Wall clock time and date at job start Tue Mar 31 2020 14:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38420 * 119.91208 * 2 1 4 4 C 1.38390 * 120.34671 * 180.02562 * 3 2 1 5 5 C 1.37905 * 120.16857 * 0.02562 * 4 3 2 6 6 C 1.39818 * 119.82755 * 359.97202 * 5 4 3 7 7 C 1.47202 * 120.17254 * 179.97438 * 6 5 4 8 8 C 1.34813 * 120.00564 * 136.34424 * 7 6 5 9 9 C 1.46427 * 119.99624 * 349.04814 * 8 7 6 10 10 O 1.21696 * 120.00234 * 353.24162 * 9 8 7 11 11 N 1.34769 * 120.00015 * 173.23648 * 9 8 7 12 12 C 1.46502 * 120.00078 * 0.28084 * 11 9 8 13 13 C 1.50701 * 109.47031 * 269.72164 * 12 11 9 14 14 H 1.08003 * 119.99662 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00005 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99909 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99978 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46832 * 59.99819 * 17 15 13 19 19 H 1.48496 * 109.47144 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47369 * 300.00081 * 17 15 13 21 21 C 1.46507 * 120.00239 * 180.02562 * 11 9 8 22 22 C 1.50702 * 109.46932 * 90.00277 * 21 11 9 23 23 C 1.34514 * 125.78840 * 89.71696 * 22 21 11 24 24 C 1.41384 * 106.83874 * 179.88820 * 23 22 21 25 25 C 1.34516 * 106.84282 * 0.37359 * 24 23 22 26 26 O 1.34300 * 125.78921 * 270.02640 * 22 21 11 27 27 C 1.37874 * 119.92023 * 180.25538 * 2 1 3 28 28 H 1.08999 * 109.47053 * 90.00112 * 1 2 3 29 29 H 1.09000 * 109.46781 * 210.00214 * 1 2 3 30 30 H 1.08997 * 109.47292 * 329.99839 * 1 2 3 31 31 H 1.07999 * 119.83301 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.91508 * 179.97438 * 4 3 2 33 33 H 1.07998 * 120.08812 * 179.97438 * 5 4 3 34 34 H 1.08005 * 119.99816 * 316.34457 * 7 6 5 35 35 H 1.08000 * 120.00259 * 169.05249 * 8 7 6 36 36 H 1.08996 * 109.47040 * 29.72190 * 12 11 9 37 37 H 1.09003 * 109.47209 * 149.72160 * 12 11 9 38 38 H 0.96999 * 119.99623 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.46983 * 210.00274 * 21 11 9 40 40 H 1.09002 * 109.47086 * 330.00381 * 21 11 9 41 41 H 1.07995 * 126.58182 * 0.02897 * 23 22 21 42 42 H 1.08001 * 126.57738 * 180.16198 * 24 23 22 43 43 H 1.07998 * 125.79309 * 179.74764 * 25 24 23 44 44 H 1.08007 * 120.08238 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1998 0.0000 4 6 3.5811 1.2103 -0.0005 5 6 4.2832 0.0233 -0.0016 6 6 3.5932 -1.1927 -0.0016 7 6 4.3349 -2.4642 -0.0033 8 6 3.9460 -3.4727 0.8025 9 6 2.9469 -3.2326 1.8456 10 8 2.5583 -2.1008 2.0671 11 7 2.4574 -4.2650 2.5603 12 6 2.9296 -5.6268 2.2978 13 6 2.0533 -6.2697 1.2539 14 1 1.2271 -5.7192 0.8288 15 6 2.3064 -7.5608 0.8414 16 7 3.3128 -8.2310 1.3587 17 14 1.2199 -8.3581 -0.4521 18 1 1.2775 -7.5632 -1.7052 19 1 1.6992 -9.7379 -0.7191 20 1 -0.1807 -8.4065 0.0393 21 6 1.4573 -4.0249 3.6036 22 6 0.0767 -4.1123 3.0056 23 6 -0.6692 -5.2274 2.9083 24 6 -1.8846 -4.8545 2.2897 25 6 -1.8054 -3.5353 2.0385 26 8 -0.6151 -3.0912 2.4743 27 6 2.1947 -1.1950 -0.0053 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6531 2.1327 0.0004 32 1 4.1126 2.1504 -0.0009 33 1 5.3631 0.0330 -0.0024 34 1 5.1908 -2.5892 -0.6501 35 1 4.3715 -4.4576 0.6787 36 1 3.9577 -5.5917 1.9378 37 1 2.8864 -6.2099 3.2177 38 1 3.4911 -9.1391 1.0683 39 1 1.5621 -4.7754 4.3870 40 1 1.6069 -3.0324 4.0288 41 1 -0.3936 -6.2172 3.2410 42 1 -2.7157 -5.5047 2.0596 43 1 -2.5690 -2.9353 1.5662 44 1 1.6547 -2.1304 -0.0091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491353856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:10 Heat of formation + Delta-G solvation = 21.240438 kcal Electronic energy + Delta-G solvation = -28055.527464 eV Core-core repulsion = 24325.925615 eV Total energy + Delta-G solvation = -3729.601849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.36488 -41.07101 -39.71241 -36.91816 -35.11663 -34.53379 -33.79023 -33.21180 -31.90916 -30.38333 -29.16823 -27.77835 -27.08461 -25.08180 -24.36883 -22.58919 -22.50735 -21.90868 -21.15997 -19.30959 -18.63630 -18.32874 -18.13230 -17.35603 -17.04294 -16.55691 -16.27877 -16.11508 -15.98724 -15.28749 -15.15811 -14.71233 -14.43611 -14.27000 -14.19852 -13.99067 -13.79135 -13.66447 -13.55758 -13.45773 -13.27294 -13.06087 -12.89890 -12.80668 -12.60837 -12.48794 -12.13144 -11.91931 -11.82811 -11.72998 -10.89748 -10.72018 -10.62566 -10.52914 -9.67885 -9.37149 -9.20370 -8.95473 -8.17699 -6.27789 -0.12293 0.65024 0.83986 1.05360 1.38684 1.40566 1.47399 1.75805 2.17505 2.35830 2.54981 2.57041 3.02865 3.13590 3.79536 3.85217 3.94274 4.05164 4.12540 4.19967 4.24025 4.31002 4.42194 4.50430 4.52549 4.60405 4.65419 4.79442 4.81884 4.88996 4.97220 4.99543 5.11507 5.15787 5.21678 5.25759 5.28506 5.35877 5.41451 5.65977 5.68646 5.70483 5.76167 5.82184 5.88048 6.09882 6.25531 6.32453 6.57287 6.84951 7.34849 7.45542 8.87935 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.005143 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.251747 B = 5442.520934 C = 6604.181699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.115 4.115 3 C -0.120 4.120 4 C -0.134 4.134 5 C -0.115 4.115 6 C -0.079 4.079 7 C -0.034 4.034 8 C -0.209 4.209 9 C 0.536 3.464 10 O -0.561 6.561 11 N -0.592 5.592 12 C 0.251 3.749 13 C -0.521 4.521 14 H 0.044 0.956 15 C 0.028 3.972 16 N -0.919 5.919 17 Si 0.941 3.059 18 H -0.279 1.279 19 H -0.281 1.281 20 H -0.274 1.274 21 C 0.198 3.802 22 C -0.034 4.034 23 C -0.193 4.193 24 C -0.230 4.230 25 C -0.047 4.047 26 O -0.186 6.186 27 C -0.051 4.051 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.136 0.864 36 H 0.035 0.965 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.139 0.861 42 H 0.163 0.837 43 H 0.235 0.765 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 13.685 -1.427 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.115 4.115 3 C -0.138 4.138 4 C -0.151 4.151 5 C -0.132 4.132 6 C -0.079 4.079 7 C -0.054 4.054 8 C -0.230 4.230 9 C 0.328 3.672 10 O -0.443 6.443 11 N -0.321 5.321 12 C 0.130 3.870 13 C -0.560 4.560 14 H 0.062 0.938 15 C -0.172 4.172 16 N -0.559 5.559 17 Si 0.768 3.232 18 H -0.204 1.204 19 H -0.206 1.206 20 H -0.199 1.199 21 C 0.075 3.925 22 C -0.085 4.085 23 C -0.213 4.213 24 C -0.249 4.249 25 C -0.114 4.114 26 O -0.082 6.082 27 C -0.069 4.069 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.182 0.818 35 H 0.154 0.846 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.106 0.894 41 H 0.157 0.843 42 H 0.180 0.820 43 H 0.251 0.749 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.291 14.342 -1.290 14.771 hybrid contribution -0.690 -1.711 -0.545 1.924 sum -3.981 12.632 -1.835 13.371 Atomic orbital electron populations 1.20703 0.90598 1.02475 1.02310 1.19979 0.96945 0.93099 1.01473 1.21324 0.94834 0.97312 1.00286 1.21269 0.94197 0.98504 1.01156 1.21422 1.00450 0.91218 1.00160 1.19088 0.93122 0.93792 1.01871 1.22690 0.96658 0.90615 0.95397 1.23229 1.00860 1.00505 0.98375 1.18747 0.81790 0.84088 0.82594 1.90793 1.62120 1.22344 1.69066 1.48244 1.39245 1.08960 1.35693 1.19212 0.94972 0.76672 0.96124 1.21453 1.13774 0.98434 1.22308 0.93793 1.25437 0.96236 0.97490 0.98038 1.69976 1.29789 1.11970 1.44138 0.85865 0.79682 0.77667 0.80031 1.20445 1.20634 1.19917 1.19737 0.79851 1.03675 0.89213 1.22930 0.95950 0.86172 1.03489 1.21686 0.95394 0.98817 1.05403 1.22078 1.00109 0.96411 1.06253 1.24672 0.87503 0.95943 1.03325 1.84054 1.26404 1.37685 1.60069 1.20833 0.93470 0.96600 0.96017 0.90508 0.93528 0.90234 0.84142 0.83375 0.84092 0.81761 0.84617 0.94725 0.95608 0.92484 0.86490 0.89382 0.84327 0.81970 0.74928 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.77 10.01 71.24 0.71 -2.06 16 2 C -0.11 -3.61 5.87 -19.91 -0.12 -3.72 16 3 C -0.12 -3.14 9.69 22.35 0.22 -2.92 16 4 C -0.13 -3.28 10.03 22.23 0.22 -3.06 16 5 C -0.11 -3.15 9.80 22.57 0.22 -2.92 16 6 C -0.08 -2.64 4.53 -20.15 -0.09 -2.73 16 7 C -0.03 -1.11 9.81 23.84 0.23 -0.87 16 8 C -0.21 -8.05 9.14 23.62 0.22 -7.83 16 9 C 0.54 22.76 6.66 86.38 0.58 23.34 16 10 O -0.56 -24.85 11.73 -4.34 -0.05 -24.90 16 11 N -0.59 -25.12 2.44 -835.52 -2.04 -27.16 16 12 C 0.25 11.77 4.96 85.63 0.42 12.19 16 13 C -0.52 -26.75 9.13 25.60 0.23 -26.52 16 14 H 0.04 2.39 7.62 -2.91 -0.02 2.37 16 15 C 0.03 1.46 5.46 84.66 0.46 1.92 16 16 N -0.92 -49.84 13.29 21.45 0.28 -49.55 16 17 Si 0.94 42.41 29.54 68.60 2.03 44.44 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 C 0.20 7.53 5.98 85.63 0.51 8.04 16 22 C -0.03 -1.34 6.90 24.83 0.17 -1.17 16 23 C -0.19 -7.34 10.36 22.19 0.23 -7.11 16 24 C -0.23 -7.48 10.91 22.19 0.24 -7.23 16 25 C -0.05 -1.43 12.09 66.97 0.81 -0.62 16 26 O -0.19 -7.05 10.65 -2.49 -0.03 -7.08 16 27 C -0.05 -1.86 6.25 22.57 0.14 -1.72 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.42 8.08 -2.39 -0.02 1.40 16 30 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 31 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.17 4.00 8.06 -2.91 -0.02 3.97 16 35 H 0.14 5.39 6.15 -2.91 -0.02 5.37 16 36 H 0.03 1.68 6.01 -2.39 -0.01 1.67 16 37 H 0.03 1.26 7.89 -2.39 -0.02 1.24 16 38 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 39 H 0.12 3.94 7.89 -2.39 -0.02 3.92 16 40 H 0.09 3.27 7.42 -2.39 -0.02 3.25 16 41 H 0.14 5.42 8.06 -2.91 -0.02 5.40 16 42 H 0.16 4.39 8.06 -2.91 -0.02 4.36 16 43 H 0.23 4.76 8.06 -2.91 -0.02 4.73 16 44 H 0.08 3.33 7.04 -2.91 -0.02 3.31 16 Total: -1.00 -64.96 375.59 6.61 -58.35 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 1.00 Total: 30.90 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 5.42 Total: -25.00 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -1.75 Total: -76.71 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.08 Total: -31.98 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -64.96 6.61 -58.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491353856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.593 kcal (2) G-P(sol) polarization free energy of solvation -64.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds