 * 109.46896 * 209.99941 * 27 26 25 44 44 H 1.09001 * 109.46322 * 329.99698 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3737 -0.0005 5 6 1.9246 3.6085 0.0000 6 7 1.1669 4.7839 0.0000 7 6 -0.0891 4.7759 0.4886 8 8 -0.5261 3.7768 1.0254 9 6 -0.9355 5.9826 0.3716 10 6 -0.4310 7.1350 -0.2411 11 6 -1.2185 8.2662 -0.3586 12 6 -2.5044 8.2750 0.1355 13 6 -3.0273 7.1271 0.7597 14 6 -4.3474 7.1328 1.2675 15 1 -4.8086 8.0639 1.5620 16 6 -5.0558 5.9321 1.3885 17 7 -4.5412 4.8199 0.9300 18 14 -6.7361 5.9171 2.2045 19 1 -7.7862 6.1449 1.1795 20 1 -6.9579 4.6014 2.8566 21 1 -6.7998 6.9928 3.2261 22 6 -2.2309 5.9752 0.8759 23 6 3.3125 3.6755 0.0016 24 6 4.0019 5.0157 0.0028 25 6 4.0608 2.5146 0.0032 26 6 3.4318 1.2838 -0.0026 27 6 4.2519 0.0196 -0.0072 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2129 2.3188 -0.0017 32 1 1.5454 5.6049 -0.3517 33 1 0.5773 7.1400 -0.6282 34 1 -0.8213 9.1493 -0.8369 35 1 -3.1118 9.1632 0.0433 36 1 -5.0325 3.9877 1.0135 37 1 -2.6230 5.0894 1.3532 38 1 4.1695 5.3389 -1.0246 39 1 3.3758 5.7458 0.5158 40 1 4.9586 4.9317 0.5180 41 1 5.1394 2.5686 0.0041 42 1 4.4488 -0.2895 1.0194 43 1 3.7035 -0.7674 -0.5249 44 1 5.1968 0.2014 -0.5194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000478575226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:54 Heat of formation + Delta-G solvation = -35.285240 kcal Electronic energy + Delta-G solvation = -26842.501492 eV Core-core repulsion = 23110.448505 eV Total energy + Delta-G solvation = -3732.052986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65880 -39.26120 -37.71237 -36.99666 -34.67632 -33.81204 -32.23339 -31.35638 -30.00204 -29.48329 -27.76746 -26.84447 -25.79721 -25.21993 -22.99503 -21.93883 -21.07033 -20.43094 -19.65309 -18.37083 -17.73658 -16.43803 -16.07355 -15.67231 -15.46732 -15.17952 -14.93405 -14.72313 -14.34263 -14.09146 -13.74754 -13.58974 -13.42551 -13.23074 -13.12923 -12.75903 -12.68303 -12.55803 -12.03327 -11.88798 -11.75851 -11.70705 -11.32631 -11.22328 -11.15993 -11.03870 -10.93529 -10.81166 -10.54461 -10.03520 -9.85319 -9.80645 -9.38151 -9.10910 -8.21257 -7.80648 -7.57510 -7.49560 -6.77308 -4.53634 1.38878 1.54125 2.11678 2.74268 3.02864 3.05841 3.08206 3.37223 3.48400 3.59009 3.85834 3.96861 4.58281 4.83713 5.04158 5.07584 5.17755 5.31487 5.38482 5.41739 5.44366 5.50507 5.58666 5.61827 5.71115 5.72304 5.77558 5.90180 5.94646 5.98353 6.14503 6.17011 6.31364 6.55470 6.58394 6.63639 6.68606 6.88879 6.90974 7.05673 7.16413 7.28233 7.52632 7.58749 7.63040 7.82425 7.93771 8.09724 8.43018 8.65753 8.74516 8.75512 10.10319 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.003424 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.952537 B = 8176.274958 C = 9887.669787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.142 3.858 4 C -0.218 4.218 5 C 0.199 3.801 6 N -0.673 5.673 7 C 0.564 3.436 8 O -0.521 6.521 9 C -0.135 4.135 10 C -0.214 4.214 11 C -0.100 4.100 12 C -0.205 4.205 13 C 0.092 3.908 14 C -0.452 4.452 15 H 0.080 0.920 16 C 0.067 3.933 17 N -0.793 5.793 18 Si 0.917 3.083 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.261 1.261 22 C -0.087 4.087 23 C -0.161 4.161 24 C -0.108 4.108 25 C -0.063 4.063 26 C -0.147 4.147 27 C -0.096 4.096 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.157 0.843 32 H 0.411 0.589 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.283 0.717 37 H 0.151 0.849 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.128 0.872 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.792 -5.123 -2.724 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.096 3.904 4 C -0.239 4.239 5 C 0.102 3.898 6 N -0.317 5.317 7 C 0.357 3.643 8 O -0.398 6.398 9 C -0.139 4.139 10 C -0.234 4.234 11 C -0.118 4.118 12 C -0.225 4.225 13 C 0.089 3.911 14 C -0.482 4.482 15 H 0.099 0.901 16 C -0.150 4.150 17 N -0.419 5.419 18 Si 0.742 3.258 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.185 1.185 22 C -0.107 4.107 23 C -0.164 4.164 24 C -0.165 4.165 25 C -0.082 4.082 26 C -0.148 4.148 27 C -0.153 4.153 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.174 0.826 32 H 0.249 0.751 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.168 0.832 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.146 0.854 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.399 -6.227 -2.365 14.075 hybrid contribution -0.859 0.609 0.032 1.053 sum 11.540 -5.618 -2.333 13.046 Atomic orbital electron populations 1.23073 0.78033 1.03419 1.02356 1.85990 1.21597 1.26699 1.88669 1.18637 0.91395 0.84094 0.96305 1.21543 1.02355 0.90392 1.09601 1.17385 0.89643 0.86208 0.96544 1.43715 1.14982 1.10912 1.62126 1.19048 0.80165 0.89024 0.76088 1.90651 1.72475 1.34713 1.41960 1.19428 0.95708 0.92142 1.06574 1.20372 0.98737 0.94299 1.10004 1.20435 0.94683 0.96429 1.00261 1.21174 0.96149 0.99650 1.05531 1.17657 0.92929 0.90773 0.89700 1.19631 0.97638 0.94138 1.36769 0.90136 1.25995 1.00544 0.94959 0.93508 1.69706 1.37734 1.00019 1.34433 0.86154 0.80996 0.78764 0.79921 1.19401 1.20003 1.18489 1.22061 0.89752 1.00792 0.98077 1.19465 0.91345 0.96209 1.09414 1.20633 1.00261 0.93605 1.01956 1.20421 0.99003 0.90038 0.98730 1.19102 0.90500 0.95949 1.09295 1.20501 0.98370 0.94658 1.01786 0.92664 0.88521 0.91870 0.82554 0.75113 0.89283 0.88696 0.88449 0.90529 0.83154 0.91549 0.91861 0.91392 0.85425 0.91952 0.91539 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.34 16 2 O -0.32 -4.74 9.54 -19.40 -0.19 -4.93 16 3 C 0.14 2.26 6.66 -39.24 -0.26 2.00 16 4 C -0.22 -3.87 7.70 -39.24 -0.30 -4.17 16 5 C 0.20 3.34 6.41 -83.74 -0.54 2.81 16 6 N -0.67 -11.65 4.91 -10.73 -0.05 -11.70 16 7 C 0.56 12.09 7.57 -12.33 -0.09 12.00 16 8 O -0.52 -12.46 13.50 5.32 0.07 -12.39 16 9 C -0.14 -3.09 5.87 -105.04 -0.62 -3.71 16 10 C -0.21 -4.34 9.54 -38.91 -0.37 -4.71 16 11 C -0.10 -2.05 10.01 -39.72 -0.40 -2.45 16 12 C -0.21 -4.70 9.78 -38.81 -0.38 -5.08 16 13 C 0.09 2.36 5.61 -106.87 -0.60 1.76 16 14 C -0.45 -11.55 9.09 -37.73 -0.34 -11.89 16 15 H 0.08 1.95 7.85 -52.49 -0.41 1.53 16 16 C 0.07 1.65 5.36 -17.34 -0.09 1.56 16 17 N -0.79 -20.35 10.39 55.55 0.58 -19.77 16 18 Si 0.92 18.36 29.56 -169.99 -5.03 13.33 16 19 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 C -0.09 -2.24 8.26 -38.44 -0.32 -2.56 16 23 C -0.16 -2.23 5.90 -104.40 -0.62 -2.84 16 24 C -0.11 -1.15 9.45 36.01 0.34 -0.81 16 25 C -0.06 -0.80 9.34 -39.63 -0.37 -1.17 16 26 C -0.15 -2.03 5.90 -104.43 -0.62 -2.64 16 27 C -0.10 -1.05 9.78 36.01 0.35 -0.70 16 28 H 0.05 0.73 7.66 -51.93 -0.40 0.33 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.91 7.66 -51.93 -0.40 0.52 16 31 H 0.16 3.08 4.03 -52.49 -0.21 2.86 16 32 H 0.41 6.03 5.43 -40.82 -0.22 5.80 16 33 H 0.09 1.48 6.40 -52.48 -0.34 1.14 16 34 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 36 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 37 H 0.15 4.20 5.35 -52.49 -0.28 3.92 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.70 6.98 -51.93 -0.36 0.33 16 40 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 41 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.74 7.53 -51.93 -0.39 0.35 16 44 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 LS Contribution 363.20 15.07 5.47 5.47 Total: -1.00 -28.96 363.20 -8.89 -37.85 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.52 Total: 13.39 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -4.23 Total: -21.26 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.52 Total: -31.47 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.11 Total: -17.32 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.96 -8.89 -37.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000478575226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.567 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds