Wall clock time and date at job start Tue Mar 31 2020 14:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35893 * 117.00051 * 2 1 4 4 C 1.38620 * 120.02320 * 359.97438 * 3 2 1 5 5 C 1.38769 * 119.87756 * 179.97438 * 4 3 2 6 6 N 1.39841 * 120.04449 * 180.02562 * 5 4 3 7 7 C 1.34768 * 120.00302 * 24.77252 * 6 5 4 8 8 O 1.21557 * 120.00214 * 5.84300 * 7 6 5 9 9 C 1.47854 * 120.00276 * 185.83983 * 7 6 5 10 10 C 1.39930 * 120.02544 * 359.72716 * 9 7 6 11 11 C 1.38331 * 120.35757 * 179.76154 * 10 9 7 12 12 C 1.37754 * 120.41234 * 0.51714 * 11 10 9 13 13 C 1.40748 * 120.04204 * 359.73846 * 12 11 10 14 14 C 1.41437 * 120.17819 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99669 * 334.35493 * 14 13 12 16 16 C 1.39935 * 120.00363 * 154.35711 * 14 13 12 17 17 N 1.30836 * 119.99748 * 354.32749 * 16 14 13 18 18 Si 1.86799 * 120.00171 * 174.32752 * 16 14 13 19 19 H 1.48500 * 109.47121 * 90.00195 * 18 16 14 20 20 H 1.48503 * 109.47100 * 210.00160 * 18 16 14 21 21 H 1.48497 * 109.47211 * 329.99910 * 18 16 14 22 22 C 1.39011 * 120.02867 * 180.02562 * 9 7 6 23 23 C 1.38952 * 119.91068 * 359.97438 * 5 4 3 24 24 C 1.50703 * 119.98426 * 180.02562 * 23 5 4 25 25 C 1.38121 * 120.03741 * 359.97438 * 23 5 4 26 26 C 1.38215 * 120.12717 * 0.28099 * 25 23 5 27 27 C 1.50700 * 119.95902 * 179.72344 * 26 25 23 28 28 H 1.09005 * 109.47140 * 60.00073 * 1 2 3 29 29 H 1.09002 * 109.47725 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47260 * 300.00264 * 1 2 3 31 31 H 1.08001 * 120.06163 * 359.95463 * 4 3 2 32 32 H 0.97004 * 119.99508 * 204.77227 * 6 5 4 33 33 H 1.08006 * 119.82227 * 0.02562 * 10 9 7 34 34 H 1.08004 * 119.79186 * 180.25607 * 11 10 9 35 35 H 1.07995 * 119.97777 * 179.76615 * 12 11 10 36 36 H 0.96998 * 119.99583 * 180.02562 * 17 16 14 37 37 H 1.07999 * 120.20182 * 359.95441 * 22 9 7 38 38 H 1.08996 * 109.46992 * 269.98124 * 24 23 5 39 39 H 1.09006 * 109.46779 * 29.97863 * 24 23 5 40 40 H 1.08994 * 109.47178 * 149.97769 * 24 23 5 41 41 H 1.07996 * 119.93667 * 179.97438 * 25 23 5 42 42 H 1.08997 * 109.47193 * 89.99097 * 27 26 25 43 43 H 1.08996 * 109.46896 * 209.99941 * 27 26 25 44 44 H 1.09001 * 109.46322 * 329.99698 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3737 -0.0005 5 6 1.9246 3.6085 0.0000 6 7 1.1669 4.7839 0.0000 7 6 -0.0891 4.7759 0.4886 8 8 -0.5261 3.7768 1.0254 9 6 -0.9355 5.9826 0.3716 10 6 -0.4310 7.1350 -0.2411 11 6 -1.2185 8.2662 -0.3586 12 6 -2.5044 8.2750 0.1355 13 6 -3.0273 7.1271 0.7597 14 6 -4.3474 7.1328 1.2675 15 1 -4.8086 8.0639 1.5620 16 6 -5.0558 5.9321 1.3885 17 7 -4.5412 4.8199 0.9300 18 14 -6.7361 5.9171 2.2045 19 1 -7.7862 6.1449 1.1795 20 1 -6.9579 4.6014 2.8566 21 1 -6.7998 6.9928 3.2261 22 6 -2.2309 5.9752 0.8759 23 6 3.3125 3.6755 0.0016 24 6 4.0019 5.0157 0.0028 25 6 4.0608 2.5146 0.0032 26 6 3.4318 1.2838 -0.0026 27 6 4.2519 0.0196 -0.0072 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2129 2.3188 -0.0017 32 1 1.5454 5.6049 -0.3517 33 1 0.5773 7.1400 -0.6282 34 1 -0.8213 9.1493 -0.8369 35 1 -3.1118 9.1632 0.0433 36 1 -5.0325 3.9877 1.0135 37 1 -2.6230 5.0894 1.3532 38 1 4.1695 5.3389 -1.0246 39 1 3.3758 5.7458 0.5158 40 1 4.9586 4.9317 0.5180 41 1 5.1394 2.5686 0.0041 42 1 4.4488 -0.2895 1.0194 43 1 3.7035 -0.7674 -0.5249 44 1 5.1968 0.2014 -0.5194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000478575226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:53 Heat of formation + Delta-G solvation = -50.569416 kcal Electronic energy + Delta-G solvation = -26843.164263 eV Core-core repulsion = 23110.448505 eV Total energy + Delta-G solvation = -3732.715758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.99118 -40.66757 -39.15940 -38.50883 -36.08413 -35.57654 -33.39292 -32.65762 -31.60716 -31.24073 -28.84452 -27.88009 -27.34315 -26.66359 -24.49652 -23.23339 -22.81921 -21.58709 -21.24124 -19.81118 -19.30746 -17.95942 -17.56672 -16.94945 -16.75568 -16.71313 -16.41577 -16.27000 -15.69147 -15.63040 -15.08596 -14.77391 -14.69754 -14.64462 -14.39398 -14.24978 -13.97853 -13.52286 -13.46260 -13.00473 -12.92586 -12.89261 -12.79261 -12.74399 -12.59789 -12.42662 -12.24965 -12.18223 -12.10550 -11.79824 -11.59325 -11.17515 -11.06145 -10.72751 -9.61720 -9.41518 -9.37917 -8.70016 -8.57901 -6.45145 0.01898 0.40280 0.52502 0.98962 1.35739 1.45035 1.50517 1.96614 2.00540 2.17877 2.32179 2.69403 2.82014 3.65390 3.71882 3.91821 3.97527 4.02199 4.17039 4.23193 4.30314 4.39917 4.47864 4.53556 4.56914 4.64432 4.73450 4.84794 4.85624 4.86707 4.91043 5.04348 5.09920 5.12996 5.18094 5.29581 5.32689 5.44779 5.47999 5.49856 5.54275 5.81416 5.86692 5.87158 6.07521 6.24192 6.35117 6.40516 6.59977 6.85642 6.91797 7.09568 8.30827 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014796 B = 0.003424 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.952537 B = 8176.274958 C = 9887.669787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.118 3.882 4 C -0.242 4.242 5 C 0.164 3.836 6 N -0.653 5.653 7 C 0.560 3.440 8 O -0.559 6.559 9 C -0.145 4.145 10 C -0.194 4.194 11 C -0.098 4.098 12 C -0.209 4.209 13 C 0.060 3.940 14 C -0.489 4.489 15 H 0.084 0.916 16 C 0.022 3.978 17 N -0.833 5.833 18 Si 0.989 3.011 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.254 1.254 22 C -0.126 4.126 23 C -0.150 4.150 24 C -0.109 4.109 25 C -0.058 4.058 26 C -0.144 4.144 27 C -0.095 4.095 28 H 0.046 0.954 29 H 0.131 0.869 30 H 0.039 0.961 31 H 0.126 0.874 32 H 0.424 0.576 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.111 0.889 36 H 0.284 0.716 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.092 0.908 41 H 0.171 0.829 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.282 -4.027 -3.678 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.072 3.928 4 C -0.263 4.263 5 C 0.069 3.931 6 N -0.298 5.298 7 C 0.352 3.648 8 O -0.438 6.438 9 C -0.148 4.148 10 C -0.213 4.213 11 C -0.116 4.116 12 C -0.229 4.229 13 C 0.057 3.943 14 C -0.519 4.519 15 H 0.102 0.898 16 C -0.191 4.191 17 N -0.460 5.460 18 Si 0.809 3.191 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.178 1.178 22 C -0.146 4.146 23 C -0.153 4.153 24 C -0.165 4.165 25 C -0.076 4.076 26 C -0.145 4.145 27 C -0.151 4.151 28 H 0.065 0.935 29 H 0.149 0.851 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.265 0.735 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.188 0.812 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.942 -5.107 -3.344 17.071 hybrid contribution -1.680 0.271 0.240 1.718 sum 14.263 -4.836 -3.105 15.377 Atomic orbital electron populations 1.23126 0.77566 1.05061 1.00831 1.85970 1.22059 1.26499 1.88778 1.18937 0.92590 0.83683 0.97553 1.21449 1.01255 0.92137 1.11435 1.17644 0.91048 0.85301 0.99120 1.43354 1.13468 1.11885 1.61087 1.18952 0.81415 0.88139 0.76290 1.90645 1.73589 1.35770 1.43798 1.19693 0.95078 0.93787 1.06248 1.20888 1.00524 0.92753 1.07162 1.20929 0.93530 0.97990 0.99104 1.21489 0.97568 0.99055 1.04767 1.18004 0.93455 0.91857 0.90950 1.19910 0.98396 0.94841 1.38753 0.89782 1.26892 1.04288 0.94236 0.93642 1.69852 1.39335 1.00600 1.36174 0.85093 0.76221 0.78745 0.79009 1.18427 1.19819 1.17779 1.21855 0.91656 1.00402 1.00731 1.19890 0.89880 0.98537 1.06974 1.20754 1.00864 0.91295 1.03600 1.20935 1.00973 0.88855 0.96883 1.19623 0.89684 0.98017 1.07206 1.20570 0.98988 0.92899 1.02654 0.93524 0.85132 0.94195 0.85682 0.73544 0.84679 0.84067 0.87053 0.90540 0.86460 0.89441 0.92352 0.88893 0.81176 0.91096 0.92153 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.81 113.37 1.11 1.93 16 2 O -0.32 -9.86 9.54 -92.34 -0.88 -10.74 16 3 C 0.12 3.83 6.66 22.49 0.15 3.98 16 4 C -0.24 -9.01 7.70 22.49 0.17 -8.84 16 5 C 0.16 5.48 6.41 38.16 0.24 5.73 16 6 N -0.65 -22.39 4.91 -306.15 -1.50 -23.89 16 7 C 0.56 25.03 7.57 86.79 0.66 25.68 16 8 O -0.56 -28.97 13.50 -3.89 -0.05 -29.02 16 9 C -0.14 -6.79 5.87 -20.14 -0.12 -6.91 16 10 C -0.19 -7.43 9.54 22.70 0.22 -7.22 16 11 C -0.10 -3.74 10.01 22.18 0.22 -3.52 16 12 C -0.21 -9.52 9.78 22.77 0.22 -9.29 16 13 C 0.06 3.19 5.61 -21.32 -0.12 3.07 16 14 C -0.49 -26.28 9.09 23.47 0.21 -26.07 16 15 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 16 C 0.02 1.16 5.36 85.25 0.46 1.61 16 17 N -0.83 -46.05 10.39 21.82 0.23 -45.82 16 18 Si 0.99 39.33 29.56 68.60 2.03 41.36 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 21 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 22 C -0.13 -6.91 8.26 23.01 0.19 -6.72 16 23 C -0.15 -3.72 5.90 -19.72 -0.12 -3.84 16 24 C -0.11 -1.83 9.45 71.24 0.67 -1.16 16 25 C -0.06 -1.26 9.34 22.24 0.21 -1.05 16 26 C -0.14 -3.67 5.90 -19.74 -0.12 -3.79 16 27 C -0.09 -1.77 9.78 71.24 0.70 -1.07 16 28 H 0.05 1.37 7.66 -2.38 -0.02 1.35 16 29 H 0.13 2.69 8.14 -2.39 -0.02 2.68 16 30 H 0.04 1.30 7.66 -2.39 -0.02 1.28 16 31 H 0.13 5.43 4.03 -2.91 -0.01 5.42 16 32 H 0.42 11.49 5.43 -92.71 -0.50 10.98 16 33 H 0.14 3.88 6.40 -2.91 -0.02 3.86 16 34 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 35 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 36 H 0.28 14.52 8.30 -92.71 -0.77 13.75 16 37 H 0.12 7.20 5.35 -2.91 -0.02 7.18 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.06 6.98 -2.38 -0.02 1.05 16 40 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 41 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.22 7.53 -2.39 -0.02 1.20 16 44 H 0.09 1.16 8.08 -2.39 -0.02 1.15 16 Total: -1.00 -70.40 363.20 5.32 -65.08 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: 0.54 Total: 40.51 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 4.97 Total: -37.47 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -1.28 Total: -69.71 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.93 Total: -39.76 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -70.40 5.32 -65.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000478575226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.506 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds