Wall clock time and date at job start Tue Mar 31 2020 14:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38420 * 119.91208 * 2 1 4 4 C 1.38390 * 120.34671 * 180.02562 * 3 2 1 5 5 C 1.37905 * 120.16857 * 0.02562 * 4 3 2 6 6 C 1.39818 * 119.82755 * 359.97202 * 5 4 3 7 7 C 1.47202 * 120.17254 * 179.97438 * 6 5 4 8 8 C 1.34813 * 120.00564 * 136.34424 * 7 6 5 9 9 C 1.46427 * 119.99624 * 349.04814 * 8 7 6 10 10 O 1.21696 * 120.00234 * 353.24162 * 9 8 7 11 11 N 1.34769 * 120.00015 * 173.23648 * 9 8 7 12 12 C 1.46502 * 120.00078 * 0.28084 * 11 9 8 13 13 C 1.50701 * 109.47031 * 269.72164 * 12 11 9 14 14 H 1.08003 * 119.99662 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00005 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99909 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99978 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46832 * 59.99819 * 17 15 13 19 19 H 1.48496 * 109.47144 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47369 * 300.00081 * 17 15 13 21 21 C 1.46507 * 120.00239 * 180.02562 * 11 9 8 22 22 C 1.50702 * 109.46932 * 90.00277 * 21 11 9 23 23 C 1.34514 * 125.78840 * 89.71696 * 22 21 11 24 24 C 1.41384 * 106.83874 * 179.88820 * 23 22 21 25 25 C 1.34516 * 106.84282 * 0.37359 * 24 23 22 26 26 O 1.34300 * 125.78921 * 270.02640 * 22 21 11 27 27 C 1.37874 * 119.92023 * 180.25538 * 2 1 3 28 28 H 1.08999 * 109.47053 * 90.00112 * 1 2 3 29 29 H 1.09000 * 109.46781 * 210.00214 * 1 2 3 30 30 H 1.08997 * 109.47292 * 329.99839 * 1 2 3 31 31 H 1.07999 * 119.83301 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.91508 * 179.97438 * 4 3 2 33 33 H 1.07998 * 120.08812 * 179.97438 * 5 4 3 34 34 H 1.08005 * 119.99816 * 316.34457 * 7 6 5 35 35 H 1.08000 * 120.00259 * 169.05249 * 8 7 6 36 36 H 1.08996 * 109.47040 * 29.72190 * 12 11 9 37 37 H 1.09003 * 109.47209 * 149.72160 * 12 11 9 38 38 H 0.96999 * 119.99623 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.46983 * 210.00274 * 21 11 9 40 40 H 1.09002 * 109.47086 * 330.00381 * 21 11 9 41 41 H 1.07995 * 126.58182 * 0.02897 * 23 22 21 42 42 H 1.08001 * 126.57738 * 180.16198 * 24 23 22 43 43 H 1.07998 * 125.79309 * 179.74764 * 25 24 23 44 44 H 1.08007 * 120.08238 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1998 0.0000 4 6 3.5811 1.2103 -0.0005 5 6 4.2832 0.0233 -0.0016 6 6 3.5932 -1.1927 -0.0016 7 6 4.3349 -2.4642 -0.0033 8 6 3.9460 -3.4727 0.8025 9 6 2.9469 -3.2326 1.8456 10 8 2.5583 -2.1008 2.0671 11 7 2.4574 -4.2650 2.5603 12 6 2.9296 -5.6268 2.2978 13 6 2.0533 -6.2697 1.2539 14 1 1.2271 -5.7192 0.8288 15 6 2.3064 -7.5608 0.8414 16 7 3.3128 -8.2310 1.3587 17 14 1.2199 -8.3581 -0.4521 18 1 1.2775 -7.5632 -1.7052 19 1 1.6992 -9.7379 -0.7191 20 1 -0.1807 -8.4065 0.0393 21 6 1.4573 -4.0249 3.6036 22 6 0.0767 -4.1123 3.0056 23 6 -0.6692 -5.2274 2.9083 24 6 -1.8846 -4.8545 2.2897 25 6 -1.8054 -3.5353 2.0385 26 8 -0.6151 -3.0912 2.4743 27 6 2.1947 -1.1950 -0.0053 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6531 2.1327 0.0004 32 1 4.1126 2.1504 -0.0009 33 1 5.3631 0.0330 -0.0024 34 1 5.1908 -2.5892 -0.6501 35 1 4.3715 -4.4576 0.6787 36 1 3.9577 -5.5917 1.9378 37 1 2.8864 -6.2099 3.2177 38 1 3.4911 -9.1391 1.0683 39 1 1.5621 -4.7754 4.3870 40 1 1.6069 -3.0324 4.0288 41 1 -0.3936 -6.2172 3.2410 42 1 -2.7157 -5.5047 2.0596 43 1 -2.5690 -2.9353 1.5662 44 1 1.6547 -2.1304 -0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491353856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:11 Heat of formation + Delta-G solvation = 34.399207 kcal Electronic energy + Delta-G solvation = -28054.956857 eV Core-core repulsion = 24325.925615 eV Total energy + Delta-G solvation = -3729.031242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.97531 -39.63388 -38.39300 -35.30545 -33.72900 -32.69608 -32.36832 -32.01577 -30.47953 -29.06404 -27.36570 -26.61822 -25.65076 -23.42141 -22.83501 -21.29821 -21.15897 -20.60634 -19.77916 -17.78704 -16.99518 -16.79564 -16.54441 -16.04129 -15.53244 -15.08413 -14.84873 -14.58755 -14.52375 -13.93113 -13.78750 -13.39458 -13.18962 -12.77364 -12.75616 -12.44217 -12.37502 -12.27586 -12.15926 -12.03226 -11.90364 -11.74833 -11.32468 -11.20462 -11.01021 -10.79997 -10.74992 -10.62944 -10.20079 -9.81420 -9.50280 -9.30877 -9.13508 -8.57313 -8.25407 -8.01998 -7.73471 -7.62201 -6.19122 -4.24388 1.20137 1.85508 2.20959 2.33570 3.14268 3.23987 3.28666 3.32873 3.51356 4.01738 4.06477 4.23892 4.35159 5.10665 5.14523 5.16974 5.20176 5.22388 5.31665 5.44561 5.53777 5.56195 5.66243 5.77492 5.78700 5.84653 5.92491 5.99517 6.04283 6.09677 6.33228 6.41547 6.45317 6.52552 6.56243 6.61369 6.64116 6.70724 6.86840 6.98099 7.05790 7.09065 7.14161 7.41576 7.46839 7.71182 7.76912 8.03928 8.25141 8.80222 8.98366 9.42972 10.87845 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.005143 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.251747 B = 5442.520934 C = 6604.181699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.119 4.119 4 C -0.136 4.136 5 C -0.113 4.113 6 C -0.051 4.051 7 C -0.064 4.064 8 C -0.172 4.172 9 C 0.539 3.461 10 O -0.547 6.547 11 N -0.587 5.587 12 C 0.235 3.765 13 C -0.526 4.526 14 H 0.062 0.938 15 C 0.066 3.934 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.201 3.799 22 C -0.015 4.015 23 C -0.180 4.180 24 C -0.216 4.216 25 C -0.058 4.058 26 O -0.168 6.168 27 C -0.028 4.028 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.130 0.870 35 H 0.145 0.855 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.192 0.808 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.917 11.509 -0.312 11.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.099 4.099 3 C -0.137 4.137 4 C -0.154 4.154 5 C -0.132 4.132 6 C -0.051 4.051 7 C -0.084 4.084 8 C -0.192 4.192 9 C 0.329 3.671 10 O -0.428 6.428 11 N -0.317 5.317 12 C 0.116 3.884 13 C -0.565 4.565 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C 0.077 3.923 22 C -0.066 4.066 23 C -0.200 4.200 24 C -0.235 4.235 25 C -0.126 4.126 26 O -0.064 6.064 27 C -0.046 4.046 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.166 0.834 42 H 0.157 0.843 43 H 0.209 0.791 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.902 12.164 -0.182 12.507 hybrid contribution -0.776 -1.196 -0.850 1.659 sum -3.679 10.968 -1.032 11.615 Atomic orbital electron populations 1.20708 0.91817 1.02621 1.01347 1.19652 0.95700 0.93023 1.01549 1.20933 0.94187 0.96940 1.01664 1.20806 0.94144 0.97417 1.03011 1.21077 0.99012 0.91790 1.01282 1.18881 0.93257 0.92681 1.00310 1.22263 0.97175 0.91631 0.97296 1.23365 0.99345 0.99917 0.96619 1.18454 0.81767 0.84357 0.82479 1.90817 1.61459 1.22050 1.68501 1.48292 1.38597 1.09842 1.34979 1.19561 0.95725 0.75737 0.97409 1.21427 1.14364 0.98516 1.22204 0.92024 1.24882 0.95240 0.96989 0.96503 1.69904 1.28644 1.11709 1.42998 0.86645 0.81008 0.78308 0.82109 1.20220 1.21252 1.20071 1.19613 0.80197 1.03162 0.89353 1.22899 0.95561 0.85822 1.02362 1.21575 0.94180 0.99274 1.04937 1.21771 1.00113 0.95538 1.06087 1.23828 0.88097 0.95595 1.05102 1.84057 1.25243 1.37338 1.59726 1.20978 0.92803 0.97171 0.93683 0.92053 0.91402 0.92192 0.87080 0.86865 0.86685 0.85209 0.83698 0.94000 0.94571 0.92546 0.87968 0.89465 0.83433 0.84285 0.79104 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.01 36.00 0.36 -1.14 16 2 C -0.10 -1.61 5.87 -104.69 -0.61 -2.22 16 3 C -0.12 -1.74 9.69 -39.46 -0.38 -2.12 16 4 C -0.14 -1.91 10.03 -39.65 -0.40 -2.31 16 5 C -0.11 -1.71 9.80 -39.11 -0.38 -2.09 16 6 C -0.05 -0.88 4.53 -105.06 -0.48 -1.35 16 7 C -0.06 -1.05 9.81 -37.16 -0.36 -1.41 16 8 C -0.17 -3.21 9.14 -37.50 -0.34 -3.55 16 9 C 0.54 11.01 6.66 -12.97 -0.09 10.92 16 10 O -0.55 -11.76 11.73 5.19 0.06 -11.70 16 11 N -0.59 -11.94 2.44 -178.07 -0.43 -12.37 16 12 C 0.24 5.30 4.96 -5.19 -0.03 5.27 16 13 C -0.53 -13.13 9.13 -34.44 -0.31 -13.44 16 14 H 0.06 1.63 7.62 -52.48 -0.40 1.23 16 15 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -23.89 13.29 55.43 0.74 -23.15 16 17 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.20 3.65 5.98 -5.19 -0.03 3.62 16 22 C -0.02 -0.28 6.90 -35.62 -0.25 -0.53 16 23 C -0.18 -3.35 10.36 -39.70 -0.41 -3.76 16 24 C -0.22 -3.59 10.91 -39.70 -0.43 -4.02 16 25 C -0.06 -0.91 12.09 29.42 0.36 -0.56 16 26 O -0.17 -3.15 10.65 5.71 0.06 -3.09 16 27 C -0.03 -0.51 6.25 -39.11 -0.24 -0.76 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 30 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 35 H 0.15 2.74 6.15 -52.49 -0.32 2.42 16 36 H 0.04 0.97 6.01 -51.93 -0.31 0.66 16 37 H 0.04 0.85 7.89 -51.93 -0.41 0.44 16 38 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.10 1.64 7.89 -51.93 -0.41 1.23 16 40 H 0.09 1.55 7.42 -51.93 -0.39 1.17 16 41 H 0.15 2.78 8.06 -52.49 -0.42 2.35 16 42 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 43 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 44 H 0.11 2.29 7.04 -52.48 -0.37 1.92 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -29.48 375.59 -9.04 -38.52 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.97 Total: 8.47 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -4.14 Total: -17.83 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.30 Total: -35.52 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.12 Total: -14.79 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.48 -9.04 -38.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491353856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.917 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds